mRNA_C-linearis_contig78.15352.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig78.15352.1
Unique NamemRNA_C-linearis_contig78.15352.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig78.15352.1 vs. uniprot
Match: A0A6H5JGM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.300e-8
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = -2 
Query:    3 VGNEQAAVASAGQAGWARPRGVGRHCKKRCRTCGEIDGYVSPSSHPAVGVSEGDTAGGENSSRPGVEG 206
            +G  QAA+ASAGQ GWARP  VG  C++  R CG I  +   ++   V V EGDTAGGE+SSRP V+G
Sbjct:  153 LGKIQAAIASAGQVGWARPGLVGPCCERHGR-CGGICVFHRAATKSCVVVREGDTAGGESSSRPDVDG 219
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BLAST of mRNA_C-linearis_contig78.15352.1 vs. uniprot
Match: A0A6H5KDX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX1_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.910e-8
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = -2 
Query:    3 EQAAVASAGQAGWARPRGVGRHCKKRCRTCGEIDGYVSPSSHPAVGVSEGDTAGGENSSRPGVEG 197
            +QAA+ASAGQ GWARP  VG  C++  R CG I  +   ++   V V EGDTAGGE+SSRP V+G
Sbjct:  200 DQAAIASAGQVGWARPGLVGPCCERHGR-CGGICVFHRAATKSCVVVREGDTAGGESSSRPDVDG 263
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BLAST of mRNA_C-linearis_contig78.15352.1 vs. uniprot
Match: A0A6H5JPV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.120e-8
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = -2 
Query:    6 IVGNEQAAVASAGQAGWARPRGVGRHCKKRCRTCGEIDGYVSPSSHPAVGVSEGDTAGGENSSRPGVE 209
            +V +  AA+ASAGQ GWARP  VG  C++  R CG I  +   ++   V V EGDTAGGE+SSRP V+
Sbjct:   23 VVRDPVAAIASAGQVGWARPGLVGPCCERHGR-CGGICVFHRAATKCCVVVREGDTAGGESSSRPDVD 89
[Close]
BLAST of mRNA_C-linearis_contig78.15352.1 vs. uniprot
Match: A0A6H5KXB0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXB0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.900e-8
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = -2 
Query:    3 AAVASAGQAGWARPRGVGRHCKKRCRTCGEIDGYVSPSSHPAVGVSEGDTAGGENSSRPGVEG 191
            AA+ASAGQ GWARP  VG  C++  R CG I  +   ++   V V EGDTAGGE+SSRP V+G
Sbjct:   16 AAIASAGQVGWARPGLVGPCCERHGR-CGGICVFHRAATKTCVVVREGDTAGGESSSRPDVDG 77
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGM1_9PHAE1.300e-854.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX1_9PHAE1.910e-855.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPV8_9PHAE2.120e-851.47Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KXB0_9PHAE6.900e-855.56Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:263376..263786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size412
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.7320478-CDS-C-linearis_contig78:263375..2637141622930477.7320478-CDS-C-linearis_contig78:263375..263714Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 263376..263714 +
1690881089.936237-CDS-C-linearis_contig78:263375..2637141690881089.936237-CDS-C-linearis_contig78:263375..263714Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 263376..263714 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.7476788-UTR-C-linearis_contig78:263714..2637861622930477.7476788-UTR-C-linearis_contig78:263714..263786Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 263715..263786 +
1690881089.952557-UTR-C-linearis_contig78:263714..2637861690881089.952557-UTR-C-linearis_contig78:263714..263786Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 263715..263786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15352.1prot_C-linearis_contig78.15352.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig78 263376..263714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig78.15352.1

>prot_C-linearis_contig78.15352.1 ID=prot_C-linearis_contig78.15352.1|Name=mRNA_C-linearis_contig78.15352.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=113bp
APSTPGLLLFSPPAVSPSLTPTAGWLLGETYPSISPHVRHLFLQCRPTPL
GLAHPAWPAEATAACSLPTIPSVIISIQSMELVLLSATPRCCCCRRAVLW
SQSGLLLEGEYY*
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mRNA from alignment at C-linearis_contig78:263376..263786+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig78.15352.1 ID=mRNA_C-linearis_contig78.15352.1|Name=mRNA_C-linearis_contig78.15352.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at C-linearis_contig78:263376..263786+ (Chordaria linearis ClinC8C monoicous)
GCGCCTTCCACGCCCGGTCTACTACTGTTCTCTCCTCCAGCGGTGTCGCC
TTCACTGACGCCCACCGCAGGGTGGCTGCTCGGGGAGACGTACCCATCAA
TCTCCCCGCACGTGCGACACCTCTTCTTGCAGTGTCGCCCGACTCCTCTT
GGCCTCGCCCATCCGGCTTGGCCTGCAGAAGCAACGGCAGCTTGCTCGTT
ACCCACTATACCCTCAGTTATCATCTCTATCCAGTCGATGGAGCTTGTCT
TATTATCAGCAACACCCCGTTGCTGCTGCTGTCGGCGTGCTGTGCTATGG
TCTCAAAGCGGGCTCCTTCTGGAAGGAGAATACTACTAGTGTGTTCGTGT
ATGCCCGTGGTCGTTGCTCTGAGACCAGAGAGTGTTGTTTACTGGATGTA
TTAGCTCAACG
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Coding sequence (CDS) from alignment at C-linearis_contig78:263376..263786+

>mRNA_C-linearis_contig78.15352.1 ID=mRNA_C-linearis_contig78.15352.1|Name=mRNA_C-linearis_contig78.15352.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at C-linearis_contig78:263376..263786+ (Chordaria linearis ClinC8C monoicous)
GCGCCTTCCACGCCCGGTCTACTACTGTTCTCTCCTCCAGCGGTGTCGCC
TTCACTGACGCCCACCGCAGGGTGGCTGCTCGGGGAGACGTACCCATCAA
TCTCCCCGCACGTGCGACACCTCTTCTTGCAGTGTCGCCCGACTCCTCTT
GGCCTCGCCCATCCGGCTTGGCCTGCAGAAGCAACGGCAGCTTGCTCGTT
ACCCACTATACCCTCAGTTATCATCTCTATCCAGTCGATGGAGCTTGTCT
TATTATCAGCAACACCCCGTTGCTGCTGCTGTCGGCGTGCTGTGCTATGG
TCTCAAAGCGGGCTCCTTCTGGAAGGAGAATACTACTAGGCGCCTTCCAC
GCCCGGTCTACTACTGTTCTCTCCTCCAGCGGTGTCGCCTTCACTGACGC
CCACCGCAGGGTGGCTGCTCGGGGAGACGTACCCATCAATCTCCCCGCAC
GTGCGACACCTCTTCTTGCAGTGTCGCCCGACTCCTCTTGGCCTCGCCCA
TCCGGCTTGGCCTGCAGAAGCAACGGCAGCTTGCTCGTTACCCACTATAC
CCTCAGTTATCATCTCTATCCAGTCGATGGAGCTTGTCTTATTATCAGCA
ACACCCCGTTGCTGCTGCTGTCGGCGTGCTGTGCTATGGTCTCAAAGCGG
GCTCCTTCTGGAAGGAGAATACTACTAG
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