mRNA_C-linearis_contig76.15164.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig76.15164.1
Unique NamemRNA_C-linearis_contig76.15164.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig76.15164.1 vs. uniprot
Match: A0A6H5KXH5_9PHAE (CMD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXH5_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 5.140e-31
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    4 SVVRALSEHQVVLEKTTGQRNHILDRWADGKGLKLTAQEEALVVFQKSNLKYLFGETGFNPPVPPLNPISVALHNPRFGAALWAVNTEAYRRK 282
            S   A+ +  +VL K T +R+ ILD WAD + L+LT +E  L  +Q+ NLK LFGETGFNPPVP  NPISV +HNPRF AALWAVNTEAYRRK
Sbjct:    5 STAAAMDQEAIVLRKETSERDRILDNWADAEALQLTDEEANLNEYQRKNLKLLFGETGFNPPVPARNPISVTMHNPRFSAALWAVNTEAYRRK 97
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXH5_9PHAE5.140e-3162.37CMD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig76contigC-linearis_contig76:191610..191891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size283
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930442.1172516-CDS-C-linearis_contig76:191609..1918911622930442.1172516-CDS-C-linearis_contig76:191609..191891Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 191610..191891 +
1690881071.4610267-CDS-C-linearis_contig76:191609..1918911690881071.4610267-CDS-C-linearis_contig76:191609..191891Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 191610..191891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig76.15164.1prot_C-linearis_contig76.15164.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig76 191610..191891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig76.15164.1

>prot_C-linearis_contig76.15164.1 ID=prot_C-linearis_contig76.15164.1|Name=mRNA_C-linearis_contig76.15164.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=94bp
MSVVRALSEHQVVLEKTTGQRNHILDRWADGKGLKLTAQEEALVVFQKSN
LKYLFGETGFNPPVPPLNPISVALHNPRFGAALWAVNTEAYRRK
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mRNA from alignment at C-linearis_contig76:191610..191891+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig76.15164.1 ID=mRNA_C-linearis_contig76.15164.1|Name=mRNA_C-linearis_contig76.15164.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at C-linearis_contig76:191610..191891+ (Chordaria linearis ClinC8C monoicous)
ATGTCGGTGGTAAGAGCATTGTCGGAGCACCAGGTGGTCCTCGAGAAGAC
GACGGGCCAGCGCAACCACATCCTGGATCGGTGGGCAGACGGCAAAGGTC
TCAAACTCACCGCACAGGAAGAAGCACTGGTCGTGTTCCAAAAGTCCAAC
CTGAAGTACCTCTTTGGTGAGACCGGCTTCAACCCGCCAGTGCCGCCGCT
CAACCCCATCTCTGTGGCCCTGCACAACCCAAGGTTTGGCGCAGCGCTCT
GGGCAGTCAACACTGAGGCTTATCGCCGCAAG
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Coding sequence (CDS) from alignment at C-linearis_contig76:191610..191891+

>mRNA_C-linearis_contig76.15164.1 ID=mRNA_C-linearis_contig76.15164.1|Name=mRNA_C-linearis_contig76.15164.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at C-linearis_contig76:191610..191891+ (Chordaria linearis ClinC8C monoicous)
ATGTCGGTGGTAAGAGCATTGTCGGAGCACCAGGTGGTCCTCGAGAAGAC
GACGGGCCAGCGCAACCACATCCTGGATCGGTGGGCAGACGGCAAAGGTC
TCAAACTCACCGCACAGGAAGAAGCACTGGTCGTGTTCCAAAAGTCCAAC
CTGAAGTACCTCTTTGGTGAGACCGGCTTCAACCCGCCAGTGCCGCCGCT
CAACCCCATCTCTGTGGCCCTGCACAACCCAAGGTTTGGCGCAGCGCTCT
GGGCAGTCAACACTGAGGCTTATCGCCGCAAGATGTCGGTGGTAAGAGCA
TTGTCGGAGCACCAGGTGGTCCTCGAGAAGACGACGGGCCAGCGCAACCA
CATCCTGGATCGGTGGGCAGACGGCAAAGGTCTCAAACTCACCGCACAGG
AAGAAGCACTGGTCGTGTTCCAAAAGTCCAACCTGAAGTACCTCTTTGGT
GAGACCGGCTTCAACCCGCCAGTGCCGCCGCTCAACCCCATCTCTGTGGC
CCTGCACAACCCAAGGTTTGGCGCAGCGCTCTGGGCAGTCAACACTGAGG
CTTATCGCCGCAAG
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