mRNA_C-linearis_contig8.15650.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15650.1
Unique NamemRNA_C-linearis_contig8.15650.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15650.1 vs. uniprot
Match: D8LI90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI90_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.960e-37
Identity = 59/83 (71.08%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 VFGPANCAVVSSVGDCQSNLERPVSQEWVANSPCLGRFENPVHDSVACGFVPASSDLGTTIVVLAVFAGLYAAVFLWWIRRNR 249
            VFGPANCAV+S+VGDCQS+L RPVSQ+W A SPC+G+F++P H  + CG++P  SDLGTTIVV A FAGLYAAV LWWIRR R
Sbjct:  288 VFGPANCAVMSTVGDCQSDLWRPVSQQWAARSPCIGQFDDPEHSGIGCGYIPLKSDLGTTIVVCAAFAGLYAAVILWWIRRER 370
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI90_ECTSI1.960e-3771.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2212855..2213644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930543.6946158-CDS-C-linearis_contig8:2212854..22129991622930543.6946158-CDS-C-linearis_contig8:2212854..2212999Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2212855..2212999 +
1690881123.9145823-CDS-C-linearis_contig8:2212854..22129991690881123.9145823-CDS-C-linearis_contig8:2212854..2212999Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2212855..2212999 +
1622930543.7241287-CDS-C-linearis_contig8:2213537..22136441622930543.7241287-CDS-C-linearis_contig8:2213537..2213644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2213538..2213644 +
1690881123.9261444-CDS-C-linearis_contig8:2213537..22136441690881123.9261444-CDS-C-linearis_contig8:2213537..2213644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2213538..2213644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15650.1prot_C-linearis_contig8.15650.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2212855..2213644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15650.1

>prot_C-linearis_contig8.15650.1 ID=prot_C-linearis_contig8.15650.1|Name=mRNA_C-linearis_contig8.15650.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=84bp
VFGPANCAVVSSVGDCQSNLERPVSQEWVANSPCLGRFENPVHDSVACGF
VPASSDLGTTIVVLAVFAGLYAAVFLWWIRRNRR
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mRNA from alignment at C-linearis_contig8:2212855..2213644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15650.1 ID=mRNA_C-linearis_contig8.15650.1|Name=mRNA_C-linearis_contig8.15650.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=790bp|location=Sequence derived from alignment at C-linearis_contig8:2212855..2213644+ (Chordaria linearis ClinC8C monoicous)
GTTTTCGGCCCCGCCAACTGCGCTGTGGTATCGTCAGTTGGTGACTGCCA
GTCCAACCTGGAGCGGCCGGTGTCGCAGGAGTGGGTAGCGAACTCTCCCT
GCTTGGGCCGGTTCGAAAACCCTGTGCACGACAGCGTCGCCTGTGGTAGG
GCAGAGCTCAGTGGTGGTTGTGTTAGACCTCCTCTGCATGAAAATACCCG
ATAGTTTTCGTGGGCACTGGATGCTCCGAACACCTCTTCACGCTGCTTTA
TTCTTTTATTGGTGGCGAAGTTAGTTTCTTGTCCGTGCTTGGAGCTTGGT
TTTTGGACGTTTCTCGAAAGAACGAAACATAGAGCGGCAGATGGATGTAC
GCGCACAACTATTGTACAACTAGCAGCGCGACTGTTATTGGACGAAAGTG
CCCGTTCAGCCATACATACGTGCAGGCAAGGCTGTGGTTGGTCTCACCTG
TTTTTCAGGAACTACCTGTGTAGCCGGTCCATGCTGCTACACACGTACAA
AAAGCGCCACTGCAGACAAGAAGCAGACCACCTTTTGTGGAGCTAGCTGA
GATTACCTTGCCTTCGATCTCTCGTCGTGGGCCTTCTCCTCGCCACAGCT
TTCTTTCCCTCCCCTTCGCTTCCCTCTCTTTCGTCTCTGCATCTTCTGTC
GTTCTTGTTCGGCCGTTTGAACTGTTCGCACAGGATTCGTCCCGGCATCG
TCCGATCTCGGAACCACCATAGTTGTCCTCGCTGTTTTCGCGGGGCTGTA
CGCTGCCGTGTTTCTCTGGTGGATTCGCCGAAATCGTCGG
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Coding sequence (CDS) from alignment at C-linearis_contig8:2212855..2213644+

>mRNA_C-linearis_contig8.15650.1 ID=mRNA_C-linearis_contig8.15650.1|Name=mRNA_C-linearis_contig8.15650.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at C-linearis_contig8:2212855..2213644+ (Chordaria linearis ClinC8C monoicous)
GTTTTCGGCCCCGCCAACTGCGCTGTGGTATCGTCAGTTGGTGACTGCCA
GTCCAACCTGGAGCGGCCGGTGTCGCAGGAGTGGGTAGCGAACTCTCCCT
GCTTGGGCCGGTTCGAAAACCCTGTGCACGACAGCGTCGCCTGTGGTTTT
CGGCCCCGCCAACTGCGCTGTGGTATCGTCAGTTGGTGACTGCCAGTCCA
ACCTGGAGCGGCCGGTGTCGCAGGAGTGGGTAGCGAACTCTCCCTGCTTG
GGCCGGTTCGAAAACCCTGTGCACGACAGCGTCGCCTGTGGATTCGTCCC
GGCATCGTCCGATCTCGGAACCACCATAGTTGTCCTCGCTGTTTTCGCGG
GGCTGTACGCTGCCGTGTTTCTCTGGTGGATTCGCCGAAATCGTCGGGAT
TCGTCCCGGCATCGTCCGATCTCGGAACCACCATAGTTGTCCTCGCTGTT
TTCGCGGGGCTGTACGCTGCCGTGTTTCTCTGGTGGATTCGCCGAAATCG
TCGG
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