mRNA_C-linearis_contig8.15660.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A6H5KJT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT5_9PHAE) HSP 1 Score: 408 bits (1049), Expect = 4.140e-138 Identity = 214/288 (74.31%), Postives = 233/288 (80.90%), Query Frame = 3
Query: 51 CGLLALAALA----DGFMAPVRSSCRINHGVGLKMGADSRSSGNDEGSYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDRRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLRS 902
C LLAL ALA GFM P +C G G M A + G Y+SWL K++RARRP FV IARARLQRDFAVLLMR SYQ VD+LDFVPMD+FQK FFL RQ EW YKENFPR IKQGDL DPDYFDFISFAQYA+VA AMR+GRDFFEEKVG EG+KRTVQR ADFKDNARLPEEHARRVGDRILAYCTE FGSTKLAPVV G+++ ELREGCD IMN+LRLNFY LDY VTADLDR++L V+A APATIWGQQVLAQRRDRPANDFEAK + AYLR+
Sbjct: 6 CRLLALFALAFASSAGFMVP--PTCHSKRGRGHVMMASDQQEG-----YVSWLTQKIERARRPPFVKIARARLQRDFAVLLMRASYQVVDELDFVPMDDFQKQFFLFRQREWLGYKENFPR-IKQGDLADPDYFDFISFAQYASVAEAMRNGRDFFEEKVGAEGEKRTVQRSADFKDNARLPEEHARRVGDRILAYCTEAFGSTKLAPVVTQGQTVAELREGCDRIMNLLRLNFYTLDYAVTADLDRKVLTVRATAPATIWGQQVLAQRRDRPANDFEAKVISAYLRA 285
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: D8LI96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI96_ECTSI) HSP 1 Score: 319 bits (818), Expect = 2.650e-104 Identity = 165/240 (68.75%), Postives = 183/240 (76.25%), Query Frame = 3
Query: 183 YLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDRRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLRS 902
Y+SWL K++RARRP FV IARARLQRDFAVLLMR+SYQ VD+LDFVPMD+FQK FFLLRQ EW YK+NFPR IKQGDL DPDYFDFISFAQYA+VA AMR+GRDFFEEK AYCTE FGSTKLAPVVA G+++ ELREGCD IMN+LRLNFY LDY VTADLDR++L V+A APATIWGQQVLAQRRDRPANDFEAK + AYLR+
Sbjct: 7 YVSWLTQKIERARRPPFVKIARARLQRDFAVLLMRSSYQVVDELDFVPMDDFQKQFFLLRQGEWLGYKQNFPR-IKQGDLADPDYFDFISFAQYASVAEAMRNGRDFFEEK-----------------------------------AYCTEAFGSTKLAPVVAQGQTVAELREGCDRIMNLLRLNFYTLDYAVTADLDRKVLTVRATAPATIWGQQVLAQRRDRPANDFEAKVISAYLRA 210
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A836CM91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM91_9STRA) HSP 1 Score: 255 bits (651), Expect = 8.910e-78 Identity = 144/271 (53.14%), Postives = 177/271 (65.31%), Query Frame = 3
Query: 102 RSSCRINHGVGLKMGADSRSSGNDEGSYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYCTETFGSTKLA-PVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDR---RLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLRS 902
+ S + HG M AD G SYLSW+ K++ +RRP V I RAR+QRDFAVLLMR+SY D+LD+ PMD FQ+ FFL RQ EW +++ P I QGDL DP+YFDFISFAQYAT+AA MR + F EKVG +G+ +TVQR + D+A LP EHARRVGDRI Y ETF S A P V+ L + G + +M+ RLNF+ +D V A + +L V A APAT+W QQVLAQRRD P NDFEAKAV AYLR+
Sbjct: 45 QGSAKRRHGGCWHMSADEIDDGQ---SYLSWVGRKLELSRRPPPVMIPRARIQRDFAVLLMRSSYAVADELDYTPMDGFQREFFLFRQGEWQDFQKQHPG-ILQGDLTDPNYFDFISFAQYATIAAGMRSAQLLFTEKVGADGETQTVQRAPELADDALLPGEHARRVGDRIFTYIMETFASVPEALPQVSVKPPLSIIARGVERVMDKFRLNFFCVDAKVAASTGKDGSAVLTVTARAPATLWSQQVLAQRRDAPTNDFEAKAVAAYLRA 311
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A7S2V3L1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3L1_9STRA) HSP 1 Score: 196 bits (497), Expect = 4.510e-55 Identity = 113/244 (46.31%), Postives = 152/244 (62.30%), Query Frame = 3
Query: 174 EGSYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGR-DFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYC-TETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDRRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
E Y SWL+ K++R RP + + R R+ RDFAVLLMR+SY D++DF+PMDEFQK FFL R DE+ Y E R + QGDL DP YFDFISFAQYAT++ M++ F EK G EG+ +QR ++ DN LP HA+ VGDR+L Y TE + KLAP V S+ L G + +++LN + LD+ V + + + V+ PA++W QQVL ++ NDFEAK + AYLR
Sbjct: 58 EEDYFSWLSQKIERKSRPKAIKLPRLRIDRDFAVLLMRSSYAVADEMDFIPMDEFQKQFFLYRADEYELYLEE-NRGVTQGDLADPVYFDFISFAQYATLSRFMKNPPGQVFVEKRGAEGEDFVIQRPQEYADNKVLPIVHAQLVGDRMLEYLSTEKY--EKLAPKVPEKPSVETLLSGIVQAVGLMKLNSFMLDFQVKP-VSPKEIEVRLQGPASLWSQQVLRGQQTVLTNDFEAKLICAYLR 297
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: R1CRK3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CRK3_EMIHU) HSP 1 Score: 194 bits (492), Expect = 6.490e-54 Identity = 118/243 (48.56%), Postives = 149/243 (61.32%), Query Frame = 3
Query: 180 SYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADF-KDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLD--RRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
S+ L + RA P S+ R R+ DFAVLLMRTSY D+LDF+PMDEFQK FLLRQD+W Y++ P +KQGD+ DP+YFDF+S+ QYAT+AA MRDGR FEE + G V RD +DNARLP + RVGD+IL E + LAP V S L EG + + N +Y+++A L+ R + AIAPAT+W QQVL+ R D NDFEAKA+ AYLR
Sbjct: 100 SFAQILREQAVRAAGPRPRSLPRRRIDIDFAVLLMRTSYATADELDFMPMDEFQKRQFLLRQDDWEGYRQPLPP-VKQGDISDPNYFDFMSYCQYATIAAGMRDGRVVFEELIDANGTSVVVARDPALPRDNARLPALLSLRVGDKILDAIAERYPG--LAPTVELRPSRAALLEGVKALAQVFEYN----NYLLSARLEPSERGFQLSAIAPATVWSQQVLSLRGDL-VNDFEAKAIAAYLR 334
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: R1DSH8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DSH8_EMIHU) HSP 1 Score: 192 bits (488), Expect = 9.960e-53 Identity = 116/232 (50.00%), Postives = 145/232 (62.50%), Query Frame = 3
Query: 213 RARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADF-KDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLD--RRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
RA P S+ R R+ DFAVLLMRTSY D+LDF+PMDEFQK FLLRQD+W Y++ P +KQGD+ DP+YFDF+S+ QYAT+AA MRDGR FEE + G V RD +DNARLP + RVGD+IL E + LAP V S L EG + + N +Y+++A L+ R + AIAPAT+W QQVL+ R D NDFEAKA+ AYLR
Sbjct: 166 RAAGPRPRSLPRRRIDIDFAVLLMRTSYATADELDFMPMDEFQKRQFLLRQDDWEGYRQPLPP-VKQGDISDPNYFDFMSYCQYATIAAGMRDGRVVFEELIDANGTSVVVARDPALPRDNARLPALLSLRVGDKILDAIAERYPG--LAPTVELRPSRAALLEGVKALAQVFEYN----NYLLSARLEPSERGFQLSAIAPATVWSQQVLSLRGDL-VNDFEAKAIAAYLR 389
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A0M0K8A7_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K8A7_9EUKA) HSP 1 Score: 198 bits (504), Expect = 1.050e-52 Identity = 114/236 (48.31%), Postives = 140/236 (59.32%), Query Frame = 3
Query: 207 VDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKD-NARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSL----PELREGCDLIMNILRLNFYHLDYVVTADLDRRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
++ + RP ++ R RL++DFAVLLMRTSY D+LDF+PMDEFQK FL RQ EW Y+E P + QGDL DP YFDFISF QYA++A+ MR GR FEE + G V R N LPE H+ RVGDR+L + E + L PV+ P S P L EGC + +I LN + L VT + +APAT+WG QVL R D P NDFE AVLAYLR
Sbjct: 438 IEASMRPKIRALPRRRLEQDFAVLLMRTSYAVADELDFMPMDEFQKEQFLFRQREWDTYREKLP--VMQGDLTDPAYFDFISFCQYASIASGMRRGRMIFEELIDANGTSVIVSRAPTLPQRNELLPEAHSIRVGDRLLNWMLERYDGV-LRPVIPPTSSALPRAPVLVEGCQRVADIFTLNEFALTSTVTPLASGAGVAWTLVAPATLWGAQVLQLRGDEPKNDFEVMAVLAYLR 670
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A0G4F5D5_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F5D5_VITBC) HSP 1 Score: 178 bits (452), Expect = 2.490e-48 Identity = 113/264 (42.80%), Postives = 151/264 (57.20%), Query Frame = 3
Query: 153 SRSSGNDEGSYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENF-PRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYCTETFG---STKLAPVV-APGRSLPE-LREGCDLIMNILRLNFYHL--DYVVTADLD--RRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLRSLRFR 914
SR SG D + L L D R PA V I R R+ +DFAV +MR SY D+LDFVPM++FQK FFL RQ+EW Y+E P I QGDL D +YFDFISFAQY T+ M G+ F EK G G+++ V+R A DN+ LP EH+RRVGDR+L + + F S K ++ A R P + I N++ + Y + +T + D + + + PAT+WGQQVL+ R ND+EAK +AY R +R
Sbjct: 41 SRDSGADL-NLLQRLKQAADELRSPAPVKIPRTRINQDFAVQMMRQSYNVADELDFVPMNDFQKDFFLYRQNEWERYRERLKPMPITQGDLADANYFDFISFAQYLTLYTEMCSGQQLFVEKTGATGEEQLVRRPAFLADNSLLPSEHSRRVGDRLLDFLIDRFNTDESGKTCCIIRAAARPSPSFVVSNVQQIANLMTILGYAEKGEAKLTGERDDGKFSFEMMLVLPATLWGQQVLSIRGAGLPNDYEAKIAMAYTRRCGYR 303
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A7S0ETJ5_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ETJ5_9EUKA) HSP 1 Score: 174 bits (441), Expect = 1.580e-47 Identity = 102/246 (41.46%), Postives = 147/246 (59.76%), Query Frame = 3
Query: 177 GSYLSWLAGKVDRARRPAFVS---IARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDRRLLIVKA--IAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
GS L+ + A PA V + R++L+ DFAVLLMRT+Y D+LD+ PMD+FQ+ FL RQDEW Y+E P ++QG L +P YFDFISF QYAT+A M++ + F+E + G V R + ++A LP H+ RVG+ +LA+ + + K+ P V + +R+G I+NI +N Y++ + L+ VK +APAT+W Q +L RRD P NDFEAK V+AYL+
Sbjct: 2 GSPADRLSRMLQGAAGPARVKPQVLPRSKLENDFAVLLMRTTYSVADELDYYPMDKFQQDQFLFRQDEWELYREALPG-VQQGFLTEPAYFDFISFVQYATIATTMKEPKMIFDELIDANGTSIVVTRPPELANDALLPMRHSERVGEAVLAWMDDRYN--KIRPKVPSVLTAAAVRDGVQAILNIYEIN----GYMLLSKLEPTSHGVKITLVAPATLWSQSMLRNRRDLP-NDFEAKTVVAYLK 239
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A8J5X5N7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X5N7_DIALT) HSP 1 Score: 172 bits (435), Expect = 2.190e-46 Identity = 111/247 (44.94%), Postives = 146/247 (59.11%), Query Frame = 3
Query: 174 EGSYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRI-KQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADF-KDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDR---RLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
+G L LA ++ RP +IAR+R+ +DFAVLLMR+SY +++ FVPMDEFQ+ FFL RQDEW Y + KQGDLQDP YFDFISFAQY+T+A MR+GR + E VG EG++ +R AD +DNA LP EH RRVGD I ++ +E + +AP AP RE ++ + R+ + V +R L APAT+W Q+VL R NDFEA AV A +R
Sbjct: 21 KGDPLKLLARRL----RPKPPAIARSRIDQDFAVLLMRSSYTAAEEMRFVPMDEFQRAFFLNRQDEWQPYLAAVEGLVPKQGDLQDPSYFDFISFAQYSTLAEEMRNGRLAYRELVGAEGEQVVRERPADVPRDNAALPAEHRRRVGDVIFSWASERYD---IAPARAPDEIAARARE----LLEVFRIRGFVASTAVQLAQNRDGSATLTCAVGAPATLWSQRVLEGTALR--NDFEAMAVNALVR 254 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15660.1 >prot_C-linearis_contig8.15660.1 ID=prot_C-linearis_contig8.15660.1|Name=mRNA_C-linearis_contig8.15660.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=317bp MRMVRVCGLLALAALADGFMAPVRSSCRINHGVGLKMGADSRSSGNDEGSback to top mRNA from alignment at C-linearis_contig8:2286467..2289155+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15660.1 ID=mRNA_C-linearis_contig8.15660.1|Name=mRNA_C-linearis_contig8.15660.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2689bp|location=Sequence derived from alignment at C-linearis_contig8:2286467..2289155+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2286467..2289155+ >mRNA_C-linearis_contig8.15660.1 ID=mRNA_C-linearis_contig8.15660.1|Name=mRNA_C-linearis_contig8.15660.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1902bp|location=Sequence derived from alignment at C-linearis_contig8:2286467..2289155+ (Chordaria linearis ClinC8C monoicous)back to top |