mRNA_C-linearis_contig8.15815.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15815.1
Unique NamemRNA_C-linearis_contig8.15815.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:3662053..3663962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size709
Cds size669
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15815.1prot_C-linearis_contig8.15815.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 3662092..3663962 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930503.3531935-UTR-C-linearis_contig8:3662052..36620911622930503.3531935-UTR-C-linearis_contig8:3662052..3662091Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3662053..3662091 +
1690881103.1402018-UTR-C-linearis_contig8:3662052..36620911690881103.1402018-UTR-C-linearis_contig8:3662052..3662091Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3662053..3662091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930503.371062-CDS-C-linearis_contig8:3662091..36621151622930503.371062-CDS-C-linearis_contig8:3662091..3662115Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3662092..3662115 +
1690881103.150092-CDS-C-linearis_contig8:3662091..36621151690881103.150092-CDS-C-linearis_contig8:3662091..3662115Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3662092..3662115 +
1622930503.3844535-CDS-C-linearis_contig8:3663317..36639621622930503.3844535-CDS-C-linearis_contig8:3663317..3663962Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3663318..3663962 +
1690881103.158865-CDS-C-linearis_contig8:3663317..36639621690881103.158865-CDS-C-linearis_contig8:3663317..3663962Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3663318..3663962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15815.1

>prot_C-linearis_contig8.15815.1 ID=prot_C-linearis_contig8.15815.1|Name=mRNA_C-linearis_contig8.15815.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=223bp
MAPSLSLLQRCLASLLVAQCSLGTNTHTQQPSVPRPTAATARAAWSRRRT
AAAAFLAAPPARPGDSSGSSTGGSLEHLLRVLRLDDAIFALHQQPRQHPR
RGEHVTAAVAAAAYNNIGRPPLTCWSKDQWTPRRDVSKWPSQRSHRQRTT
RLTSWSKCQWSPTSYQPPVWRTRGSQRGGGGGGSATGARWQAGGGRARDW
SKVQWTPLDDSSSSRAGATRLQG
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mRNA from alignment at C-linearis_contig8:3662053..3663962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15815.1 ID=mRNA_C-linearis_contig8.15815.1|Name=mRNA_C-linearis_contig8.15815.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1910bp|location=Sequence derived from alignment at C-linearis_contig8:3662053..3663962+ (Chordaria linearis ClinC8C monoicous)
GTGTTCTTCTCCTGATGCACATTCACATTTCGTTTGCCGATGGCTCCTTC
GCTTTCTCTACTGGTGAGCTCTCTCTAAAGCGAATAAATAGACCGCTTTG
TAAGACCTGCGAGTGCCCGCTGGATTACTCACCTCTCTAGATGCTCTCCG
TTTACCTGCCCCTTGCTTGTCCGCGCACATGTGGCCACTTTTTTTTGCAC
CCCGTGGTCCACGCATGTGTGTGCGTGCGCGTTGTTCGTAGCTTCGCTCT
AGCTCATGTCAGCGCTGCACGCAGGTTTTCCATTTGGGTGCAGACATCCT
TTGTGTCTTACTGTTACCGCTCCTCCTCAAACCAATCAAACACGGCCTTC
GTCCTGTCAAAGGGAAAGGCAGCCGATCACAGGACCCTAAGATATCATTC
GGCCGATGTACATACAAAAAAAAAAAAATCGTTGCATTCGTTCATTTTTG
TCGAGCCGCGCTGTTGGCCGGGTGCGAAACCCGCTTGGTCGCGAGAGAGA
CGGAAAGAGAGTGTGTCCGATCGGCGCTCTACGCACGTCTGTTGGTTCCT
CGTGTAGGGGGTGGCCATGCGCGGTTCATTTGTAGCCGAAAGGGGCGAAG
TTTTCTCGACCCTTTCGAGAAAATGAACGAGTCACACGTGTGTGTTTTGC
GAAAGAGCCGACGACACAAGCAATGGACAAGCAATGGATTTTGGTCTTCA
CTCTCCCCGTTGGAATGATCCGTGATGCCGGGAGATAGGAAGGCGAAAAC
ACTGCAGCCTGAGCGTCAGCGTGGCCGCACACACGCGCGCTAGCAACACC
AACGCGCATATCGATCTCAATCTCTTTTTTCGCGCAAAAAAAAAAACTTG
GCGCGAATCTCCACCCTTCGTGTTGCCGTGTTGATCCGTATCCGTGTGTG
TCAGCCGATATATCTATTCTATATGTACAGAGGCAGAGCTCGTTTCAGCC
ACAGCTCACCTATAATAATGGAGTCATCTGTTATATCTCTGAGGATCCAG
GGTAGCCCCGAACCCAACCCCCCCGTCCACCCGTGTGATTGACAGTTTCC
AAGCCGAAATCGACAGAAGTTTAAGTATCTCCGTTCCTAGACTACTGTTG
TGATGCATGTGGTGGACGCTCACAAAAGCGGCGAAACAGCTCTGCTGCCA
AGCCGATCTTGGAATTTTCCCCTGCCGTGTGACCTTTAACCTCGCGTCGT
TGTCCTCCCAATCGGCGCTCATCGTGGTCGTTGTCGCCGTACTAAACAAC
AAAAATCCGAAATAGCAACGGTGCTTGGCATCGTTGTTGGTGGCACAATG
CAGCTTGGGCACCAACACACACACACAACAACCATCCGTGCCAAGACCAA
CAGCAGCAACAGCGAGAGCAGCGTGGTCCCGCCGCCGTACCGCCGCCGCC
GCCTTCCTGGCAGCGCCGCCCGCCCGGCCCGGCGACAGCAGCGGTAGCTC
CACCGGCGGCAGCCTCGAGCACCTCTTAAGGGTGCTCCGCCTGGACGACG
CCATCTTCGCCCTGCACCAGCAGCCACGGCAGCACCCGCGGCGAGGGGAG
CACGTAACCGCGGCGGTGGCCGCGGCCGCGTACAACAATATCGGTAGGCC
GCCGCTCACCTGCTGGTCGAAGGACCAGTGGACGCCCCGCCGGGACGTGT
CCAAGTGGCCCAGCCAGCGGTCCCACCGGCAGCGAACGACCCGGCTCACG
TCCTGGTCCAAGTGCCAGTGGTCGCCGACGTCATACCAGCCGCCGGTGTG
GCGGACGCGGGGCTCGCAGCGTGGGGGAGGCGGCGGCGGCTCCGCGACAG
GGGCAAGATGGCAGGCGGGAGGAGGGAGGGCGAGAGACTGGTCCAAGGTG
CAGTGGACGCCCCTGGACGACAGCTCTAGCTCGAGGGCGGGGGCGACGCG
GTTGCAGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig8:3662053..3663962+

>mRNA_C-linearis_contig8.15815.1 ID=mRNA_C-linearis_contig8.15815.1|Name=mRNA_C-linearis_contig8.15815.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at C-linearis_contig8:3662053..3663962+ (Chordaria linearis ClinC8C monoicous)
ATGGCTCCTTCGCTTTCTCTACTGATGGCTCCTTCGCTTTCTCTACTGCA
ACGGTGCTTGGCATCGTTGTTGGTGGCACAATGCAGCTTGGGCACCAACA
CACACACACAACAACCATCCGTGCCAAGACCAACAGCAGCAACAGCGAGA
GCAGCGTGGTCCCGCCGCCGTACCGCCGCCGCCGCCTTCCTGGCAGCGCC
GCCCGCCCGGCCCGGCGACAGCAGCGGTAGCTCCACCGGCGGCAGCCTCG
AGCACCTCTTAAGGGTGCTCCGCCTGGACGACGCCATCTTCGCCCTGCAC
CAGCAGCCACGGCAGCACCCGCGGCGAGGGGAGCACGTAACCGCGGCGGT
GGCCGCGGCCGCGTACAACAATATCGGTAGGCCGCCGCTCACCTGCTGGT
CGAAGGACCAGTGGACGCCCCGCCGGGACGTGTCCAAGTGGCCCAGCCAG
CGGTCCCACCGGCAGCGAACGACCCGGCTCACGTCCTGGTCCAAGTGCCA
GTGGTCGCCGACGTCATACCAGCCGCCGGTGTGGCGGACGCGGGGCTCGC
AGCGTGGGGGAGGCGGCGGCGGCTCCGCGACAGGGGCAAGATGGCAGGCG
GGAGGAGGGAGGGCGAGAGACTGGTCCAAGGTGCAGTGGACGCCCCTGGA
CGACAGCTCTAGCTCGAGGGCGGGGGCGACGCGGTTGCAGGGGCAACGGT
GCTTGGCATCGTTGTTGGTGGCACAATGCAGCTTGGGCACCAACACACAC
ACACAACAACCATCCGTGCCAAGACCAACAGCAGCAACAGCGAGAGCAGC
GTGGTCCCGCCGCCGTACCGCCGCCGCCGCCTTCCTGGCAGCGCCGCCCG
CCCGGCCCGGCGACAGCAGCGGTAGCTCCACCGGCGGCAGCCTCGAGCAC
CTCTTAAGGGTGCTCCGCCTGGACGACGCCATCTTCGCCCTGCACCAGCA
GCCACGGCAGCACCCGCGGCGAGGGGAGCACGTAACCGCGGCGGTGGCCG
CGGCCGCGTACAACAATATCGGTAGGCCGCCGCTCACCTGCTGGTCGAAG
GACCAGTGGACGCCCCGCCGGGACGTGTCCAAGTGGCCCAGCCAGCGGTC
CCACCGGCAGCGAACGACCCGGCTCACGTCCTGGTCCAAGTGCCAGTGGT
CGCCGACGTCATACCAGCCGCCGGTGTGGCGGACGCGGGGCTCGCAGCGT
GGGGGAGGCGGCGGCGGCTCCGCGACAGGGGCAAGATGGCAGGCGGGAGG
AGGGAGGGCGAGAGACTGGTCCAAGGTGCAGTGGACGCCCCTGGACGACA
GCTCTAGCTCGAGGGCGGGGGCGACGCGGTTGCAGGGG
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