mRNA_C-linearis_contig8.15584.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15584.1
Unique NamemRNA_C-linearis_contig8.15584.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15584.1 vs. uniprot
Match: D7G0A2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A2_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 9.240e-84
Identity = 158/245 (64.49%), Postives = 178/245 (72.65%), Query Frame = 1 
Query:  130 RFTEEIEVLRSKYGELDQDVLIVKLLVEEFSFTTVEVDDLPALRTQPRDKDKVYLLGETHFGQKPPSACVELTNIKPKALEMAGDEKLSTVAREALPANTKTSKKAVELMGSTKVVTEKKALKRLGSEMSESMRVLQLKTERKEQKEEENRRLNTPTVTEPRGG----GAGAXXXXXXXXXGERRGGDGIGALGDKALSPRESTANLRVGSPGSFAASPMARRATRLLTEVPKFISDMGIGVGSK 852
            RF EEIEVLR+K+GE+DQD LIVKLL+EEFSFTTVE  DL AL+T+PRDK KVYLLGET+F Q P +  V+ +N+KPKALEM GDEKL+T AREALPANT+TSKKAVELMGSTKVVTEKKALKRLGSEMS+SMRVLQ+KTERKE                        G GA            R  DG+  L    LSP +S A +RV SPGSFA+SPMARRATRLLTEVPKFI+DMG G   K
Sbjct:    6 RFAEEIEVLRAKHGEVDQDGLIVKLLMEEFSFTTVEATDLQALKTRPRDKGKVYLLGETNFMQSPLTERVDYSNLKPKALEMVGDEKLNTEAREALPANTRTSKKAVELMGSTKVVTEKKALKRLGSEMSDSMRVLQIKTERKEXXXXXXXXXXXXXXXXXXXXXXDKGVGADGG---------RAADGVTQL---TLSPTKSMATMRVSSPGSFASSPMARRATRLLTEVPKFIADMGGGSSKK 238
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0A2_ECTSI9.240e-8464.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1578858..1580932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_005090.1
Exons3
Model size870
Cds size870
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15584.1prot_C-linearis_contig8.15584.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1578858..1580932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930531.2749827-CDS-C-linearis_contig8:1578857..15793641622930531.2749827-CDS-C-linearis_contig8:1578857..1579364Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1578858..1579364 -
1690881117.3136423-CDS-C-linearis_contig8:1578857..15793641690881117.3136423-CDS-C-linearis_contig8:1578857..1579364Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1578858..1579364 -
1622930531.2878022-CDS-C-linearis_contig8:1579804..15800381622930531.2878022-CDS-C-linearis_contig8:1579804..1580038Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1579805..1580038 -
1690881117.3267696-CDS-C-linearis_contig8:1579804..15800381690881117.3267696-CDS-C-linearis_contig8:1579804..1580038Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1579805..1580038 -
1622930531.3004527-CDS-C-linearis_contig8:1580803..15809321622930531.3004527-CDS-C-linearis_contig8:1580803..1580932Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1580804..1580932 -
1690881117.3454108-CDS-C-linearis_contig8:1580803..15809321690881117.3454108-CDS-C-linearis_contig8:1580803..1580932Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1580804..1580932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15584.1

>prot_C-linearis_contig8.15584.1 ID=prot_C-linearis_contig8.15584.1|Name=mRNA_C-linearis_contig8.15584.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=290bp
MGAGGSVAQELASPRLHGKCRALQGHCSTTGSQYREMLEHFRNRFTEEIE
VLRSKYGELDQDVLIVKLLVEEFSFTTVEVDDLPALRTQPRDKDKVYLLG
ETHFGQKPPSACVELTNIKPKALEMAGDEKLSTVAREALPANTKTSKKAV
ELMGSTKVVTEKKALKRLGSEMSESMRVLQLKTERKEQKEEENRRLNTPT
VTEPRGGGAGAGGAGGGGAAGERRGGDGIGALGDKALSPRESTANLRVGS
PGSFAASPMARRATRLLTEVPKFISDMGIGVGSKADLPK*
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mRNA from alignment at C-linearis_contig8:1578858..1580932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15584.1 ID=mRNA_C-linearis_contig8.15584.1|Name=mRNA_C-linearis_contig8.15584.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2075bp|location=Sequence derived from alignment at C-linearis_contig8:1578858..1580932- (Chordaria linearis ClinC8C monoicous)
ATGGGCGCCGGAGGCTCGGTTGCTCAAGAACTCGCCTCGCCTAGGCTTCA
TGGCAAATGCCGCGCCCTTCAGGGGCACTGCTCCACGACAGGATCCCAGT
ACCGCGAAATGTTGGAGCATTTTCGAAACGTGAGAAGGAGGAATAATCCC
TATTAGACCATACCTGACTACTTTAGGTCTGTCTATCGATGACTGGACTT
AATGTACTCCAAGTCTCATTCTGGGAGCAGGATCAGCCGGGTAGGAAGTG
GTGGCACATAAACATAGCCTAGTCTATCATATTTTAATGGGGTCGTGCCG
TAAGTAGCTGCACATATGGGCAAACAAGTTGGCGGCATTCGAGCACTTTC
ACGCCGTACGTCTGATTCAAAAGTCACATCTAAAAAATACTCCGTAACTG
TTTATCTTCCCGCTGACTTGTTTGCGAGTTGCGCTGCTGAAGGCCGCACG
TATTGCACTTACTTAACAAATAATGACTACGCCCACGATGTCTGGAGTAC
TACATTGTGCAATCGCATAAACTGAGATCTTTTAAATAGACCAATACGAA
GTACATGGTGAAATTAGGCTAGCTATTTGTATCGCCTGCGAGCTAGCGGC
ATTATTTGCTACCTCCATCTTGCCACTTTCCGTTTTGCGTACTCTCATTG
TGTGGTCATTTGCTGTTGACTAAATCAACAAGAAATTATAGTAGCGTGCA
CAACTAGAAGCGAAAGCGAGAATCCTGCGTCCGACGTCGCCACGTGTCAA
ACACAACACCTCCAGCATGTTTTGGAACCGCGTAGTACAGCAGTGCATGC
CGTACGCTCGCACAACTCATCCAAAATCAAACTCGGAAGCCACACTCACA
TTGATTGGCCGCCAATACAAACGCACGAACCCAACAACAACCAGCGATTC
ACAGAGGAAATAGAGGTGCTGCGATCGAAATACGGGGAGTTGGACCAAGA
CGTCTTGATAGTCAAGCTCCTCGTGGAAGAGTTCTCCTTCACCACAGTGG
AGGTCGACGACCTTCCAGCCCTCAGGACGCAACCACGAGACAAGGACAAG
GTGTACCTCCTCGGAGAGACGCACTTCGGCCAAAAACCGCCGTCGGCCTG
CGTGGAGTTGACAAACATCAAACCTAAGGTGAAAGAAAAAGAGAGAGAAC
GAGCCTGTAAAATGTCTGCACTTCGTATGTATGTATATTATAACGTATGT
ATGGGTGGGGGATTTGTGTGCATGTGGCGGGGGGGATTGTCGCCTGGGAA
CATGGTGGGTGGAACCGCAAGGGGGCAGGAGCTACTAGTCTAGACTATTC
GGGGCGACCCGACTTTGTCGCGCGATGGATGGTGGTTTTCTTCGAAGGAA
AGGCAAAACTCCACGAAACCGCAGCAGCTGCAGACAATATCCACCCGTGC
CTATACGGCGCAAACGACTCAAGAGCGACAGCAGTGACTTCAAAGCACTG
CCACCCACACCAGCACCAACACCAACACTTGCAAATAAATAGTGCGTGCC
GCAAAAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAA
ACGAACAAATGCAAGCAGGCGCTCGAGATGGCGGGAGACGAGAAGCTCTC
GACCGTCGCGAGGGAAGCCCTGCCAGCCAACACCAAGACGAGCAAGAAGG
CCGTGGAGCTCATGGGGTCGACCAAGGTGGTCACCGAGAAAAAGGCCCTC
AAGCGCTTGGGGAGCGAGATGTCCGAGAGCATGAGGGTGCTGCAGCTCAA
GACGGAGCGGAAGGAGCAGAAGGAAGAAGAAAACCGGCGATTAAACACGC
CAACGGTAACGGAACCCAGGGGGGGGGGCGCGGGCGCGGGCGGGGCCGGC
GGCGGGGGCGCCGCCGGGGAACGGAGGGGGGGCGACGGGATCGGGGCACT
AGGGGACAAGGCTTTGAGCCCGAGAGAATCGACGGCGAACCTGAGAGTAG
GCTCGCCAGGCAGTTTTGCAGCTTCGCCCATGGCTCGGCGAGCGACTCGT
CTGCTCACGGAGGTGCCAAAATTCATCAGCGACATGGGGATCGGCGTCGG
CTCCAAGGCAGACCTGCCAAAGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig8:1578858..1580932-

>mRNA_C-linearis_contig8.15584.1 ID=mRNA_C-linearis_contig8.15584.1|Name=mRNA_C-linearis_contig8.15584.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at C-linearis_contig8:1578858..1580932- (Chordaria linearis ClinC8C monoicous)
ATGGGCGCCGGAGGCTCGGTTGCTCAAGAACTCGCCTCGCCTAGGCTTCA
TGGCAAATGCCGCGCCCTTCAGGGGCACTGCTCCACGACAGGATCCCAGT
ACCGCGAAATGTTGGAGCATTTTCGAAACATGGGCGCCGGAGGCTCGGTT
GCTCAAGAACTCGCCTCGCCTAGGCTTCATGGCAAATGCCGCGCCCTTCA
GGGGCACTGCTCCACGACAGGATCCCAGTACCGCGAAATGTTGGAGCATT
TTCGAAACCGATTCACAGAGGAAATAGAGGTGCTGCGATCGAAATACGGG
GAGTTGGACCAAGACGTCTTGATAGTCAAGCTCCTCGTGGAAGAGTTCTC
CTTCACCACAGTGGAGGTCGACGACCTTCCAGCCCTCAGGACGCAACCAC
GAGACAAGGACAAGGTGTACCTCCTCGGAGAGACGCACTTCGGCCAAAAA
CCGCCGTCGGCCTGCGTGGAGTTGACAAACATCAAACCTAAGCGATTCAC
AGAGGAAATAGAGGTGCTGCGATCGAAATACGGGGAGTTGGACCAAGACG
TCTTGATAGTCAAGCTCCTCGTGGAAGAGTTCTCCTTCACCACAGTGGAG
GTCGACGACCTTCCAGCCCTCAGGACGCAACCACGAGACAAGGACAAGGT
GTACCTCCTCGGAGAGACGCACTTCGGCCAAAAACCGCCGTCGGCCTGCG
TGGAGTTGACAAACATCAAACCTAAGGCGCTCGAGATGGCGGGAGACGAG
AAGCTCTCGACCGTCGCGAGGGAAGCCCTGCCAGCCAACACCAAGACGAG
CAAGAAGGCCGTGGAGCTCATGGGGTCGACCAAGGTGGTCACCGAGAAAA
AGGCCCTCAAGCGCTTGGGGAGCGAGATGTCCGAGAGCATGAGGGTGCTG
CAGCTCAAGACGGAGCGGAAGGAGCAGAAGGAAGAAGAAAACCGGCGATT
AAACACGCCAACGGTAACGGAACCCAGGGGGGGGGGCGCGGGCGCGGGCG
GGGCCGGCGGCGGGGGCGCCGCCGGGGAACGGAGGGGGGGCGACGGGATC
GGGGCACTAGGGGACAAGGCTTTGAGCCCGAGAGAATCGACGGCGAACCT
GAGAGTAGGCTCGCCAGGCAGTTTTGCAGCTTCGCCCATGGCTCGGCGAG
CGACTCGTCTGCTCACGGAGGTGCCAAAATTCATCAGCGACATGGGGATC
GGCGTCGGCTCCAAGGCAGACCTGCCAAAGTGAGCGCTCGAGATGGCGGG
AGACGAGAAGCTCTCGACCGTCGCGAGGGAAGCCCTGCCAGCCAACACCA
AGACGAGCAAGAAGGCCGTGGAGCTCATGGGGTCGACCAAGGTGGTCACC
GAGAAAAAGGCCCTCAAGCGCTTGGGGAGCGAGATGTCCGAGAGCATGAG
GGTGCTGCAGCTCAAGACGGAGCGGAAGGAGCAGAAGGAAGAAGAAAACC
GGCGATTAAACACGCCAACGGTAACGGAACCCAGGGGGGGGGGCGCGGGC
GCGGGCGGGGCCGGCGGCGGGGGCGCCGCCGGGGAACGGAGGGGGGGCGA
CGGGATCGGGGCACTAGGGGACAAGGCTTTGAGCCCGAGAGAATCGACGG
CGAACCTGAGAGTAGGCTCGCCAGGCAGTTTTGCAGCTTCGCCCATGGCT
CGGCGAGCGACTCGTCTGCTCACGGAGGTGCCAAAATTCATCAGCGACAT
GGGGATCGGCGTCGGCTCCAAGGCAGACCTGCCAAAGTGA
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