mRNA_C-linearis_contig79.15427.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig79.15427.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE) HSP 1 Score: 252 bits (643), Expect = 5.370e-73 Identity = 126/186 (67.74%), Postives = 149/186 (80.11%), Query Frame = 3
Query: 501 RRCRCRWIISQVQAFKEHMNRVEELFEAAGHVCTFLAKYHPECNAIERFWRYTKSIEHRMCDYSVLGLLARLPVTLSTVSLALCRKWSRVSWLYIHAYSAGLKGYLRTRELKTWTNHRSPTNTADNVLLACSRETTPEERMTRELVALAAAKKARLDSNKTINEIVKKYREMNIPPISL*GQRRRH 1058
RRC C+ IIS+V+AFKE MNRVEELFEAAGH C FLAKYHPE NAI+RFW YTKSIE R+CDYSVL LLARLP+TLSTVSL+LCRKW+RVSWLYI+AYS GL+GYL+TR+LK WTNHRSPT+TADNVLLA + TT EER +E ALAAAK+ R SN+ ++I+K++ + P G R
Sbjct: 533 RRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAKYHPELNAIQRFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVLLARGQATTAEERKAKEQAALAAAKEYRKKSNEAADKILKRFVAAKLAPPHFTGSTSRR 718
BLAST of mRNA_C-linearis_contig79.15427.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE) HSP 1 Score: 254 bits (649), Expect = 1.280e-71 Identity = 127/186 (68.28%), Postives = 150/186 (80.65%), Query Frame = 3
Query: 501 RRCRCRWIISQVQAFKEHMNRVEELFEAAGHVCTFLAKYHPECNAIERFWRYTKSIEHRMCDYSVLGLLARLPVTLSTVSLALCRKWSRVSWLYIHAYSAGLKGYLRTRELKTWTNHRSPTNTADNVLLACSRETTPEERMTRELVALAAAKKARLDSNKTINEIVKKYREMNIPPISL*GQRRRH 1058
RRC C+ IIS+V+AFKE MNRVEELFEAAGH C FLAKYHPE NAIERFW YTKSIE R+CDYSVL LLARLP+TLSTVSL+LCRKW+RVSWLYI+AYS GL+GYL+TR+LK WTNHRSPT+TADNVLLA + TT EER +E ALAAAK+AR SN+ ++++K++ + P G R
Sbjct: 981 RRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAKYHPELNAIERFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVLLARGQATTAEERKAKEQAALAAAKEARKKSNEAADKMLKRFVAAKLAPPHFTGSTSRR 1166
BLAST of mRNA_C-linearis_contig79.15427.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE) HSP 1 Score: 231 bits (590), Expect = 1.930e-67 Identity = 112/144 (77.78%), Postives = 127/144 (88.19%), Query Frame = 3
Query: 501 RRCRCRWIISQVQAFKEHMNRVEELFEAAGHVCTFLAKYHPECNAIERFWRYTKSIEHRMCDYSVLGLLARLPVTLSTVSLALCRKWSRVSWLYIHAYSAGLKGYLRTRELKTWTNHRSPTNTADNVLLACSRETTPEERMTRE 932
RRC C+ IIS+V+AFKE MNRVEELFEAAGH C FLAKYHPE NAIERFW YTKSIE R+CDYSVL LLARLP+TLSTV+L+LCRKW+RVSWLYI+AYS GL+GYL+TR+LK WTNHRSPT+TADNVLLA + TT EER +E
Sbjct: 340 RRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAKYHPELNAIERFWGYTKSIERRVCDYSVLSLLARLPMTLSTVTLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVLLARGQATTAEERKAKE 483
BLAST of mRNA_C-linearis_contig79.15427.1 vs. uniprot
Match: A0A6H5K8V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V9_9PHAE) HSP 1 Score: 179 bits (454), Expect = 2.180e-48 Identity = 89/140 (63.57%), Postives = 110/140 (78.57%), Query Frame = 3
Query: 639 ERFWRYTKSIEHRMCDYSVLGLLARLPVTLSTVSLALCRKWSRVSWLYIHAYSAGLKGYLRTRELKTWTNHRSPTNTADNVLLACSRETTPEERMTRELVALAAAKKARLDSNKTINEIVKKYREMNIPPISL*GQRRRH 1058
+RFW YTKSIE R+CDYSVL LLARLP+TLSTVSL+LCRKW+RVSWLYI+AYS GL+GYL+TR+LK WTNHRSPT+TADNVLLA + TT EER +E ALAAAK+AR SN+ ++++K++ + P G R
Sbjct: 256 QRFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVLLARGQATTAEERKAKEQAALAAAKEARKKSNEAADKMLKRFVAAKVAPPHFTGSTSRR 395
BLAST of mRNA_C-linearis_contig79.15427.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE) HSP 1 Score: 175 bits (443), Expect = 9.160e-46 Identity = 83/101 (82.18%), Postives = 91/101 (90.10%), Query Frame = 3
Query: 501 RRCRCRWIISQVQAFKEHMNRVEELFEAAGHVCTFLAKYHPECNAIERFWRYTKSIEHRMCDYSVLGLLARLPVTLSTVSLALCRKWSRVSWLYIHAYSAG 803
RRC C+ IIS+V+AFKE MNRVEELFEAAGH C FLAKYHPE NAIERFW YTKSIE R+CDYSVL LLARLP+TLSTVSL+LCRKW+RVSWLYI+AYS G
Sbjct: 416 RRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAKYHPELNAIERFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHG 516
BLAST of mRNA_C-linearis_contig79.15427.1 vs. uniprot
Match: A0A6H5K4S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S4_9PHAE) HSP 1 Score: 157 bits (396), Expect = 1.120e-40 Identity = 86/208 (41.35%), Postives = 125/208 (60.10%), Query Frame = 3
Query: 501 RRCRCRWIISQVQAFKEHMNRVEELFEAAGHVCTFLAKYHPECNAIERFWRYTKSIEHRMCDYSVLGLLARLPVTLSTVSLALCRKWSRVSWLYIHAYSAGLKGYLRTRELKTWTNHRSPTNTADNVLLA-CSRETTPEERMTRELVALAAAKKARLDSNKTINEIVKKYREMNIPPISL*GQRRRHRL*CQSRA*VDI*GGLLLVIR 1121
RRC R + ++++AFK +N++E++F+ AGH+C FLAKYHPE NAIER+W Y K + C+YS+ +L LP LS V L R WSRV+WLY+ AY GL YL R+LK W +HRSPT D+V+LA T EE+ E ALAAA++ R +S K + K +++ +L + L +SR+ + + L++R
Sbjct: 123 RRCCIRKVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYVKHLLRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTERGDSVVLARAGAGKTEEEKKKAEEKALAAAQELRTESIKRAKKNFKSFKQKR----ALLSLCEKRELRPRSRSPLTLKEAFRLLVR 326
BLAST of mRNA_C-linearis_contig79.15427.1 vs. uniprot
Match: A0A6H5JT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT56_9PHAE) HSP 1 Score: 157 bits (398), Expect = 2.950e-39 Identity = 87/208 (41.83%), Postives = 125/208 (60.10%), Query Frame = 3
Query: 501 RRCRCRWIISQVQAFKEHMNRVEELFEAAGHVCTFLAKYHPECNAIERFWRYTKSIEHRMCDYSVLGLLARLPVTLSTVSLALCRKWSRVSWLYIHAYSAGLKGYLRTRELKTWTNHRSPTNTADNVLLA-CSRETTPEERMTRELVALAAAKKARLDSNKTINEIVKKYREMNIPPISL*GQRRRHRL*CQSRA*VDI*GGLLLVIR 1121
RRC R + ++++AFK +N++E++F+ AGH+C FLAKYHPE NAIER+W Y K I C+YS+ +L LP LS V L R WSRV+WLY+ AY GL YL R+LK W +HRSPT D+V+LA T EE+ E ALAAA++ R +S K + K +++ +L + L +SR+ + + L++R
Sbjct: 330 RRCCIRKVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYAKHILRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTERGDSVVLARAGAGKTEEEKKKAEEKALAAAQELRTESIKRAKKNFKSFKQKR----ALLSLCEKRELRPRSRSPLTLKEAFRLLVR 533
BLAST of mRNA_C-linearis_contig79.15427.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE) HSP 1 Score: 157 bits (396), Expect = 6.490e-38 Identity = 86/208 (41.35%), Postives = 125/208 (60.10%), Query Frame = 3
Query: 501 RRCRCRWIISQVQAFKEHMNRVEELFEAAGHVCTFLAKYHPECNAIERFWRYTKSIEHRMCDYSVLGLLARLPVTLSTVSLALCRKWSRVSWLYIHAYSAGLKGYLRTRELKTWTNHRSPTNTADNVLLA-CSRETTPEERMTRELVALAAAKKARLDSNKTINEIVKKYREMNIPPISL*GQRRRHRL*CQSRA*VDI*GGLLLVIR 1121
RRC R + ++++AFK +N++E++F+ AGH+C FLAKYHPE NAIER+W Y K + C+YS+ +L LP LS V L R WSRV+WLY+ AY GL YL R+LK W +HRSPT D+V+LA T EE+ E ALAAA++ R +S K + K +++ +L + L +SR+ + + L++R
Sbjct: 763 RRCCIRKVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYVKHLLRLSCEYSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTERGDSVVLARAGAGKTEEEKKKAEEKALAAAQELRTESIKRAKKNFKSFKQKR----ALLSLCEKRELRPRSRSPLTLKEAFRLLVR 966
BLAST of mRNA_C-linearis_contig79.15427.1 vs. uniprot
Match: A0A6H5KWI8_9PHAE (Uncharacterized protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI8_9PHAE) HSP 1 Score: 146 bits (368), Expect = 7.570e-37 Identity = 76/158 (48.10%), Postives = 99/158 (62.66%), Query Frame = 3
Query: 501 RRCRCRWIISQVQAFKEHMNRVEELFEAAGHVCTFLAKYHPECNAIERFWRYTKSIEHRMCDYSVLGLLARLPVTLSTVSLALCRKWSRVSWLYIHAYSAGLKGYLRTRELKTWTNHRSPTNTADNVLLACSRETTPEERMTRELVALAAAKKARLDS 974
RRC ++S+++AF+E +N VE+LF+A GH+C FL KYHPE NAIER+W Y K + C+YS+ +L LP LS V R WSRV+WLYI AY GL+ YL R+LK W HR T D V+ A TPE++ E ALAAA++ R S
Sbjct: 108 RRCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRVWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHREATARGDAVIQARGAGKTPEQKKAAEAKALAAAQEVRKKS 265
BLAST of mRNA_C-linearis_contig79.15427.1 vs. uniprot
Match: A0A6H5LC28_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC28_9PHAE) HSP 1 Score: 146 bits (369), Expect = 8.670e-37 Identity = 76/158 (48.10%), Postives = 99/158 (62.66%), Query Frame = 3
Query: 501 RRCRCRWIISQVQAFKEHMNRVEELFEAAGHVCTFLAKYHPECNAIERFWRYTKSIEHRMCDYSVLGLLARLPVTLSTVSLALCRKWSRVSWLYIHAYSAGLKGYLRTRELKTWTNHRSPTNTADNVLLACSRETTPEERMTRELVALAAAKKARLDS 974
RRC ++S+++AF+E +N VE+LF+A GH+C FL KYHPE NAIER+W Y K + C+YS+ +L LP LS V R WSRV+WLYI AY GL+ YL R+LK W HR T D V+ A TPE++ E ALAAA++ R S
Sbjct: 108 RRCCVVRVLSELKAFREELNMVEKLFKAHGHLCIFLPKYHPELNAIERYWGYIKHLLRLHCEYSLRHMLQVLPGALSGVPARFIRAWSRVTWLYIEAYDEGLEDYLEYRDLKEWGKHREATARGDAVIQARGAGKTPEQKKAAEAKALAAAQEVRKKS 265 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig79.15427.1 >prot_C-linearis_contig79.15427.1 ID=prot_C-linearis_contig79.15427.1|Name=mRNA_C-linearis_contig79.15427.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=225bp MWILCLWSVFSSCFFVENQAKKRSGKKLGEFKAGTVVEQGADSEVLVGVAback to top mRNA from alignment at C-linearis_contig79:646500..648285- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig79.15427.1 ID=mRNA_C-linearis_contig79.15427.1|Name=mRNA_C-linearis_contig79.15427.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1786bp|location=Sequence derived from alignment at C-linearis_contig79:646500..648285- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig79:646500..648285- >mRNA_C-linearis_contig79.15427.1 ID=mRNA_C-linearis_contig79.15427.1|Name=mRNA_C-linearis_contig79.15427.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at C-linearis_contig79:646500..648285- (Chordaria linearis ClinC8C monoicous)back to top |