prot_C-linearis_contig8.15584.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15584.1
Unique Nameprot_C-linearis_contig8.15584.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length290
Homology
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BLAST of mRNA_C-linearis_contig8.15584.1 vs. uniprot
Match: D7G0A2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A2_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 9.240e-84
Identity = 158/245 (64.49%), Postives = 178/245 (72.65%), Query Frame = 0 
Query:   44 RFTEEIEVLRSKYGELDQDVLIVKLLVEEFSFTTVEVDDLPALRTQPRDKDKVYLLGETHFGQKPPSACVELTNIKPKALEMAGDEKLSTVAREALPANTKTSKKAVELMGSTKVVTEKKALKRLGSEMSESMRVLQLKTERKEQKEEENRRLNTPTVTEPRGG----GAGAXXXXXXXXXGERRGGDGIGALGDKALSPRESTANLRVGSPGSFAASPMARRATRLLTEVPKFISDMGIGVGSK 284
            RF EEIEVLR+K+GE+DQD LIVKLL+EEFSFTTVE  DL AL+T+PRDK KVYLLGET+F Q P +  V+ +N+KPKALEM GDEKL+T AREALPANT+TSKKAVELMGSTKVVTEKKALKRLGSEMS+SMRVLQ+KTERKE                        G GA            R  DG+  L    LSP +S A +RV SPGSFA+SPMARRATRLLTEVPKFI+DMG G   K
Sbjct:    6 RFAEEIEVLRAKHGEVDQDGLIVKLLMEEFSFTTVEATDLQALKTRPRDKGKVYLLGETNFMQSPLTERVDYSNLKPKALEMVGDEKLNTEAREALPANTRTSKKAVELMGSTKVVTEKKALKRLGSEMSDSMRVLQIKTERKEXXXXXXXXXXXXXXXXXXXXXXDKGVGADGG---------RAADGVTQL---TLSPTKSMATMRVSSPGSFASSPMARRATRLLTEVPKFIADMGGGSSKK 238
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15584.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0A2_ECTSI9.240e-8464.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1578858..1580932 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15584.1mRNA_C-linearis_contig8.15584.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 1578858..1580932 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15584.1 ID=prot_C-linearis_contig8.15584.1|Name=mRNA_C-linearis_contig8.15584.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=290bp
MGAGGSVAQELASPRLHGKCRALQGHCSTTGSQYREMLEHFRNRFTEEIE
VLRSKYGELDQDVLIVKLLVEEFSFTTVEVDDLPALRTQPRDKDKVYLLG
ETHFGQKPPSACVELTNIKPKALEMAGDEKLSTVAREALPANTKTSKKAV
ELMGSTKVVTEKKALKRLGSEMSESMRVLQLKTERKEQKEEENRRLNTPT
VTEPRGGGAGAGGAGGGGAAGERRGGDGIGALGDKALSPRESTANLRVGS
PGSFAASPMARRATRLLTEVPKFISDMGIGVGSKADLPK*
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