mRNA_C-linearis_contig76.15241.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig76.15241.1 vs. uniprot
Match: D7FQQ9_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ9_ECTSI) HSP 1 Score: 1601 bits (4145), Expect = 0.000e+0 Identity = 858/1288 (66.61%), Postives = 993/1288 (77.10%), Query Frame = 1
Query: 145 RQVLPSADAGHFKLSVTRDSVSFITSCISYGASAVEVAASLDALDPVDDLGGSAVVRQGDGSTPAYNYGFIYSISASNSSQDLVSSLGIELAGSGVESGCARLSTVGYWEDGLNWDTGAAPASTDDVTIPADSGFVVFTADTTVSSLQISGGALVTHDSTCLPGWTPSPGGTSSSFGSKKCYRSSGDAASWAEAQSACASAVSPQHTGLPRSGALRGALVTVQDQDENNWVSRMCRGDLLERDCWVGMTRSHGAGDGVVVGDDLEWAGLGQVVGESRYRSWAVREPSDFQGDQAGENCVAIRSSKRRAADQGETRWYDDECVSEKPFVCQAFGVSKPFLLTVSTELRLAGGYIVGAGTVISSTLAQVTGNDGQVGVLNGATLLNSASGLMEWSAPSAVGWGGALRNMGELAFSGTATALWAAEDEAGFLADNVGPWPTMVNEEGAKVVVGAGAGVALEWLLWNKGGSLVVRGALDLTGGGYSSSGTLTVEAGGEASFSGSSFIMHQSEVVELTLQADREVGGQDVETSAEVGGYYRLAFGGEETSCIGYHATEDVVQASRAREALEQLTSVEEEGGVAVRRDGDGKLKRWQYGYRYVVTFDGARSLSSG-NALALSCAGGANNCGCVDVTGSISGPNA--VGCGTV--GSAEDSGPQSAEFDSSACLVQATVELETLRGGGETVVSGGGTLTFSDGGQYLLPSAVAADMEVVGEAEVVCPQWAAELVGAVNVSSGGVLWFAGADWDALDAVHLLHSDPHTPGRAGGAIASPPSFSATVNGDVSVENNGEIRLAA-TQSAALTVLGSLTLSGGGLSGQGRVEVEGSTLVVASGVSSDGGVGVDEASFLKNGVTLDMYGGGLWSGGGLQARDGVSVVNRGQLSLSADGGTWFGHGGGFGAKEALDFDGDRWYANPLCGDSCTVEPWWDNREGGEVVAAEGSDTLLGFVLYNEGTVRVENGGRLEWRAVGQGGGNGSMVLPGVNSTIAFSDGGFVFGTNAVLTGEGVLEFSGGTGHELPNKETETNQVDVVSLSPLVKVSGHGVVTFAGGRVSFGRGLTVVDKGAIVFSSPTSTTSISGDLXXXXXXXXXXPPPSVHASLAMAGGGGVEAEAPWXXXXXXXXXXXXXGAASRSSLTVEGKFDWGGGAISGNARVICAGESEWSSS-----SEAASTSTKKLLNSLHLVSRGAIVWSTGDVVVSLGAAFVNQGTLLLLEQTDAYAGDGLSLDLAPRIRGPRKGEEAGLRRGFSSAVVEASVDG---TSVVAVGGAGSTGGG--QWAWEELSY 3960
R V+P AD GHFKLS+TRD + TSC+ YGASA VAA+LDALDP+DDLGGS VVR+GDG++P YNYGF+Y I ASNSS++LV+S+ I++ GSGV+ GCARLST+GYWED LNWDTG P+STD+VTIP D+GFVV TADT + +L+++GGALVTHDSTCLPGWTP+PGGTSSSFGSKKCYR A+SWA AQSACASAVS G R G+LRGALVTVQ +ENNWV+RMCRGD LERDCWVGMTRS+ + GDDLEWA L V GESRYRSWA REPSDF+ D+AGE+CVA + S++RAADQGE RWYDDEC +EKPFVCQAFG+S PF L+VSTEL +AGGYIVGAGTV SSTLAQV+G++G+VG+LNGAT+LNS S M+WSA A GWGG+L N G L FSGT L AAED GFLADN G WP +VNEEG +VV AG+ V LEWLLWN+GGS+VV G LD TGGGYSSSGT TVE GGEA FS SS IMHQSEVV +TLQADREV GQDVET A GYYRLAFGGEETSCIGYHA+E+ V+ EALE+++S++EEGGV VRRDGDGKL+RWQYGYRYVVTFDG R+LS G N LALSCAG A++CGCVD++G I G VGCG S++D SAEFDSS C VQ TVELETL+ GGETVVSGGG L F++GGQY LPSAV AD+EV+ AEVVCP AAELVGAVNVSSGGVLWFAGA W+ALDAV LLHSDP TPGR+G A+ASPP F+AT++GDV+V+ + E+RLAA T +A + VLGSLTL+GGGLSG+GR+ VEGSTLVVAS + D+AS L+NG+TLDMYGGG WSGGGL+ARDGV+VVNRG L SA GG WFG GG FGA+ LDFDG++WY NPLCGD CTVEP +NR+GGE++ EGS+ +LGFVL+NEGTVRVE+ GRLEW GQGGGNG++ LPG+NST+ FS GGFVFG ++ + GEGVLEFS GTGHELP E +SPLVKVSGHGVVTFAG + GRG+TV DKG +VFSS TS+T ISG+ P PSV ASL AGGG V+AEAPW GAASRSS+TVEG F W GGAISGNARV+CAG SEW+ S A +TK +LNSLHLVSRG +VWST NQGTLLLLE+T+ GD DL RIR +KGE G R GFSS +EA +DG VA GGAGS GGG WAWEELSY
Sbjct: 22 RYVIP-ADEGHFKLSITRDGAGYNTSCLFYGASATAVAAALDALDPIDDLGGSTVVREGDGASPEYNYGFVYHIVASNSSENLVNSVDIDVVGSGVQHGCARLSTLGYWEDELNWDTGVVPSSTDEVTIPTDAGFVVLTADTAIDTLRVNGGALVTHDSTCLPGWTPAPGGTSSSFGSKKCYRFFDHASSWAAAQSACASAVSQLQPGPARGGSLRGALVTVQGLEENNWVARMCRGDSLERDCWVGMTRSYRGAGRIETGDDLEWAELENVAGESRYRSWATREPSDFENDEAGEHCVATQGSRKRAADQGEARWYDDECEAEKPFVCQAFGISTPFSLSVSTELEMAGGYIVGAGTVTSSTLAQVSGDNGEVGILNGATVLNSGS--MDWSAAEACGWGGSLHNTGTLTFSGT-ILLEAAEDGEGFLADNAGAWPAVVNEEGGEVVFEAGSEVDLEWLLWNEGGSVVVEGELDSTGGGYSSSGTWTVEVGGEARFSDSSLIMHQSEVVVVTLQADREVTGQDVETFAGRAGYYRLAFGGEETSCIGYHASEETVE-----EALEEMSSIDEEGGVTVRRDGDGKLERWQYGYRYVVTFDGTRALSGGSNTLALSCAGSADDCGCVDISGGIEGTGGSRVGCGAAIFDSSDDRASTSAEFDSSTCRVQGTVELETLKEGGETVVSGGGVLAFANGGQYFLPSAVTADVEVMSGAEVVCPHSAAELVGAVNVSSGGVLWFAGAGWEALDAVSLLHSDPDTPGRSGSAVASPPGFNATIDGDVNVQGDAEVRLAAATPAATVVVLGSLTLAGGGLSGRGRISVEGSTLVVASAGDEE-----DDASSLRNGLTLDMYGGGEWSGGGLKARDGVTVVNRGLLEASAAGGIWFGKGGDFGARAPLDFDGEQWYENPLCGDGCTVEPSCENRDGGEILGVEGSNVVLGFVLHNEGTVRVEDHGRLEWCGEGQGGGNGTVDLPGMNSTLVFSAGGFVFGGSSSVAGEGVLEFSAGTGHELPKGGQE--------VSPLVKVSGHGVVTFAGTYLLLGRGVTVADKGVLVFSSVTSSTLISGEATLMDDGLIIFPLPSVLASLVDAGGGSVDAEAPWGSGEGDQDGGAGWGAASRSSVTVEGTFVWMGGAISGNARVVCAGGSEWTDGNGGGGSSAFQATTKHILNSLHLVSRGDVVWSTXXXXXXXXXXXXNQGTLLLLEETEDDDGD----DLPSRIRASQKGERPGWRDGFSSGTLEAMLDGGGSADAVATGGAGSAGGGAANWAWEELSY 1283
BLAST of mRNA_C-linearis_contig76.15241.1 vs. uniprot
Match: A0A6H5JX22_9PHAE (C-type lectin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX22_9PHAE) HSP 1 Score: 767 bits (1981), Expect = 5.220e-262 Identity = 419/623 (67.26%), Postives = 479/623 (76.89%), Query Frame = 1
Query: 502 APASTDDVTIPADSGFVVFTADTTVSSLQISGGALVTHDSTCLPGWTPSPGGTSSSFGSKKCYRSSGDAASWAEAQSACASAVSPQHTGLPRSGALRGALVTVQDQDENNWVSRMCRGDLLERDCWVGMTRSHGAGDGVVVGDDLEWAGLGQVVGESRYRSWAVREPSDFQGDQAGENCVAIRSSKRRAADQGETRWYDDECVSEKPFVCQAFGVSKPFLLTVSTELRLAGGYIVGAGTVISSTLAQVTGNDGQVGVLNGATLLNSASGLMEWSAPSAVGWGGALRNMGELAFSGTATALWAAEDEAGFLADNVGPWPTMVNEEGAKVVVGAGAGVALEWLLWNKGGSLVVRGALDLTGGGYSSSGTLTVEAGGEASFSGSSFIMHQSEVVELTLQADREVGGQDVETSAEVGGYYRLAFGGEETSCIGYHATEDVVQASRAREALEQLTSVEEEGGVAVRRDGDGKLKRWQYGYRYVVTFDGARSLSSG-NALALSCAGGANNCGCVDVTGSISGPNA--VGCGTV--GSAEDSGPQSAEFDSSACLVQATVELETLRGGGETVVSGGGTLTFSDGGQYLLPSAVAADMEVVGEAEVVCPQWAAELVGAVNVSSGGVLWFAG 2355
AP + VTIP D+GFVV TADT + +L+I+GGALVTHDSTCLPGWTP+PGGTSSSFGSKKCYR A+SW AQSACA AVS GL R GALRGALVTVQ ENNWV+RMCRGD ERDCWVGMTRS+ + GDDLEWA L V GE RYRSWA REPSDF+ D+AGENCVAI+ S++RAADQGE RWYDD C +EKPFVCQAFG+S PF L+VSTEL +AGGYIVGAGTV SSTLA+V+G++G+VG+LNGATLLNS S M+WSA A GWGG+L N G L FSG A L AAED GFL+DN G WP +VN+EGA+VV AG+ V LEWLLWN+GGS++V G LD TGGGYSSSGT TVE GGEA FS SS IMHQSEVV +TLQADRE G V TS + S I HAT +EALE+++S++EEGGV VRRDG+GKLKRWQYGYRYVVTFDG R+LS G N LALSCAG A++CGCVD++G+I G + VGCG S++D SAEFDSS C VQ TVELETL+ GGETV+SGGG L F++GGQY LPSAV AD+EV+ AEVVCP AAELVGAVNVSSGGVLWFAG
Sbjct: 10 APNHSRQVTIPTDAGFVVLTADTAIDTLRINGGALVTHDSTCLPGWTPAPGGTSSSFGSKKCYRFFDRASSWPAAQSACARAVSQLQAGLSRGGALRGALVTVQGLGENNWVARMCRGDSQERDCWVGMTRSYRGAGRIETGDDLEWAELENVAGELRYRSWATREPSDFENDEAGENCVAIQGSRKRAADQGEARWYDDGCEAEKPFVCQAFGISTPFSLSVSTELEMAGGYIVGAGTVTSSTLAKVSGDNGEVGILNGATLLNSGS--MDWSAAEACGWGGSLHNTGTLTFSG-AILLEAAEDGEGFLSDNAGAWPAVVNDEGAEVVFEAGSEVDLEWLLWNEGGSVLVEGELDSTGGGYSSSGTWTVEVGGEARFSDSSLIMHQSEVVVVTLQADRE-GLWGVSTS--------------QPSAIP-HATPPPPHVLE-QEALEEMSSIDEEGGVTVRRDGNGKLKRWQYGYRYVVTFDGTRALSGGSNTLALSCAGSADDCGCVDISGAIEGTGSSRVGCGAAIFDSSDDGASTSAEFDSSTCRVQGTVELETLKEGGETVISGGGVLVFANGGQYFLPSAVTADVEVMSGAEVVCPNSAAELVGAVNVSSGGVLWFAG 612
BLAST of mRNA_C-linearis_contig76.15241.1 vs. uniprot
Match: A0A7S3HNV4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNV4_9STRA) HSP 1 Score: 201 bits (510), Expect = 2.070e-48 Identity = 315/1216 (25.90%), Postives = 485/1216 (39.88%), Query Frame = 1
Query: 442 CARLSTVGYWEDGLNWDTGAAPASTDDVTIPADSGFVVFTADTTVSSLQISGGALVTHDSTCLPGWTPSPGGTSSSFGSKKCYRSSGDAASWAEAQSACASAVSPQHTGLPRSGALRGALVTVQDQDENNWVSRMCRG----DLLERDCWVGMTRSHGAGDGVVVGDDLEWAGLGQVVGESRYRSWAVREPSDFQGDQA-----GENCVAIRSSKRRAADQGETRWYDDECVSEKPFVCQAFGVSKPFLLTVS-----TELRLAGGYIV-GAG-TVISSTLAQVTG----NDGQVGVLNGATLLNSASGLMEWSAPSAVGWGGALRNMGELAFSGTATALWAAEDEAGFLADNVGP-WPTMVNEEGAKVVVGA----GAGVALEWLLWNK----GGSLVVRGALD--LTGGGYSSSGTLTVEAGG-EASFSGSSFIMHQSEVVELTLQADREVGGQDV------ETSAEVG---GYYRLAFGGEETSCIGYHATEDVVQASRAREALEQLTSVEEEGGVAVRRDGDGKLKRWQYGYRYVVTFDGARSLSSGN---ALALSCAGGANNCGC-------VDVTGSISGPNAVGCGTVGSAEDSGPQSAEFDSSACLVQATVELETLRGGGETVVSGGGTLTFSDGGQYLLPS-----AVAADMEVVGEAEVVCPQWAAELVGAVNVSSGGVLWFAGADWDALDAVHLLHSDPHTPGRAG-GAIASPPSFSATVNGDVSVENNGEIRLAATQSAALTVLGSLTLSGGGLSGQGRVEVEGSTLVVASGVSSDGGVGVDEASFLKNGVTLDMYGGGL--WSGGGLQARDGVSVVNRGQLS------------------------------LSADGGT-WFGHGGGFGAKEALDFDGDRWYANPLCGDSCTVEPWWDNREGGEVVAAEGSDTLLGFVL----YNEGTVRVENGGRLEWRAVGQGGGNGSMVLPGVNS--TIAFSDGGFVFGTNAVLTGEGVLEFSGGTGHELPNKETETNQVDVVSLSPLVKVSGHGVV----TFAGGRVSFGRGLTVVDKGAIVFSSPTSTTSISGDLXXXXXXXXXXPPPSVHASLAMAGGGGVEAEAPWXXXXXXXXXXXXXGAASRSSLTVEGKFDWGGGAISGNARVICAGESEWSSSSEAASTSTKKLLNSL-HLVSRGAIVWSTGDVVVSLGAAFVNQGTLLLLEQTDAYAGDGL 3786
CA T+G W+D WDT P S +VTIP D+G + + D +V+SL + GG ++ +D+ C GW+ PG +S KCY+ + EA+ C + G+ LV ++D+ E V RMCRG + CW+G+ +G+GD + + + W EP++ + GE C A+ + + W DD C KPFVCQ FG + + LTV T RL GG I GAG T IS +G + G G +L + L S +A G A +GE S + AL +GP + TM + V GA GAG + + N G+L V D L G S T+TV A + SG + + + EL + EV G+ E + +G G YRL G + T CI Y+AT AS L L SV + GV VRR G R+++GY Y + D R+ ++A+ C G N CGC VD TG C +A + P S D +AC+V T+ + + T SG G++ +G P AV A VV + W+ ++V+ GG L AG W + D+ + L++ T R ++++ F +V+ + G + L++ S+ +T S T GG + G+ STL + +++ G L+ G+TL + W+ G + DG GQL LS D G W G+ +G + + G WY NPLCGD C R G VV + DT + F L E T+ + + + + GG G+ V+ ++S + S G + + G+G L +GG+ H+L S+ + + G +V +G ++F GL + GA++ ++ I D+ P V A ++ E +AP A R LT W GG + G A ++ ++ E KK + SL LV++G W TGD++ S F+N GT+ ++ +A + +
Sbjct: 210 CAPFRTIGQWDDPYRWDTQQVPTSLTEVTIPVDAGVIKLSQDVSVASLTMLGGHILGYDTYCPFGWSVEPGDSSGI----KCYQLHEKPVPFNEAERTC--------NAVKGLGSESRHLVHIRDRAELLVVQRMCRGLTGYAAHSKGCWIGLWDQNGSGDFRWISPVAIGTPTDPDLDVGMFLDWRRDEPNNHTISEGLETPGGERCAALVPWQEDPLLLEQGSWNDDSCNVAKPFVCQIFGNTARYTLTVHGHTTLTSGRLEGGIIATGAGATDISHVTVFRSGRIHISTGGASCALGKVILQDGASLEVHS--NAFTMGDAY--LGEPVNSTLSAALQN---------HTLGPSFQTM--QSNVYVAAGATLLLGAGTMYQNITINARAFVDGTLFVSANTDVYLYQGADMSKSTVTVAAASSKVHLSGYNSRLSTYDAYELQVSHRGEVNGEFYRDFHREEANMHLGNTTGVYRLRVGADVTRCIPYNAT-----ASELTTILNALPSVTQRSGVTVRRYGSPTDPRFRFGYTYRIETDSVRTQFYAQGPLSMAIHCYGFDNGCGCAETKVVLVDATGMPQ------CPASSTATERSPLS---DPNACVVAPTLGVSVISSLAHTSASGAGSIVVEEGVHRFPPISTCTLAVTAGTGVVASDTIT---WS-----GISVTGGGRLVVAGTSWASWDSTYALYAPEWTTKRGELRSLSTASPFLMSVD-KFYLSGLGSV-LSSCPSSNMT-WNSGTWDGGIIGGR-------STLNIMQALNATG-----TTKSLRYGMTLFINEAATVKWTSGNISLADGADFTVEGQLVIDNSDGAEELFIGMAQLLEAPASDPTGAVLLSQDPGRDWHGY---YGDELTAELRGG-WYQNPLCGDQCLATNHLTIRAAGAVVCRD--DTQVTFSLPLDLVGESTLTIRSNVDI---TMASGGICGNKVVVDISSGTKLELSGGRMLMEATCTIQGQGDLLVTGGS-HDLS-----------FSIDARITIEGGTMVWPDSRGSGQTITFNGGLVMQKTGALIVFPFSTNIVIYDDVYLRDESLIQFPLIGVAAQASLFD----EQDAP--------------DPAPRGILTSNKTMRWEGGTLRGKA--------DFKANGELFLDGGKKYIKSLAKLVNQGHCEWGTGDLISSDSGDFLNLGTVQMMAGVRGFASNAM 1314
BLAST of mRNA_C-linearis_contig76.15241.1 vs. uniprot
Match: A0A6H5JYY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY7_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 4.280e-18 Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 1
Query: 3064 VNSTIAFSDGGFVFGTNAVLTGEGVLEFSGGTGHELPNKETETNQVDVVSLSPLVKVSGHGVVTFAGGRVSFGRGLTV 3297
+NST+ FS GGFVFG ++ +TGEGVLEFS GTGHELP E +SPLVKVSGHGVVTFAG + GRG+TV
Sbjct: 1 MNSTLVFSGGGFVFGGSSSVTGEGVLEFSAGTGHELPKGGQE--------VSPLVKVSGHGVVTFAGTYLLLGRGVTV 70 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig76.15241.1 >prot_C-linearis_contig76.15241.1 ID=prot_C-linearis_contig76.15241.1|Name=mRNA_C-linearis_contig76.15241.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1323bp MKHQTLFLLVWGSLVVLASAASPAWNTDSVQILLTSSLDTYNLELRASRQback to top mRNA from alignment at C-linearis_contig76:894329..902709- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig76.15241.1 ID=mRNA_C-linearis_contig76.15241.1|Name=mRNA_C-linearis_contig76.15241.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8381bp|location=Sequence derived from alignment at C-linearis_contig76:894329..902709- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig76:894329..902709- >mRNA_C-linearis_contig76.15241.1 ID=mRNA_C-linearis_contig76.15241.1|Name=mRNA_C-linearis_contig76.15241.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7938bp|location=Sequence derived from alignment at C-linearis_contig76:894329..902709- (Chordaria linearis ClinC8C monoicous)back to top |