mRNA_C-linearis_contig78.15340.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig78.15340.1
Unique NamemRNA_C-linearis_contig78.15340.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:147015..148043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size530
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15340.1prot_C-linearis_contig78.15340.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig78 147037..147823 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.3466437-UTR-C-linearis_contig78:147014..1470361622930477.3466437-UTR-C-linearis_contig78:147014..147036Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 147015..147036 -
1690881089.7716014-UTR-C-linearis_contig78:147014..1470361690881089.7716014-UTR-C-linearis_contig78:147014..147036Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 147015..147036 -
1622930477.4013772-UTR-C-linearis_contig78:147823..1480431622930477.4013772-UTR-C-linearis_contig78:147823..148043Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 147824..148043 -
1690881089.804613-UTR-C-linearis_contig78:147823..1480431690881089.804613-UTR-C-linearis_contig78:147823..148043Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 147824..148043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.36431-CDS-C-linearis_contig78:147036..1473041622930477.36431-CDS-C-linearis_contig78:147036..147304Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 147037..147304 -
1690881089.7824564-CDS-C-linearis_contig78:147036..1473041690881089.7824564-CDS-C-linearis_contig78:147036..147304Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 147037..147304 -
1622930477.3822372-CDS-C-linearis_contig78:147803..1478231622930477.3822372-CDS-C-linearis_contig78:147803..147823Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 147804..147823 -
1690881089.7951186-CDS-C-linearis_contig78:147803..1478231690881089.7951186-CDS-C-linearis_contig78:147803..147823Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 147804..147823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig78.15340.1

>prot_C-linearis_contig78.15340.1 ID=prot_C-linearis_contig78.15340.1|Name=mRNA_C-linearis_contig78.15340.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp
MAHDWNSSDSDHVMSAKRADELLQSLNSAAMAVVNAPQRARRNYAGAKGG
IRSPREALGELAADCAWRKVFGTPDGELPARPPGPRPTKAEEVGC*
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mRNA from alignment at C-linearis_contig78:147015..148043-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig78.15340.1 ID=mRNA_C-linearis_contig78.15340.1|Name=mRNA_C-linearis_contig78.15340.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1029bp|location=Sequence derived from alignment at C-linearis_contig78:147015..148043- (Chordaria linearis ClinC8C monoicous)
GTTGAGCTTGCGGCCTGAGGGAAGGACACTGCCGCCCTAAGCAGCAGCAT
CACAACTGCACCTCTCAGTGCCTCCACCACCAAAGTTTTAGCGCTCGAGG
ACCTGTATCCAGCGAGTAACGAAGCACAAAAATACCTTGTGCGGCGGCGG
CGGCGGCGGCAGCAGCAGCGGTACCACCACCACCACCACCACCACCACCA
GCACACCTGCAGAGCTGGGAATGGCGCACGATTGGAATAGGTGGGCCGCA
TGTTTCACGGGTGTGTCGGATTGTCTAACATAGATGCACTGCGTAGTCTC
GTCTTCCTACCCTTTGTTGTTTTGTGCTTGAAATGAACCGCGCGCTGGAA
ACCGCGCCACCGAATTTAAACATTTAAACCGCGCGATGCCCATACAGAAT
ACAGCAGCAGTGATAACCCCTCTGTCATGTCGGACTCGCCCCGAGCATGC
GACCCTCAGCTGTACTGGGCAGCATGCCTTGTTGTTTTGTGCTTGAAATG
AACTGCGCGCTGCTGATTTCAAACCGCGCCGCCGAATTTAAACATTTAAA
CCGCGCGATGCCCATACAGAATACAGCAGCAGTGATAACCCCTCTGTCAT
GTCGGACTCGCCCCGATCATGCGACCCTCAGCTGTACTGTGCAGCATGCA
CTATTTGAGTTATGACCTGTTGTGTGTCGCCGGTCGTGGATTCCGATGAT
GTTGTGCGTATTTTCGGATTTGGCGCTGCCGACACCTAGCTCGGATTCGG
ATCATGTGATGTCCGCCAAACGGGCCGATGAACTACTTCAGAGCCTCAAC
TCTGCGGCCATGGCGGTGGTGAATGCCCCCCAGCGGGCTCGACGCAACTA
TGCTGGCGCCAAAGGTGGAATCCGAAGTCCCAGGGAGGCCCTGGGGGAAC
TCGCCGCGGACTGCGCTTGGCGGAAGGTGTTCGGCACTCCGGACGGCGAG
CTGCCCGCGCGGCCGCCCGGGCCCCGCCCCACGAAGGCGGAAGAGGTAGG
CTGTTAGATATAGTCTACAACTTATCCAC
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Coding sequence (CDS) from alignment at C-linearis_contig78:147015..148043-

>mRNA_C-linearis_contig78.15340.1 ID=mRNA_C-linearis_contig78.15340.1|Name=mRNA_C-linearis_contig78.15340.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig78:147015..148043- (Chordaria linearis ClinC8C monoicous)
ATGGCGCACGATTGGAATAGATGGCGCACGATTGGAATAGCTCGGATTCG
GATCATGTGATGTCCGCCAAACGGGCCGATGAACTACTTCAGAGCCTCAA
CTCTGCGGCCATGGCGGTGGTGAATGCCCCCCAGCGGGCTCGACGCAACT
ATGCTGGCGCCAAAGGTGGAATCCGAAGTCCCAGGGAGGCCCTGGGGGAA
CTCGCCGCGGACTGCGCTTGGCGGAAGGTGTTCGGCACTCCGGACGGCGA
GCTGCCCGCGCGGCCGCCCGGGCCCCGCCCCACGAAGGCGGAAGAGGTAG
GCTGTTAGCTCGGATTCGGATCATGTGATGTCCGCCAAACGGGCCGATGA
ACTACTTCAGAGCCTCAACTCTGCGGCCATGGCGGTGGTGAATGCCCCCC
AGCGGGCTCGACGCAACTATGCTGGCGCCAAAGGTGGAATCCGAAGTCCC
AGGGAGGCCCTGGGGGAACTCGCCGCGGACTGCGCTTGGCGGAAGGTGTT
CGGCACTCCGGACGGCGAGCTGCCCGCGCGGCCGCCCGGGCCCCGCCCCA
CGAAGGCGGAAGAGGTAGGCTGTTAG
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