prot_C-linearis_contig78.15374.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig78.15374.1
Unique Nameprot_C-linearis_contig78.15374.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length128
Homology
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BLAST of mRNA_C-linearis_contig78.15374.1 vs. uniprot
Match: A0A6H5JY82_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY82_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.140e-11
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 0 
Query:    2 SLPLPEYEITKQTLAACRPLTRDDVVSQLSTRFSILDKQRKAEGVKGV--QQAYIGSIDNGGGHQSRPGR 69
            SLP PEYE+TKQTL+  +PLTRD +V Q STRF++L ++ + +G KG   +QAYI     G G Q+  GR
Sbjct:   29 SLPNPEYEVTKQTLSVVKPLTRDILVQQFSTRFNLLTEEWRKKGEKGSGGEQAYIAGNGTGKGRQAGGGR 98
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15374.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JY82_9PHAE2.140e-1151.43CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:776851..777245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15374.1mRNA_C-linearis_contig78.15374.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig78 776851..777247 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig78.15374.1 ID=prot_C-linearis_contig78.15374.1|Name=mRNA_C-linearis_contig78.15374.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=128bp
ASLPLPEYEITKQTLAACRPLTRDDVVSQLSTRFSILDKQRKAEGVKGVQ
QAYIGSIDNGGGHQSRPGRSGVRPGRSGPRSWPEGRTPPQAVLPLPVAGT
SLRGLHKAGEGLPGEVRKLLGVRPQREQ
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