mRNA_C-linearis_contig8.15447.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE) HSP 1 Score: 416 bits (1069), Expect = 6.870e-145 Identity = 206/257 (80.16%), Postives = 226/257 (87.94%), Query Frame = 2
Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGIN 772
WMDMHQHLPYSMARLACSSF+EGKWAGSEKAFEHAVGQE+ARA LL LWP+LYE AEW GW+EEH +LEIL DDLSEA TT EKD+LTFGMFSKL+AS EFR EV+R+A+SA EKKE+V D EN PRVSGFDMIW+FPL YEWACHAI FAPIHQQLVES FST+DTCT+KHDSREID+VRLGQFRS SRRVQRL A+NKEIR AGDKAIAVAR K +A+HA+PNERQLRKR HDT QFLRD+S KSKHG N
Sbjct: 8 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDDDAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKHDSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHAIPNERQLRKRTHDTKQFLRDQSEKSKHGSN 264
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE) HSP 1 Score: 407 bits (1047), Expect = 1.620e-134 Identity = 205/273 (75.09%), Postives = 235/273 (86.08%), Query Frame = 2
Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEDILSEES 820
WMDMHQHLPYSMARLACSSF+EGKWAGSEKA EHAVGQE+ARA LL LWP+L E AEW GW+EEH +LEIL DDLSEA TT EKD+LTFGMFSKL+AS EFR EV+R+++SA EKKE+V D E+ PRVSGFDMIW+FPL YEWA HAI FAPIHQQLV+SV STYDTCT+KHDSREI +VRLGQFRS QSRRVQRL A+NKEIR+AGDK IAVAR K +A+ A+PN+ QLRKR DT QFLRD+S KSKHG NW+V+SV++E++ SEES
Sbjct: 504 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIVVDDDAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKRVLDTKQFLRDQSEKSKHGSNWVVRSVLKEEMSSEES 776
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE) HSP 1 Score: 368 bits (944), Expect = 2.270e-123 Identity = 193/274 (70.44%), Postives = 219/274 (79.93%), Query Frame = 2
Query: 32 SMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEDILSEESEAESNASDELS 853
SM RLACSSFYEGKWAGSE+ FEHAVGQE ARALLL WP+ YE+ EW+GWEE++TF E +KLT GMFSKL AS EFR+E++R+A SAHEKK+VVSDV VEN TPRVSGFDMIW FP YEWACHA+FFAPIHQQLVES STYDT T+KHDSRE+D+VRLGQF SR SRRV+RLD+SN+EIRD GDKAIAVA K +ASHAVPNERQLR EHD +FL+DKS KSKHG W+VKSVMEE +LS E+ES AS+ LS
Sbjct: 164 SMTRLACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFRE---------------NKLTLGMFSKLAASAEFREELERYAASAHEKKKVVSDVDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLRNGEHDWRKFLKDKSEKSKHGSKWVVKSVMEE-VLSSSEESESEASENLS 421
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI) HSP 1 Score: 338 bits (867), Expect = 7.850e-114 Identity = 183/285 (64.21%), Postives = 220/285 (77.19%), Query Frame = 2
Query: 5 MDMHQHLP-YSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSD-VGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEDILSEESEAESNASDELS 853
MD H P +++ YEGKWAG++KA EHAVG+EFARALL+ LWP+ E+AEWR W+EEH L IL DLSEA T GEKDKLTFGM+++L+ S EFRKEV+ +A SAHEKKEVVSD + V+NP PRVS F MIW FPL YEWA HAIF A IH+QLV SVFS YDTCT++HDSREID+VRLGQFRS QSRR+++L ASN EIR+AG+KAIA ARA + AAS AVPNERQ RKR HD TQF+R + K+K+G W V+SV++ ESE+ES+ S ELS
Sbjct: 1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVLD----MSESESESDVSAELS 281
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI) HSP 1 Score: 161 bits (408), Expect = 1.340e-42 Identity = 98/237 (41.35%), Postives = 132/237 (55.70%), Query Frame = 2
Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKR 712
WM+ HQ LP SMAR+ C SF+ E A E AVG EFARA L V W LYE E E + L DL KD+LTFG+FS++D+ R E++++A S KEV D G T S ++ FPL Y+ CH +F PIHQQL+E+ FS +D+C +K D E+D+VR+G ++S +SR + DA+ ++IR AG K + AR K + P E RKR
Sbjct: 233 WMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALYEGEP--RTEREREYRTQLVKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANSGWGDKEV--DQGAPKGT---SALARLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE) HSP 1 Score: 145 bits (367), Expect = 6.320e-37 Identity = 90/229 (39.30%), Postives = 119/229 (51.97%), Query Frame = 2
Query: 5 MDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPN 691
M HQ LP SMAR+ C SFY A E AVG EFARA V WP LYE E E + L DL KD+LT G+FS +D R E++++A S KE+ E+ S ++ PL Y CH +F PIHQQL+E+ FS YD+C KK D E+D+VR+G ++S +SR + +DA + +IR AG K + A K + PN
Sbjct: 235 MQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFPHVAWPGLYEGEP--RTERERQYRTQLAKDLGGTTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGWGDKEID-----ESAPKGTSALARLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATEAKAISHARKPN 456
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.080e-31 Identity = 80/190 (42.11%), Postives = 105/190 (55.26%), Query Frame = 2
Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRS 571
WM HQ LP SMAR+ C SFY + A E AVG E+ARA L V WP+ YE E R E E + L +D KD+LTFG+FS ++ E R EV+ +A S KEV + + T V F+ FP Y++ C +F PIHQQL+E+ FS YDTC KK D +D VR+G +++
Sbjct: 184 WMQRHQELPLSMARIGCPSFYARMGIMGKGAVEQAVGPEYARAFLHVGWPERYEG-EPRS-EREREYRVQLGEDFGGVIDARRKDELTFGLFSIVEEDAEMRCEVEGYAESGFGDKEV-DEEAEKGTTALVRLFEK---FPRLYKFVCVRFYFVPIHQQLIEAFFSKYDTCAKKTDVAVMDSVRVGSWQT 367
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.030e-26 Identity = 70/171 (40.94%), Postives = 86/171 (50.29%), Query Frame = 2
Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTC 514
WM HQ LP SMAR+ C SFY A E AVG EFARA L V WP LYE E E + L DL KD+LTFG+FS +D R E++++A S KE+ E+ S + FPL Y+ CH +F PIHQQL+E+ FS C
Sbjct: 159 WMQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFLHVAWPGLYEGEP--RTEREREYRTQLVKDLGGTTEARRKDELTFGLFSCIDGDLSVRSELEQYANSGWGNKEID-----ESAPKSTSELARLLDFPLLYQLVCHRFYFVPIHQQLIEAFFSKNIVC 322
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JQF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF6_9PHAE) HSP 1 Score: 108 bits (271), Expect = 6.570e-24 Identity = 66/159 (41.51%), Postives = 84/159 (52.83%), Query Frame = 2
Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQ 478
WM+ HQ LP SMAR+ C SFY +E A E AVG +FARA L V WP LY+ E E F L E KD+LTFG+FS +D+ R E++++A S KEV D G T S ++ +PL Y+ CH +F PIHQQ
Sbjct: 147 WMERHQQLPLSMARIGCPSFYARTGIMAEGAVEQAVGPKFARAFLHVAWPGLYDGEP--RTEREREFRTQLVKYSGEITEARRKDELTFGLFSCIDSDLSVRNELEQYANSGWSDKEV--DQGAPKGT---SALACLFDYPLLYKLVCHRFYFVPIHQQ 298
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 7.080e-7 Identity = 30/55 (54.55%), Postives = 34/55 (61.82%), Query Frame = 2
Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYEN 166
WM+ HQ LP SMAR+AC SFY ++ A E G EFARA L V WP LYE
Sbjct: 193 WMERHQQLPLSMARIACPSFYARTGIMADGAVE---GPEFARAFLHVAWPGLYEG 244 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15447.1 >prot_C-linearis_contig8.15447.1 ID=prot_C-linearis_contig8.15447.1|Name=mRNA_C-linearis_contig8.15447.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp MDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDback to top mRNA from alignment at C-linearis_contig8:96140..96992+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15447.1 ID=mRNA_C-linearis_contig8.15447.1|Name=mRNA_C-linearis_contig8.15447.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=853bp|location=Sequence derived from alignment at C-linearis_contig8:96140..96992+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:96140..96992+ >mRNA_C-linearis_contig8.15447.1 ID=mRNA_C-linearis_contig8.15447.1|Name=mRNA_C-linearis_contig8.15447.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig8:96140..96992+ (Chordaria linearis ClinC8C monoicous)back to top |