prot_C-linearis_contig8.15636.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15636.1
Unique Nameprot_C-linearis_contig8.15636.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length214
Homology
BLAST of mRNA_C-linearis_contig8.15636.1 vs. uniprot
Match: D8LUC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC2_ECTSI)

HSP 1 Score: 391 bits (1004), Expect = 5.470e-137
Identity = 202/213 (94.84%), Postives = 209/213 (98.12%), Query Frame = 0
Query:    1 MKFTAASVIVGLTSAQAFMVQPTMKTSGPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSNGDAALYKSGDQAFMTKVKIEVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLAADKPQAAGVAKVFYRDIEQLTVFARQKNGPACTKAYNDAQEHLTKYLSLI 213
            MKFTAASV+VGLT++QAFMVQPTMKT+GPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGAD ELGGGMSNYFAESDTYSPYSPYS GD ALYKS DQAFMTKVKI++LKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLAADKPQAAGVAKVFYRDIEQLTV+ARQKNGPACTKAYNDAQEHLTKYLSLI
Sbjct:    1 MKFTAASVLVGLTTSQAFMVQPTMKTAGPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADPELGGGMSNYFAESDTYSPYSPYSKGDDALYKSSDQAFMTKVKIDILKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLAADKPQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYLSLI 213          
BLAST of mRNA_C-linearis_contig8.15636.1 vs. uniprot
Match: A0A6H5KN94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN94_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 1.690e-90
Identity = 141/151 (93.38%), Postives = 148/151 (98.01%), Query Frame = 0
Query:    1 MKFTAASVIVGLTSAQAFMVQPTMKTSGPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSNGDAALYKSGDQAFMTKVKIEVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAK 151
            MKFTAASV+VGLT++QAFMVQPTMKT+GPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYS GD ALYK+ DQAFMTKVKI++LKDSQKRLQTVPGFIEGKKWEEIRSLLTAK
Sbjct:    1 MKFTAASVLVGLTTSQAFMVQPTMKTAGPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSKGDEALYKTSDQAFMTKVKIDILKDSQKRLQTVPGFIEGKKWEEIRSLLTAK 151          
BLAST of mRNA_C-linearis_contig8.15636.1 vs. uniprot
Match: A0A835ZLX1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLX1_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.510e-38
Identity = 99/215 (46.05%), Postives = 129/215 (60.00%), Query Frame = 0
Query:    1 MKFTAASVIVGLTSAQAFMVQPTMKTSGPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIG-ADQELGGGMSNYFAESDTYSPYSPYS-NGDAALYKSGDQAFMTKVKIEVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLAADKPQAAGVAKVFYRDIEQLTVFARQKNGPACTKAYNDAQEHLTKYLSLI 213
            M   A  ++  L   QAF+  P+M  +    G SRADFAK++   VA TAA   PALA  G   KQN FGVIG A    GGGMS+ ++E+DTYSPYSPYS   D     +G    M+K  I+V+KD + R + +PG++ G KW EIR+ LT KAYSLR AMN LAA  P+A   AK +Y D+E +   AR K+G   + AY  +   L+ YLS +
Sbjct:    1 MAIKAVVLLAVLAVCQAFV--PSMTANS---GLSRADFAKVLAAGVAGTAA---PALAL-GASPKQNLFGVIGTAPMVGGGGMSSPYSEADTYSPYSPYSATEDGTAVYTGVTDEMSKRYIDVIKDCKNRFEKIPGWVAGSKWMEIRAELTRKAYSLRGAMNALAAS-PEAKAAAKDYYADLEVMMTEARNKDGAKISAAYAKSVSDLSTYLSKL 205          
BLAST of mRNA_C-linearis_contig8.15636.1 vs. uniprot
Match: K0SUU3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUU3_THAOC)

HSP 1 Score: 78.2 bits (191), Expect = 3.440e-14
Identity = 58/172 (33.72%), Postives = 89/172 (51.74%), Query Frame = 0
Query:   46 VAATAAVAAPALAKAGTGAKQNW--FGVIGADQELGGGMSNYFAESDT-YSPYSPYSN-GDAALYKSGDQAFMTKVKIEVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLAADKPQAAGVAKVFYRDIEQLTVFARQKNGPACTKAYNDAQEHLTKYLSLI 213
            +AA AAV APA A A  G    +  FGVIG       G +    +S   YSPYS Y N G +    S + A   + K   + +SQKRL  +P ++E K+W  ++  LT   Y  R A+  LA + P+   +AK F++ IE+ ++ A  KN   C  A  D+ + L ++++ +
Sbjct:   43 IAAAAAVIAPAAANAAAGESPRFSVFGVIGDGTSYSEGAAYGSDQSSAVYSPYSVYGNVGSSDALYSANNAGEVERKKGFIAESQKRLSKLPAYVERKEWFNVKDELTRYMYETRGAVRGLA-ETPEQKKIAKSFFQAIEEASLQATLKNQDKCAAASADSAKLLDQFVASL 213          
BLAST of mRNA_C-linearis_contig8.15636.1 vs. uniprot
Match: D5KXJ1_GALSU (Photosystem II extrinsic protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=D5KXJ1_GALSU)

HSP 1 Score: 53.1 bits (126), Expect = 5.250e-5
Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 0
Query:   56 ALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSNGDAALYKSGDQAFMTKVKIEVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLAAD------KPQAAGVAKVFYRDIEQLTVFARQKNGPACTKAYNDAQEHLTKYLS 211
            A AK+G  AK + FGV G        +S+ F  +D  S   P       LYK+ ++  +++   + + D +  L  +PG+I  K WE+I+SL+  +   LR A   + A       + +A  +   F + IE +   ARQKNG    +A   A + L ++ S
Sbjct:   78 ASAKSGESAKLSIFGVEG--------LSSPFT-ADLKSKGQP-------LYKNLNEEEISRYT-KAITDGKASLSKIPGYINEKSWEDIKSLVRQRVADLRSAQKKMMASISEQRIRQKAEKLYDSFIKSIEDIDYAARQKNGDKVRQAQQQAMKLLQEWAS 222          
BLAST of mRNA_C-linearis_contig8.15636.1 vs. uniprot
Match: D6PTH0_GALSU (Photosystem II Q n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=D6PTH0_GALSU)

HSP 1 Score: 53.1 bits (126), Expect = 5.290e-5
Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 0
Query:   56 ALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSNGDAALYKSGDQAFMTKVKIEVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLAAD------KPQAAGVAKVFYRDIEQLTVFARQKNGPACTKAYNDAQEHLTKYLS 211
            A AK+G  AK + FGV G        +S+ F  +D  S   P       LYK+ ++  +++   + + D +  L  +PG+I  K WE+I+SL+  +   LR A   + A       + +A  +   F + IE +   ARQKNG    +A   A + L ++ S
Sbjct:   79 ASAKSGESAKLSIFGVEG--------LSSPFT-ADLKSKGQP-------LYKNLNEEEISRYT-KAITDGKASLSKIPGYINEKSWEDIKSLVRQRVADLRSAQKKMMASISEQRIRQKAEKLYDSFIKSIEDIDYAARQKNGDKVRQAQQQAMKLLQEWAS 223          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15636.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LUC2_ECTSI5.470e-13794.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN94_9PHAE1.690e-9093.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZLX1_9STRA1.510e-3846.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0SUU3_THAOC3.440e-1433.72Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
D5KXJ1_GALSU5.250e-529.01Photosystem II extrinsic protein n=1 Tax=Galdieria... [more]
D6PTH0_GALSU5.290e-529.01Photosystem II Q n=1 Tax=Galdieria sulphuraria Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008797Oxygen-evolving enhancer protein 3PFAMPF05757PsbQcoord: 122..208
e-value: 1.1E-6
score: 28.5
IPR023222PsbQ-like domain superfamilyGENE3D1.20.120.290coord: 99..213
e-value: 8.1E-21
score: 76.1
IPR023222PsbQ-like domain superfamilySUPERFAMILY101112Oxygen-evolving enhancer protein 3,coord: 117..213
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..213
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..15
score: 0.537

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2130616..2135740 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15636.1mRNA_C-linearis_contig8.15636.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2130616..2135859 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15636.1 ID=prot_C-linearis_contig8.15636.1|Name=mRNA_C-linearis_contig8.15636.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=214bp
MKFTAASVIVGLTSAQAFMVQPTMKTSGPDGGSSRADFAKLVTGTVAATA
AVAAPALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSN
GDAALYKSGDQAFMTKVKIEVLKDSQKRLQTVPGFIEGKKWEEIRSLLTA
KAYSLRDAMNTLAADKPQAAGVAKVFYRDIEQLTVFARQKNGPACTKAYN
DAQEHLTKYLSLI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008797PSII_PsbQ
IPR023222PsbQ-like_dom_sf