mRNA_C-linearis_contig77.15334.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig77.15334.1
Unique NamemRNA_C-linearis_contig77.15334.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig77.15334.1 vs. uniprot
Match: A0A6H5KVF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.920e-19
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 QIPMRDPNTQIDIPDHVTWQMNLAIDSNTGDSAFGADGSVIPAAKGILGETSVPTVDEDGEPIMDGMESIRGTTEQYHVEGPLSVEFDMD 270
            QI MRDP  + D+PDH+TWQMN+AI              V  AAKGILG+T VPT D DG+PIM G+E+IRG+ E Y V+G L V+F  D
Sbjct:  531 QIAMRDPTDRFDLPDHLTWQMNMAIHHE----------DVSHAAKGILGQTFVPTRDADGKPIMTGLEAIRGSEEDYRVDGALGVDFVQD 610
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BLAST of mRNA_C-linearis_contig77.15334.1 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 8.470e-17
Identity = 47/85 (55.29%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:    1 QIPMRDPNTQIDIPDHVTWQMNLAIDSNTGDSAFGADGSVIPAAKGILGETSVPTVDEDGEPIMDGMESIRGTTEQYHVEGPLSV 255
            QI MRDP  Q D+PDH+TWQMNLA+D N           V  AAKGILGET VPT D  G+PIM GME+IRGT E     G + +
Sbjct:  234 QIAMRDPTDQYDLPDHLTWQMNLAVDHN----------QVSYAAKGILGETFVPTRDASGKPIMTGMEAIRGTEEDCKCGGNVMM 308
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BLAST of mRNA_C-linearis_contig77.15334.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.580e-16
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:   28 QIDIPDHVTWQMNLAIDSNTGDSAFGADGSVIPAAKGILGETSVPTVDEDGEPIMDGMESIRGTTEQYHVEGPLSVEFDM 267
            Q  +PDH+TWQMNLA+D N           V   AKG+LGET VPT    GE IM GME+IRGT E YHVEGPL ++F +
Sbjct: 1000 QFGLPDHMTWQMNLAVDHN----------DVSLNAKGVLGETMVPTRTVSGEYIMHGMEAIRGTQEDYHVEGPLGLDFTL 1069
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BLAST of mRNA_C-linearis_contig77.15334.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.300e-16
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:   28 QIDIPDHVTWQMNLAIDSNTGDSAFGADGSVIPAAKGILGETSVPTVDEDGEPIMDGMESIRGTTEQYHVEGPLSVEFDM 267
            ++ +PDHVTWQMNLA+D N           V  +AKG+LGET +PT    GE +M GME+IRGT E YHV+GPL + F++
Sbjct:  818 ELGLPDHVTWQMNLAVDHN----------DVSLSAKGVLGETLIPTRAASGEYVMHGMEAIRGTEEDYHVDGPLGLGFNL 887
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BLAST of mRNA_C-linearis_contig77.15334.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.470e-15
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 QIPMRDPNTQIDIPDHVTWQMNLAIDSNTGDSAFGADGSVIPAAKGILGETSVPTVDEDGEPIMDGMESIRGTTEQYHVEGPLSVEF 261
            Q+ MRDP  + DIPDH+TWQMNLA D+         D +V   A GILGET   T+D +G PIM+GM +IRG+ E Y V+GPL   F
Sbjct:  357 QLAMRDPTDRFDIPDHLTWQMNLAFDN--------VDLAV--DATGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLVDGPLDNVF 433
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BLAST of mRNA_C-linearis_contig77.15334.1 vs. uniprot
Match: D7FUC7_ECTSI (Imm upregulated 13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC7_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-11
Identity = 37/70 (52.86%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   61 MNLAIDSNTGDSAFGADGSVIPAAKGILGETSVPTVDEDGEPIMDGMESIRGTTEQYHVEGPLSVEFDMD 270
            MN+ ID N           V  +A GILGETS PT D +GE IM GME+IRG+ E Y V GPL V F MD
Sbjct:    1 MNMGIDHN----------EVSYSATGILGETSTPTKDANGEDIMTGMEAIRGSEEDYRVTGPLDVTFAMD 60
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BLAST of mRNA_C-linearis_contig77.15334.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.290e-11
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   28 QIDIPDHVTWQMNLAIDSNTGDSAFGADGSVIPAAKGILGETSVPTVDEDGEPIMDGMESIRGTTEQYHV 237
            Q  +PDH TWQMNLAIDS+          SV   A+G+LGET VPT D DGE +M GMESIRGT E+  +
Sbjct:  277 QYGLPDHSTWQMNLAIDSD----------SVGVGAQGVLGETLVPTRDADGEYVMHGMESIRGTQEECEL 336
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig77.15334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KVF3_9PHAE4.920e-1953.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Y7_9PHAE8.470e-1755.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE2.580e-1655.00LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE6.300e-1651.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7V7_9PHAE7.470e-1551.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC7_ECTSI1.750e-1152.86Imm upregulated 13 n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KRS2_9PHAE5.290e-1155.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig77contigC-linearis_contig77:865970..866810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size582
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig77.15334.1prot_C-linearis_contig77.15334.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig77 865979..866510 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930476.9606407-UTR-C-linearis_contig77:865969..8659781622930476.9606407-UTR-C-linearis_contig77:865969..865978Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 865970..865978 +
1690881089.5900733-UTR-C-linearis_contig77:865969..8659781690881089.5900733-UTR-C-linearis_contig77:865969..865978Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 865970..865978 +
1622930476.9993553-UTR-C-linearis_contig77:866510..8668101622930476.9993553-UTR-C-linearis_contig77:866510..866810Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 866511..866810 +
1690881089.6197975-UTR-C-linearis_contig77:866510..8668101690881089.6197975-UTR-C-linearis_contig77:866510..866810Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 866511..866810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930476.9723268-CDS-C-linearis_contig77:865978..8661981622930476.9723268-CDS-C-linearis_contig77:865978..866198Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 865979..866198 +
1690881089.602865-CDS-C-linearis_contig77:865978..8661981690881089.602865-CDS-C-linearis_contig77:865978..866198Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 865979..866198 +
1622930476.9868262-CDS-C-linearis_contig77:866457..8665101622930476.9868262-CDS-C-linearis_contig77:866457..866510Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 866458..866510 +
1690881089.611322-CDS-C-linearis_contig77:866457..8665101690881089.611322-CDS-C-linearis_contig77:866457..866510Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 866458..866510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig77.15334.1

>prot_C-linearis_contig77.15334.1 ID=prot_C-linearis_contig77.15334.1|Name=mRNA_C-linearis_contig77.15334.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=91bp
MRDPNTQIDIPDHVTWQMNLAIDSNTGDSAFGADGSVIPAAKGILGETSV
PTVDEDGEPIMDGMESIRGTTEQYHVEGPLSVEFDMDHEW*
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mRNA from alignment at C-linearis_contig77:865970..866810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig77.15334.1 ID=mRNA_C-linearis_contig77.15334.1|Name=mRNA_C-linearis_contig77.15334.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=841bp|location=Sequence derived from alignment at C-linearis_contig77:865970..866810+ (Chordaria linearis ClinC8C monoicous)
CAGATCCCCATGAGGGACCCCAACACCCAGATCGATATCCCCGATCACGT
GACTTGGCAGATGAACCTCGCGATCGACAGCAACACCGGCGACTCTGCTT
TCGGCGCCGACGGCTCCGTTATTCCCGCCGCCAAGGGCATCCTCGGCGAG
ACCTCGGTTCCGACGGTCGACGAGGACGGCGAGCCCATCATGGACGGCAT
GGAATCTATCCGTGGCACGACCGAGCAATGTGAGTCGGCGAGCACAGCAT
GGTTTTGGGGGGGGAAACGTTACAGATTGTCAACAGCACCCCTCACCTCT
CTCTTTGGGGGTCATTCCGTTACCCTTGGGGTCAGAAATGTTTGTGAGGC
GTCATCTTCCAGGTTTCCACGACGCAAGAAGGTTCGACACAATCGGCGTC
ATCATCCCCACGCTCTCTGCTTACTGATTTTTCAAACCTCTGCGCCGTCC
CTTGTCCCACCTTACCCGACCTGCTGCCATTTGTGCAGACCACGTGGAGG
GCCCCCTGTCGGTCGAGTTCGACATGGACCACGAGTGGTGAAAAGGAACT
GCAGTGCCAGAGGTGCCCCCCAAGTGCCTACCTCCATCCGGTGGTAGTGG
CGTGGCCCACGCGTTGCAAGACTTCCCACACCACCGAAGACCCGAACAGA
GGGCAAACGTTTTGCCGACGGAGGCTGTAAAAGTTTCATATCGTACCACG
ATCGGACAGCATTTGCTCGCTGCTTCTATGATCGTCACCAACCAGTGCTC
CCTAGGGGATCTTTTTTTGTTTCGGGCTGATTTTAGCCTCGGCCCGTGTA
TGAGATCAAGTCCTACGCAGAGTGGGGTTTTGGAAAGGACC
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Coding sequence (CDS) from alignment at C-linearis_contig77:865970..866810+

>mRNA_C-linearis_contig77.15334.1 ID=mRNA_C-linearis_contig77.15334.1|Name=mRNA_C-linearis_contig77.15334.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at C-linearis_contig77:865970..866810+ (Chordaria linearis ClinC8C monoicous)
ATGAGGGACCCCAACACCCAGATCGATATCCCCGATCACGTGACTTGGCA
GATGAACCTCGCGATCGACAGCAACACCGGCGACTCTGCTTTCGGCGCCG
ACGGCTCCGTTATTCCCGCCGCCAAGGGCATCCTCGGCGAGACCTCGGTT
CCGACGGTCGACGAGGACGGCGAGCCCATCATGGACGGCATGGAATCTAT
CCGTGGCACGACCGAGCAATATGAGGGACCCCAACACCCAGATCGATATC
CCCGATCACGTGACTTGGCAGATGAACCTCGCGATCGACAGCAACACCGG
CGACTCTGCTTTCGGCGCCGACGGCTCCGTTATTCCCGCCGCCAAGGGCA
TCCTCGGCGAGACCTCGGTTCCGACGGTCGACGAGGACGGCGAGCCCATC
ATGGACGGCATGGAATCTATCCGTGGCACGACCGAGCAATACCACGTGGA
GGGCCCCCTGTCGGTCGAGTTCGACATGGACCACGAGTGGTGAACCACGT
GGAGGGCCCCCTGTCGGTCGAGTTCGACATGGACCACGAGTGGTGA
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