prot_C-linearis_contig8.15650.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15650.1
Unique Nameprot_C-linearis_contig8.15650.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length84
Homology
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BLAST of mRNA_C-linearis_contig8.15650.1 vs. uniprot
Match: D8LI90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI90_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.960e-37
Identity = 59/83 (71.08%), Postives = 70/83 (84.34%), Query Frame = 0 
Query:    1 VFGPANCAVVSSVGDCQSNLERPVSQEWVANSPCLGRFENPVHDSVACGFVPASSDLGTTIVVLAVFAGLYAAVFLWWIRRNR 83
            VFGPANCAV+S+VGDCQS+L RPVSQ+W A SPC+G+F++P H  + CG++P  SDLGTTIVV A FAGLYAAV LWWIRR R
Sbjct:  288 VFGPANCAVMSTVGDCQSDLWRPVSQQWAARSPCIGQFDDPEHSGIGCGYIPLKSDLGTTIVVCAAFAGLYAAVILWWIRRER 370
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI90_ECTSI1.960e-3771.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..84
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..79
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..59
NoneNo IPR availableTMHMMTMhelixcoord: 57..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2212855..2213644 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15650.1mRNA_C-linearis_contig8.15650.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2212855..2213644 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15650.1 ID=prot_C-linearis_contig8.15650.1|Name=mRNA_C-linearis_contig8.15650.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=84bp
VFGPANCAVVSSVGDCQSNLERPVSQEWVANSPCLGRFENPVHDSVACGF
VPASSDLGTTIVVLAVFAGLYAAVFLWWIRRNRR
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