mRNA_C-linearis_contig77.15328.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig77.15328.1
Unique NamemRNA_C-linearis_contig77.15328.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig77.15328.1 vs. uniprot
Match: D7G2K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K4_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.080e-47
Identity = 118/138 (85.51%), Postives = 125/138 (90.58%), Query Frame = 2 
Query:  182 MVELQGELVSKDPMSGQPLGSMTFENEKPMLVIANHKLEGKPASEPKPLLVLRKVLVDVNDENSXXXXXXXXXXXXXXXXXXXXXXXXXXXX--QRVEYRIIGRVMRKTIFKTRPKPLIRKLGDGGGHGGGSTARSCM 589
            MVELQGEL+SKDP+SGQPLGSMT EN K MLVI+NHKLEGK ASEPKPLLVLRKV+VDVNDEN  XXXXXXXXXXXXXXXXXXXXXXXXXX   QRVEYR++GRV RKTIFKTRPKPLI+KLG GGG  GGSTARSCM
Sbjct:    1 MVELQGELISKDPLSGQPLGSMTSENGKAMLVISNHKLEGKAASEPKPLLVLRKVVVDVNDENCGXXXXXXXXXXXXXXXXXXXXXXXXXXPPAQRVEYRVVGRVARKTIFKTRPKPLIKKLGSGGGRAGGSTARSCM 138
[Close]
BLAST of mRNA_C-linearis_contig77.15328.1 vs. uniprot
Match: A0A6G0WU93_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU93_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.460e-8
Identity = 38/119 (31.93%), Postives = 54/119 (45.38%), Query Frame = 2 
Query:  173 EWSMVELQGELVSKDPMSGQPLGSMTFENEKPMLVIANHKLEGKPASEPKPLLVLRKVLVDVNDENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVEYRIIGRVMRKTIFKTRPKPL 529
            EWS+VELQGEL+ +   S  PLG + ++   P L+I  H LEGK     KP+ ++RK  +D N                                Q   Y ++G   +K +F TRPKP+
Sbjct:   15 EWSIVELQGELICESKAS-LPLGKLQYQKGVPTLLIGTHLLEGKVVKLGKPMAIMRKKAIDDNSTE-----------------------------QTKAYTVVGIARKKLVFSTRPKPV 103
[Close]
BLAST of mRNA_C-linearis_contig77.15328.1 vs. uniprot
Match: A0A3B5B051_9TELE (Chromosome transmission fidelity factor 8 n=3 Tax=Ovalentaria TaxID=1489908 RepID=A0A3B5B051_9TELE)

HSP 1 Score: 61.6 bits (148), Expect = 5.750e-8
Identity = 44/127 (34.65%), Postives = 59/127 (46.46%), Query Frame = 2 
Query:  170 PEWSMVELQGELVSK--DPMSGQPLGSMTFENEK-PMLVIANHKLEGKPASEPKPLLVLRKV---LVDVNDENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVEYRIIGRVMRKTIFKTRPKPLI 532
            PEW MVELQGE+VS+    ++G  +G + + NE  P+L+I +H L GK     KP  VL K      D+NDE+                                 Y +   + RK IFKTRPKP+I
Sbjct:   16 PEWLMVELQGEMVSRHNSGLAGNVMGDLLYTNEGVPVLIIGHHILYGKQVKLEKPFAVLTKHPGHSQDINDEDVAMETDQQGPAS-------------------TSYSVSALIKRKLIFKTRPKPII 123
[Close]
BLAST of mRNA_C-linearis_contig77.15328.1 vs. uniprot
Match: A0A1S4EL75_DIACI (chromosome transmission fidelity protein 8 homolog n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A1S4EL75_DIACI)

HSP 1 Score: 61.2 bits (147), Expect = 6.970e-8
Identity = 41/125 (32.80%), Postives = 61/125 (48.80%), Query Frame = 2 
Query:  167 VPEWSMVELQGELVSKDP--MSGQPLGSMTFE-NEKPMLVIANHKLEGKPASEPKPLLVLRKVLVDVNDENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVEYRIIGRVMRKTIFKTRPKPLI 532
            +PEW +VELQG L S+    M  + +G +  + N  P+L+I +H + GK  +  KPL V++KVL + N + S                              VEY I+  + RK IFK RPKP++
Sbjct:    1 MPEWGLVELQGNLESRSNTRMENKFVGDLHIQKNGTPVLIIGHHVIHGKVQTLDKPLAVMQKVLSNPNVDPSTIASSSKADLNLNRSQSSS-----------VEYEILAVIRRKMIFKARPKPIV 114
[Close]
BLAST of mRNA_C-linearis_contig77.15328.1 vs. uniprot
Match: A0A067CDZ8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CDZ8_SAPPC)

HSP 1 Score: 58.5 bits (140), Expect = 3.170e-7
Identity = 39/121 (32.23%), Postives = 56/121 (46.28%), Query Frame = 2 
Query:  170 PEWSMVELQGELVSKDPMSGQPLGSMTFENEKPMLVIANHKLEGKPASEPKPLLVLRKVLVDVNDENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVEYRIIGRVMRKTIFKTRPKPLI 532
            PEWS++ELQGEL+S+   S   LG + ++   P L+I NH LEGK A   KP+ ++RK      D  +                                Y ++G   +K IF TRPKP++
Sbjct:   15 PEWSIIELQGELISETKAS-LGLGHLEYKKGVPTLLIGNHLLEGKAAKLAKPMAIMRK------DGGAA-------------------------------YTVVGIARKKLIFNTRPKPVL 97
[Close]
BLAST of mRNA_C-linearis_contig77.15328.1 vs. uniprot
Match: UPI001886F2FE (chromosome transmission fidelity protein 8 homolog n=1 Tax=Pungitius pungitius TaxID=134920 RepID=UPI001886F2FE)

HSP 1 Score: 59.3 bits (142), Expect = 1.170e-6
Identity = 40/124 (32.26%), Postives = 56/124 (45.16%), Query Frame = 2 
Query:  170 PEWSMVELQGELVSKDP--MSGQPLGSMTFENE-KPMLVIANHKLEGKPASEPKPLLVLRKVLVDVNDENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVEYRIIGRVMRKTIFKTRPKPLI 532
            PEW MVELQGE+VS+    ++G  +G + + NE  P+L++ +H L GK     KPL +L K    + D                                   Y +   + RK IFKTRPKP+I
Sbjct:   63 PEWLMVELQGEMVSRHDSGLAGNVMGDLLYTNEGTPVLIVGHHILYGKQLKLEKPLAILTKHSSHLQDSLGSHDNGNSSRDVTHVAMETNQQGPTS-----TSYTVSALIKRKLIFKTRPKPII 181
[Close]
BLAST of mRNA_C-linearis_contig77.15328.1 vs. uniprot
Match: A0A4U5UG96_COLLU (Chromosome transmission fidelity protein 8-like protein n=10 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4U5UG96_COLLU)

HSP 1 Score: 57.4 bits (137), Expect = 2.020e-6
Identity = 39/124 (31.45%), Postives = 55/124 (44.35%), Query Frame = 2 
Query:  170 PEWSMVELQGELVSK--DPMSGQPLGSMTFENEK-PMLVIANHKLEGKPASEPKPLLVLRKVLVDVNDENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVEYRIIGRVMRKTIFKTRPKPLI 532
            PEW +VELQGE+VS+    ++G  +G + +  E  P+L++ +H L GK     KP  VL K  V   D  +                                Y +   + RK IFKTRPKP+I
Sbjct:   16 PEWLLVELQGEVVSRHNSGLAGNVMGDLLYTKEGVPVLIVGHHILYGKQVKLEKPFAVLTKHAVHSQDSGNSNDDVTQVPMETNQQGATSTS---------TSYSVSALIKRKLIFKTRPKPII 130
[Close]
BLAST of mRNA_C-linearis_contig77.15328.1 vs. uniprot
Match: A0A1V9YDE7_9STRA (Chromosome transmission fidelity protein 8-like isoform X2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDE7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.260e-6
Identity = 39/120 (32.50%), Postives = 54/120 (45.00%), Query Frame = 2 
Query:  173 EWSMVELQGELVSKDPMSGQPLGSMTFENEKPMLVIANHKLEGKPASEPKPLLVLRKVLVDVNDENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVEYRIIGRVMRKTIFKTRPKPLI 532
            EWS+VELQGEL+S+   S   LG + ++   P L+I NH LEGK     KP+ ++RK       E S                                Y ++G   +K IF TRPKP++
Sbjct:   16 EWSIVELQGELISETKAS-LDLGQLEYKKGVPTLLIGNHLLEGKITKLVKPMAIMRK-------EGSKDDGPG------------------------TAYTVVGIARKKLIFNTRPKPVL 103
[Close]
BLAST of mRNA_C-linearis_contig77.15328.1 vs. uniprot
Match: UPI0009019874 (chromosome transmission fidelity protein 8 homolog n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI0009019874)

HSP 1 Score: 56.6 bits (135), Expect = 3.920e-6
Identity = 44/124 (35.48%), Postives = 60/124 (48.39%), Query Frame = 2 
Query:  170 PEWSMVELQGELVSK--DPMSGQPLGSMTFENEK-PMLVIANHKLEGKPASEPKPLLVLRKVLVDVNDENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVEYRIIGRVMRKTIFKTRPKPLI 532
            PEW +VELQGE+VS+    ++G  +G + +  E  P+L++ +H L GK     KP  VL K  V   D  +                    XXXXX       Y +   + RK IFKTRPKP+I
Sbjct:   16 PEWLLVELQGEVVSRHNSGLAGNVMGDLLYTKEGVPVLIVGHHILYGKQVKLEKPFAVLTKHAVHSQDSGNSNDDVTQVPMETDQQGATSTXXXXX-------YSVSALIKRKLIFKTRPKPII 132
[Close]
BLAST of mRNA_C-linearis_contig77.15328.1 vs. uniprot
Match: C3KHU9_ANOFI (Chromosome transmission fidelity protein 8 n=1 Tax=Anoplopoma fimbria TaxID=229290 RepID=C3KHU9_ANOFI)

HSP 1 Score: 56.6 bits (135), Expect = 4.090e-6
Identity = 39/124 (31.45%), Postives = 55/124 (44.35%), Query Frame = 2 
Query:  170 PEWSMVELQGELVSK--DPMSGQPLGSMTFENE-KPMLVIANHKLEGKPASEPKPLLVLRKVLVDVNDENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRVEYRIIGRVMRKTIFKTRPKPLI 532
            PEW +VELQGE+VS+    ++G  +G + +  E  P+L++ +H L GK     KPL VL K    + D                                   Y +   + RK IFKTRPKP+I
Sbjct:   16 PEWLLVELQGEMVSRHNSGLAGNIVGDLLYTKEGTPVLIVGHHILYGKQLKLEKPLAVLTKHSSHLQDSQGSHGNNNSSEDVTQVPMETNQRGPAS-----TSYTVSALIKRKLIFKTRPKPII 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig77.15328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K4_ECTSI1.080e-4785.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0WU93_9STRA3.460e-831.93Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A3B5B051_9TELE5.750e-834.65Chromosome transmission fidelity factor 8 n=3 Tax=... [more]
A0A1S4EL75_DIACI6.970e-832.80chromosome transmission fidelity protein 8 homolog... [more]
A0A067CDZ8_SAPPC3.170e-732.23Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
UPI001886F2FE1.170e-632.26chromosome transmission fidelity protein 8 homolog... [more]
A0A4U5UG96_COLLU2.020e-631.45Chromosome transmission fidelity protein 8-like pr... [more]
A0A1V9YDE7_9STRA3.260e-632.50Chromosome transmission fidelity protein 8-like is... [more]
UPI00090198743.920e-635.48chromosome transmission fidelity protein 8 homolog... [more]
C3KHU9_ANOFI4.090e-631.45Chromosome transmission fidelity protein 8 n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig77contigC-linearis_contig77:673425..676064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score64.3
Seed ortholog evalue6.5e-08
Seed eggNOG ortholog144197.XP_008302692.1
Preferred nameCHTF8
KEGG koko:K11270
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006275,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031390,GO:0031974,GO:0031981,GO:0032991,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045935,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071840,GO:0080090,GO:0090329,GO:0098813,GO:0140014,GO:1900262,GO:1900264,GO:1903047,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)
EggNOG OGs2BWJ1@1,2S2DB@2759,3A8WC@33154,3BU82@33208,3D8NQ@33213,48FF6@7711,49CAU@7742,4A45X@7898
Ec32 ortholog descriptionChromosome transmission fidelity protein 8
Ec32 orthologEc-11_002560.1
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size1354
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig77.15328.1prot_C-linearis_contig77.15328.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig77 674187..676000 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.1607969-UTR-C-linearis_contig77:673424..6741861622930475.1607969-UTR-C-linearis_contig77:673424..674186Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 673425..674186 -
1690881088.8323312-UTR-C-linearis_contig77:673424..6741861690881088.8323312-UTR-C-linearis_contig77:673424..674186Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 673425..674186 -
1622930475.2175612-UTR-C-linearis_contig77:676000..6760641622930475.2175612-UTR-C-linearis_contig77:676000..676064Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 676001..676064 -
1690881088.867303-UTR-C-linearis_contig77:676000..6760641690881088.867303-UTR-C-linearis_contig77:676000..676064Chordaria linearis ClinC8C monoicousUTRC-linearis_contig77 676001..676064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.173849-CDS-C-linearis_contig77:674186..6745191622930475.173849-CDS-C-linearis_contig77:674186..674519Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 674187..674519 -
1690881088.84771-CDS-C-linearis_contig77:674186..6745191690881088.84771-CDS-C-linearis_contig77:674186..674519Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 674187..674519 -
1622930475.1989717-CDS-C-linearis_contig77:675805..6760001622930475.1989717-CDS-C-linearis_contig77:675805..676000Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 675806..676000 -
1690881088.8572822-CDS-C-linearis_contig77:675805..6760001690881088.8572822-CDS-C-linearis_contig77:675805..676000Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 675806..676000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig77.15328.1

>prot_C-linearis_contig77.15328.1 ID=prot_C-linearis_contig77.15328.1|Name=mRNA_C-linearis_contig77.15328.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=176bp
MIIPVSIDKAAQAEAQGAGGAGGKDGQTKPKRVCVPEWSMVELQGELVSK
DPMSGQPLGSMTFENEKPMLVIANHKLEGKPASEPKPLLVLRKVLVDVND
ENSSGGQHDGGSGGGGGGKGGGDDAARRPQQQRVEYRIIGRVMRKTIFKT
RPKPLIRKLGDGGGHGGGSTARSCM*
back to top

mRNA from alignment at C-linearis_contig77:673425..676064-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig77.15328.1 ID=mRNA_C-linearis_contig77.15328.1|Name=mRNA_C-linearis_contig77.15328.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2640bp|location=Sequence derived from alignment at C-linearis_contig77:673425..676064- (Chordaria linearis ClinC8C monoicous)
CACAAGCGCAAGCAGCAAGTGCGAGGGAGATCAGCGCGGGTGGATCCATA
GGAAGCAACAGAAGATGATCATACCCGTGAGCATCGACAAGGCGGCACAG
GCAGAAGCTCAAGGAGCAGGAGGAGCTGGTGGCAAGGATGGACAAACGAA
ACCAAAAAGGGTGTGCGTGCCGGAGTGGTCGATGGTAGAGCTGCAGGGGG
AGCTGGTCAGCAAGGACCCCATGTCCGGACAGCCTCTGGGGAGCATGACC
TTCGAAAACGTGAGTCGTGCTGCCTGTGTGTCTCGAGGTGTATCTATCCT
GATGGTTCAGTTCAGTCTGTCCTCGTGTCGTTGTTTAGAGGTGTTTTCGT
TGAGGCAGTTTTGAATTTTCGCACAGGGTTCTGCAGGTTTGAAATTCAAA
CGCGGGAGGAAAAACAGAGGTAATAGACAATTCGTGTGTGGTGATGTCAG
GCCCAAGTCGGGCCGAAGAGAGTTAAGGCAGTCGACCTAGACCGGTCGCT
GAGTCGTGTATATAAAGATTGTGAGATCACACGCAGGTCGCGCGTGCATC
CTCTCTGGAAACTCAACCCGGGGGCCACACATTCAATGGTACCCCAAAAC
CCAATGCCAATCCCAACACATATCCCCCTAAGTATCCCGCAATATCCCGC
CATGTCTCAGTACATCTCTCATCCCTGTCATCAAGACAAGTGATATCACG
AGTATGTCTTTCAAGAGGGGTGGAGGTGGCATAGGAGATAAAGCCGAAGG
AGGTTGTTACGAAGTACTTCTCACGACCACCAGCACAGCATCATTGTTGT
CGTTGCTGCTGCTGCTGCTGCTGTTGTTGTCGTTGCATTCTGTCCCATGA
TACTGCTGTGTGAGAGTTTGCTTCCCCGAACACCAGCTCTCCCACGCTCC
TCACTGCGCGGTGTAACTTGCTGTAGGTGACTCACCAGGCCGTTTGAAAT
CTCGCGCGCTCGAGAGATCATGACGATGATTTCAGTCGATGATCAAGGCT
AAGGCTCACGCCCCAATGCGAGTCAGGGATTTTGTCAAATGCCGGCGACC
CATAAAATCAATGAAATCAACCGTAGGGGGTGCTGAAGATGCAGATGGCA
GTGCGTCGATAACAGGTTCATTGACAAGCGCCGACACATGCTTCGTACAC
TTGTTTGGTAGCTCATCCTGCGGTTCAAAGTCCTCCGTCCATCATGCCGA
CCTTTTCCTTCCGATTCCGGGTGTACCGTAGGTCGCGTCAGATCCCGCAC
TCCCCTGCACAAAACAATTTCGAGCCGATTTGGCGTGGTTTCCGAAAACT
ACTGTGTGTTTATGTTTTTTCCCTCGCTGTCGTGCGGGAGCGGAGTCAAG
TGGCGTATTTTGTATGATATGTTTCTTCCAACGTCACGCCCTAGCTTTGC
CTGTGTACTGCTGGCGCCCACGCCAGTTAAAATCTTGTGTGGCGTCCCAA
ACTTCCCCCCCTCACATCCCACACCTCACCGAAAGATCCCCCGCATTCGT
TTGTTTGTTTGTTTGTTTGTTTGTTTGTTCTTTTTTTTTGCACAGGAGAA
ACCGATGCTGGTGATCGCTAACCACAAGCTGGAGGGGAAGCCAGCCTCGG
AGCCCAAGCCCCTGCTGGTTTTGAGGAAGGTTCTCGTCGACGTTAACGAC
GAGAATAGCAGCGGCGGCCAACACGACGGTGGTAGTGGAGGCGGCGGCGG
CGGCAAGGGAGGGGGTGATGACGCGGCAAGGCGGCCGCAGCAGCAGAGGG
TGGAGTACAGAATAATCGGGAGGGTGATGAGGAAGACGATCTTCAAGACG
AGGCCAAAGCCGCTCATCAGGAAGCTCGGCGACGGCGGCGGTCATGGCGG
CGGCTCCACGGCGCGGTCGTGCATGTAGCTTCAGTTGCTTCAGAAAAAGG
AGGCTGCCGTGGTATCTAGATTGATTCGTGTCTTTTTTTTTGTTTGGATT
GGCTTGTATCCCGTTCGAGTTGAAGGTTGATATTCTGCTTTGTGGTACAC
TGCACTAGATGTATCGGTGGGGATATTCGGGGTTACACGGATGCGTTGGG
AGGTTGCGCGTGTCATGAATATGTGTGTTTGCGGGAGGACCAAAACCCCT
CCACGGGGTCTGTTGGACCCACACGTTAATCAATCAAGGCCCTGGGTCAA
CCTTTTGCTAAAGTTTCTTGTATATTGGCTACCCCAAAGGACCACGCGCG
GGGGGAGATAGGGCATCGCCGATCGGTATGAAAGGGGGTGTGCTCCTAGA
TCTATTCGCTCCCAAGTCGACTTAGTGGAAGCACGTGGTGCGGCGAGCCT
GTTCGTAGTCCTGGCTGTGTCTTGTGTACCGCGGGCTGGTTCGACGCAGC
TTACGCCCCCTGTGCCGTGGGAAAGGGGTTGGCGTGTCCGTGAGGCGTCT
GTGTGGTACATGCACTCTCGTTGAGAGAAAAGTGTACTGCGGTGACTGAC
TGCCCAGCTAGCTGGACCCGCTGCTGACGACAAACCAGTCAGAAGTATTT
GATGGGAGTGTGTGTGTTTTGTTTCGGGGATGGGTTTGAATGGAAGCACG
GCTATGAAACAAATCGGTTATTTTTTGCGCTTTTCCGTGGGACTTCGATG
TGCATACCAGAAAGGCTATTCTCGGTGCAGAAAAAGAAGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig77:673425..676064-

>mRNA_C-linearis_contig77.15328.1 ID=mRNA_C-linearis_contig77.15328.1|Name=mRNA_C-linearis_contig77.15328.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at C-linearis_contig77:673425..676064- (Chordaria linearis ClinC8C monoicous)
ATGATCATACCCGTGAGCATCGACAAGGCGGCACAGGCAGAAGCTCAAGG
AGCAGGAGGAGCTGGTGGCAAGGATGGACAAACGAAACCAAAAAGGGTGT
GCGTGCCGGAGTGGTCGATGGTAGAGCTGCAGGGGGAGCTGGTCAGCAAG
GACCCCATGTCCGGACAGCCTCTGGGGAGCATGACCTTCGAAAACATGAT
CATACCCGTGAGCATCGACAAGGCGGCACAGGCAGAAGCTCAAGGAGCAG
GAGGAGCTGGTGGCAAGGATGGACAAACGAAACCAAAAAGGGTGTGCGTG
CCGGAGTGGTCGATGGTAGAGCTGCAGGGGGAGCTGGTCAGCAAGGACCC
CATGTCCGGACAGCCTCTGGGGAGCATGACCTTCGAAAACGAGAAACCGA
TGCTGGTGATCGCTAACCACAAGCTGGAGGGGAAGCCAGCCTCGGAGCCC
AAGCCCCTGCTGGTTTTGAGGAAGGTTCTCGTCGACGTTAACGACGAGAA
TAGCAGCGGCGGCCAACACGACGGTGGTAGTGGAGGCGGCGGCGGCGGCA
AGGGAGGGGGTGATGACGCGGCAAGGCGGCCGCAGCAGCAGAGGGTGGAG
TACAGAATAATCGGGAGGGTGATGAGGAAGACGATCTTCAAGACGAGGCC
AAAGCCGCTCATCAGGAAGCTCGGCGACGGCGGCGGTCATGGCGGCGGCT
CCACGGCGCGGTCGTGCATGTAGGAGAAACCGATGCTGGTGATCGCTAAC
CACAAGCTGGAGGGGAAGCCAGCCTCGGAGCCCAAGCCCCTGCTGGTTTT
GAGGAAGGTTCTCGTCGACGTTAACGACGAGAATAGCAGCGGCGGCCAAC
ACGACGGTGGTAGTGGAGGCGGCGGCGGCGGCAAGGGAGGGGGTGATGAC
GCGGCAAGGCGGCCGCAGCAGCAGAGGGTGGAGTACAGAATAATCGGGAG
GGTGATGAGGAAGACGATCTTCAAGACGAGGCCAAAGCCGCTCATCAGGA
AGCTCGGCGACGGCGGCGGTCATGGCGGCGGCTCCACGGCGCGGTCGTGC
ATGTAG
back to top