mRNA_C-linearis_contig78.15374.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig78.15374.1
Unique NamemRNA_C-linearis_contig78.15374.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig78.15374.1 vs. uniprot
Match: A0A6H5JY82_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY82_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.140e-11
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    4 SLPLPEYEITKQTLAACRPLTRDDVVSQLSTRFSILDKQRKAEGVKGV--QQAYIGSIDNGGGHQSRPGR 207
            SLP PEYE+TKQTL+  +PLTRD +V Q STRF++L ++ + +G KG   +QAYI     G G Q+  GR
Sbjct:   29 SLPNPEYEVTKQTLSVVKPLTRDILVQQFSTRFNLLTEEWRKKGEKGSGGEQAYIAGNGTGKGRQAGGGR 98
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JY82_9PHAE2.140e-1151.43CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:776851..777247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size388
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.4463851-CDS-C-linearis_contig78:776850..7770381622930477.4463851-CDS-C-linearis_contig78:776850..777038Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 776851..777038 +
1690881089.8132815-CDS-C-linearis_contig78:776850..7770381690881089.8132815-CDS-C-linearis_contig78:776850..777038Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 776851..777038 +
1622930477.4612238-CDS-C-linearis_contig78:777049..7772451622930477.4612238-CDS-C-linearis_contig78:777049..777245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 777050..777245 +
1690881089.8231595-CDS-C-linearis_contig78:777049..7772451690881089.8231595-CDS-C-linearis_contig78:777049..777245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 777050..777245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15374.1prot_C-linearis_contig78.15374.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig78 776851..777245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig78.15374.1

>prot_C-linearis_contig78.15374.1 ID=prot_C-linearis_contig78.15374.1|Name=mRNA_C-linearis_contig78.15374.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=128bp
ASLPLPEYEITKQTLAACRPLTRDDVVSQLSTRFSILDKQRKAEGVKGVQ
QAYIGSIDNGGGHQSRPGRSGVRPGRSGPRSWPEGRTPPQAVLPLPVAGT
SLRGLHKAGEGLPGEVRKLLGVRPQREQ
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mRNA from alignment at C-linearis_contig78:776851..777247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig78.15374.1 ID=mRNA_C-linearis_contig78.15374.1|Name=mRNA_C-linearis_contig78.15374.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=397bp|location=Sequence derived from alignment at C-linearis_contig78:776851..777247+ (Chordaria linearis ClinC8C monoicous)
GCATCGTTGCCTCTACCCGAGTACGAGATCACCAAGCAAACCCTAGCGGC
GTGCAGGCCGCTGACCAGGGACGACGTTGTAAGCCAGCTCAGCACACGGT
TCAGCATCCTCGACAAGCAGCGGAAGGCGGAAGGGGTGAAGGGGGTGCAG
CAGGCTTACATCGGGAGTATCGACAATGGTGGGGGACACGGGAAGCAGGC
CAATCGCGGCCGGGGCGGTCAGGGGTGCGACCGGGGCGGTCAGGGCCGCG
GTCGTGGCCAGAAGGGCGGACACCACCACAGGCGGTGCTACCGCTGCCGG
TGGCCGGGACATCACTCAGAGGACTGCACAAAGCCGGAGAAGGACTTCCT
GGAGAGGTGCGTAAACTGCTCGGGGTACGGCCACAACGCGAACAAGT
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Coding sequence (CDS) from alignment at C-linearis_contig78:776851..777247+

>mRNA_C-linearis_contig78.15374.1 ID=mRNA_C-linearis_contig78.15374.1|Name=mRNA_C-linearis_contig78.15374.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at C-linearis_contig78:776851..777247+ (Chordaria linearis ClinC8C monoicous)
GCATCGTTGCCTCTACCCGAGTACGAGATCACCAAGCAAACCCTAGCGGC
GTGCAGGCCGCTGACCAGGGACGACGTTGTAAGCCAGCTCAGCACACGGT
TCAGCATCCTCGACAAGCAGCGGAAGGCGGAAGGGGTGAAGGGGGTGCAG
CAGGCTTACATCGGGAGTATCGACAATGGTGGGGGACAGCATCGTTGCCT
CTACCCGAGTACGAGATCACCAAGCAAACCCTAGCGGCGTGCAGGCCGCT
GACCAGGGACGACGTTGTAAGCCAGCTCAGCACACGGTTCAGCATCCTCG
ACAAGCAGCGGAAGGCGGAAGGGGTGAAGGGGGTGCAGCAGGCTTACATC
GGGAGTATCGACAATGGTGGGGGACACCAATCGCGGCCGGGGCGGTCAGG
GGTGCGACCGGGGCGGTCAGGGCCGCGGTCGTGGCCAGAAGGGCGGACAC
CACCACAGGCGGTGCTACCGCTGCCGGTGGCCGGGACATCACTCAGAGGA
CTGCACAAAGCCGGAGAAGGACTTCCTGGAGAGGTGCGTAAACTGCTCGG
GGTACGGCCACAACGCGAACAACCAATCGCGGCCGGGGCGGTCAGGGGTG
CGACCGGGGCGGTCAGGGCCGCGGTCGTGGCCAGAAGGGCGGACACCACC
ACAGGCGGTGCTACCGCTGCCGGTGGCCGGGACATCACTCAGAGGACTGC
ACAAAGCCGGAGAAGGACTTCCTGGAGAGGTGCGTAAACTGCTCGGGGTA
CGGCCACAACGCGAACAA
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