mRNA_C-linearis_contig76.15163.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig76.15163.1
Unique NamemRNA_C-linearis_contig76.15163.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig76.15163.1 vs. uniprot
Match: D7FVU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU9_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.260e-45
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 1 
Query:    1 MDAANAKTFKLDASKGGCSGMFWRTKPEMSASTSSSDWPRNGTILKGWYVEEHPGWVKIDHPGGYWMPVEQHGKAVMHEV 240
            MDAA AK+FKLDAS GGCSGMFWRTKPEM ++TSSSDWPRNGT+LKGWYV EHPGWVKIDHP GYWMPVEQHGKAVMHEV
Sbjct:    1 MDAAAAKSFKLDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVTEHPGWVKIDHPEGYWMPVEQHGKAVMHEV 80
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BLAST of mRNA_C-linearis_contig76.15163.1 vs. uniprot
Match: A0A835ZIY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY5_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.330e-33
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    1 MDAANAKTFKLDASKGGCSGMFWRTKPEMSASTSSSDWPRNGTILKGWYVEEHPGWVKIDHPGGYWMPVEQHGKAVMHE 237
            MD A  K F LDA   GC+GMFWR++P M A+ S+SDWPRNG++L GWYV+EHPGWV+IDHP GYWMPVEQ G  V+HE
Sbjct:    1 MDPALRKEFVLDAGSKGCTGMFWRSEPRMGATASASDWPRNGSVLHGWYVQEHPGWVRIDHPNGYWMPVEQDGHTVLHE 79
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BLAST of mRNA_C-linearis_contig76.15163.1 vs. uniprot
Match: A0A835TBT2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TBT2_CHLIN)

HSP 1 Score: 121 bits (303), Expect = 5.890e-30
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:    4 DAANAKT---FKLDASKGGCSGMFWRTKPEMSASTSSSDWPRNGTILKGWYVEEHPGWVKIDHPGGYWMPVEQHGKAVMH 234
            D+  A+T    +LDAS  GCSGMFWR+KP+M+AS S+ DWPRNG + +GW  +EHPGWVK+DH  GYWMP+EQHGK V H
Sbjct:    5 DSFTAETKIKIRLDASANGCSGMFWRSKPDMNASVSAPDWPRNGAVFQGWKSQEHPGWVKVDHEKGYWMPIEQHGKPVCH 84
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BLAST of mRNA_C-linearis_contig76.15163.1 vs. uniprot
Match: A0A8J4FZJ0_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FZJ0_9CHLO)

HSP 1 Score: 121 bits (303), Expect = 1.310e-29
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:   13 NAKTFKLDASKGGCSGMFWRTKPEMSASTSSSDWPRNGTILKGWYVEEHPGWVKIDHPGGYWMPVEQHGKAVMH 234
            N    ++DASK GC+GMFWR+KPEM+AS S+ DWPRNGT+ KGW   EHPGWVK+DHP GYW+P++Q+G  V H
Sbjct:   40 NKVNIRMDASKNGCTGMFWRSKPEMNASVSAPDWPRNGTVFKGWKSLEHPGWVKVDHPKGYWLPIQQYGNDVCH 113
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BLAST of mRNA_C-linearis_contig76.15163.1 vs. uniprot
Match: A0A7S0S545_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S545_9CHLO)

HSP 1 Score: 121 bits (303), Expect = 1.520e-29
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    4 DAANAKTFKLDASKGGCSGMFWRTKPEMSASTSSSDWPRNGTILKGWYVEEHPGWVKIDHPGGYWMPVEQHGKAVMH 234
            DA+    F LDAS+ GC+GM+WR+KP+M+AS S+ DWPRNG  L+GW    HPGWVK+DHP GYW+P+EQHGK V+H
Sbjct:   43 DASTKINFTLDASQNGCTGMYWRSKPDMNASVSAPDWPRNGAKLQGWKSVAHPGWVKVDHPQGYWLPIEQHGKPVVH 119
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BLAST of mRNA_C-linearis_contig76.15163.1 vs. uniprot
Match: A0A835XUH0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XUH0_9CHLO)

HSP 1 Score: 119 bits (298), Expect = 2.890e-29
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   10 ANAKTFKLDASKGGCSGMFWRTKPEMSASTSSSDWPRNGTILKGWYVEEHPGWVKIDHPGGYWMPVEQHGKAVMH 234
            A   T +LDAS  GC+GMFWR+KPEM+AS  + DWPRNG   KGW   EHPGWVK+DHP  YW+P+EQHGK V H
Sbjct:   10 ATKVTIRLDASANGCTGMFWRSKPEMNASVQAPDWPRNGATFKGWKSVEHPGWVKVDHPKDYWLPIEQHGKPVCH 84
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BLAST of mRNA_C-linearis_contig76.15163.1 vs. uniprot
Match: A0A8J4G156_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G156_9CHLO)

HSP 1 Score: 120 bits (300), Expect = 4.080e-29
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   28 KLDASKGGCSGMFWRTKPEMSASTSSSDWPRNGTILKGWYVEEHPGWVKIDHPGGYWMPVEQHGKAVMH 234
            ++DASK GC+GMFWR+KPEM+AS S+ DWPRNGT+ KGW   EHPGWVK+DHP GYW+P++Q+G  V H
Sbjct:   50 RMDASKNGCTGMFWRSKPEMNASVSAPDWPRNGTVFKGWKSLEHPGWVKVDHPKGYWLPIQQYGNDVCH 118
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BLAST of mRNA_C-linearis_contig76.15163.1 vs. uniprot
Match: A8J4I5_CHLRE (Predicted protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J4I5_CHLRE)

HSP 1 Score: 119 bits (299), Expect = 4.480e-29
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   28 KLDASKGGCSGMFWRTKPEMSASTSSSDWPRNGTILKGWYVEEHPGWVKIDHPGGYWMPVEQHGKAVMH 234
            +LDAS  GCSGMFWR+KP+M+AS S+ DWPRNG +  GW  +EHPGWVK+DH  GYWMP+EQHGK V H
Sbjct:   40 RLDASANGCSGMFWRSKPDMNASVSAPDWPRNGAVFLGWKSQEHPGWVKVDHEKGYWMPIEQHGKPVCH 108
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BLAST of mRNA_C-linearis_contig76.15163.1 vs. uniprot
Match: A0A150GII6_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GII6_GONPE)

HSP 1 Score: 116 bits (290), Expect = 8.660e-28
Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   22 TFKLDASKGGCSGMFWRTKPEMSASTSSSDWPRNGTILKGWYVEEHPGWVKIDHPGGYWMPVEQHGKAVMH 234
            + ++DASK GC+GMFWR+KP+M+AS ++ DWPRNGT+ KGW   EHPGWVK+DHP  YW+P++Q+G  V H
Sbjct:   40 SIRMDASKNGCTGMFWRSKPDMNASVNAPDWPRNGTVFKGWKSVEHPGWVKVDHPQNYWLPIQQYGNDVCH 110
[Close]
BLAST of mRNA_C-linearis_contig76.15163.1 vs. uniprot
Match: A0A250X2J7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X2J7_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 9.500e-28
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    4 DAANAKTFKLDASKGGCSGMFWRTKPEMSASTSSSDWPRNGTILKGWYVEEHPGWVKIDHPGGYWMPVEQHGKAVMH 234
            +++   +  LDASKGGC+GMFWR+KP M+A+ S+ DWPRNGT L+GW  + +PGWVKIDHP GYWMP+ Q+G  V+H
Sbjct:   25 ESSEKVSMTLDASKGGCTGMFWRSKPSMNATASAPDWPRNGTELQGWISKANPGWVKIDHPNGYWMPISQNGHDVIH 101
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FVU9_ECTSI1.260e-4588.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZIY5_9STRA2.330e-3367.09Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835TBT2_CHLIN5.890e-3062.50Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A8J4FZJ0_9CHLO1.310e-2963.51Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A7S0S545_9CHLO1.520e-2962.34Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A835XUH0_9CHLO2.890e-2964.00Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A8J4G156_9CHLO4.080e-2966.67Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A8J4I5_CHLRE4.480e-2968.12Predicted protein n=3 Tax=Chlamydomonas TaxID=3052... [more]
A0A150GII6_GONPE8.660e-2860.56Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A250X2J7_9CHLO9.500e-2859.74Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig76contigC-linearis_contig76:179029..181288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue8.3e-38
Seed eggNOG ortholog2880.D7FVU9
Hectar predicted targeting categoryother localisation
EggNOG OGs2C7IW@1,2SCDY@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002230.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1360
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig76.15163.1prot_C-linearis_contig76.15163.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig76 179029..180180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930442.0041435-CDS-C-linearis_contig76:179028..1790991622930442.0041435-CDS-C-linearis_contig76:179028..179099Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 179029..179099 +
1690881071.4140341-CDS-C-linearis_contig76:179028..1790991690881071.4140341-CDS-C-linearis_contig76:179028..179099Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 179029..179099 +
1622930442.033566-CDS-C-linearis_contig76:179735..1798071622930442.033566-CDS-C-linearis_contig76:179735..179807Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 179736..179807 +
1690881071.4295144-CDS-C-linearis_contig76:179735..1798071690881071.4295144-CDS-C-linearis_contig76:179735..179807Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 179736..179807 +
1622930442.0499003-CDS-C-linearis_contig76:180071..1801801622930442.0499003-CDS-C-linearis_contig76:180071..180180Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 180072..180180 +
1690881071.439892-CDS-C-linearis_contig76:180071..1801801690881071.439892-CDS-C-linearis_contig76:180071..180180Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 180072..180180 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930442.067711-UTR-C-linearis_contig76:180180..1812881622930442.067711-UTR-C-linearis_contig76:180180..181288Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 180181..181288 +
1690881071.4498582-UTR-C-linearis_contig76:180180..1812881690881071.4498582-UTR-C-linearis_contig76:180180..181288Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 180181..181288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig76.15163.1

>prot_C-linearis_contig76.15163.1 ID=prot_C-linearis_contig76.15163.1|Name=mRNA_C-linearis_contig76.15163.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=84bp
MDAANAKTFKLDASKGGCSGMFWRTKPEMSASTSSSDWPRNGTILKGWYV
EEHPGWVKIDHPGGYWMPVEQHGKAVMHEVVDA*
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mRNA from alignment at C-linearis_contig76:179029..181288+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig76.15163.1 ID=mRNA_C-linearis_contig76.15163.1|Name=mRNA_C-linearis_contig76.15163.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2260bp|location=Sequence derived from alignment at C-linearis_contig76:179029..181288+ (Chordaria linearis ClinC8C monoicous)
ATGGACGCGGCGAACGCAAAGACCTTCAAATTGGACGCAAGCAAAGGCGG
CTGCAGCGGCATGTTTTGGAGGTGAGCCCATCTACGCGTGGCTGCAAGGA
AAACGCAGGCTTTAAAACTTTAAACAAAGCACAGAGGTGCCGGCGAGATC
AAACCACTTCCGCATTCTACACACCATCCACCTAATTGTTTTGTTGCGGG
CATGGACGACATTTTGTGCGGTGCGGTCACTTTTCGGTTCAGGACCGAAT
CGGTTCGTTTACACGTTTACACTAACTCCCCGGCAGCTCGCACCATAACA
TAAGTGCCTATTTTGGCCGGAAAGACATACCAAAAAAGGACTTGACGCGA
GTGTATGCCGGCTGTTTTGGAAACGAACGTATGGCATTTTCAAAGAGAGT
AACACGGCTGCTTCGAGTCCAAAAATGCAGTGCAATCTGATAACGGTGTG
CAGACTACACAGTTAGAGAAACATGAAGCCAAAATGGCCTTGTTGGATAT
ATTCTACTGGCATACGAAGATGCTCCTTGTTTTTCGGTAAACCTACCATG
AAAAGTTTCAAGAAGAAGGAGAAGAAGACTACACATGCGTGTCGTACCAG
TTTTTTTTACGCTGAACATGTCTACTGTTTCCTTTCGCCCTCCGTTTGTA
CGTTCTCGCCGGCCGGTACTTGTCGCCGACAATTTGTAAAAAACTGTTTT
TTGCCAGAACGAAGCCGGAGATGAGCGCTTCCACGTCCAGCTCCGACTGG
CCTCGCAACGGCACGATTCTCAAGGGCTGGTAAGTGTCGTGCTCCACATG
TTCCTGTTGTGCTCCTTTCTCTCTCCCCTCTGAACAATTTACCCGACCCC
TGCCAGAAGGGTTTGCAGCGCCAAGTACGAAGCGGGACTGCTGTTTGTGC
TGTTTAAGCGCTCGTACATTTAGAGCAATTGCAGGGCATCGTTCTACACA
CAGGCAACAGGAAGTCATACATACTTCAGTCACCACTAACCTATCCTGCT
TTTCCCGACCGATGGGGTTGGATTTTCGTTTTTCGATCTACAGGTACGTC
GAGGAGCACCCTGGGTGGGTGAAGATCGATCACCCGGGAGGATACTGGAT
GCCAGTCGAGCAGCACGGAAAGGCCGTCATGCACGAGGTCGTTGACGCGT
AGTGTGTCTTGTGTTTGAGGGCTCCGGTTGGAGGCGTACTACCCGAGCCG
ACACGACTTATTCGGCGTTCAAGCTTTGTCGGCAATTGCAGAGGTCTGCT
TTGGAGCAGTCACCTCGAAACAACACCTCGTGACTAACTGGCGCGCGAAA
TGTCTTGTCTACCTTGTTTCAAAAGTCCCCCCCCCCAGCAGTTCGCTGCT
TCCAGTCGGGAATCCAATGCCCCCTTAGCCTTCCTACTCTGGATTAGCGG
GGGCGTTCCATCTGACCACGTGGGTCCGTAGGGGGGGCAGTATGGCGGTA
GAGTGAAAAGGCCCTGTGGTGTTGATTCTGCAGCGCTTAGCGCTTTTGCT
GCTGCGCGGCGGTGGGTGTACGAGCAGGCAACCTGTACACCTCCGTTACG
TATAGTACAGCATGTGAGTTTCGATCCAGATCCTTTTGCATTTGTTTGTA
AACAATAGCTTTTCGATGTGATATTCGGGCGACGGATGACCCCCCCCCCT
AAAGTAGCCCTGCCGAGCGTGTTGCCGTTGGTGTTCTTTGTATTTGGTGT
CCCGTTCACTGCTTCAGGTTTGTGCGTGTTAATTTGTGTTTCGCCTTCCC
TTGCACTCCTTGAAGACATTGGACGCATTTGAGTCCCCCAAGAAGTCGTT
GATTGGGCGGGGGGAGACGGGGGGCTAGAGAAGGGGCCAACCTTGGACTG
TTTTCGTGCCCCAACGTGTAGGGTACGGGGTGCTGGTTGCGTAGAGGTAC
GCTCTCACCGAAAACAAAAAATAATTGAATCCGAAAAGCAGATCTTCCTT
TCCCTGGCTTTCAGGGATGCGGCGTTTTTTTGCCCTGGGCTGTGCTCCCG
AGGGCTCAATGTTCTTAAGGACGCCCGCTTAGCGATACGCGTGAAGTTGG
AGGTCCCGTGATGAGCTGAGTTTTAGTTCCCACCGTAGGTTGGTCTTTTG
TGTATGGTGGCAAACGGCGCGAGTCACGCGAGGCTTTTCCTGAGTTCGCC
TCGGTTTTGCCACCGCAATAGATGTTTGTTACAGCTGCATCCGGAAAGAG
CCACAACAGAACAACCGATGAAGCCGTGGCACTTCGAAGCGCAAAGCTGT
CATCAGCACG
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Coding sequence (CDS) from alignment at C-linearis_contig76:179029..181288+

>mRNA_C-linearis_contig76.15163.1 ID=mRNA_C-linearis_contig76.15163.1|Name=mRNA_C-linearis_contig76.15163.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at C-linearis_contig76:179029..181288+ (Chordaria linearis ClinC8C monoicous)
ATGGACGCGGCGAACGCAAAGACCTTCAAATTGGACGCAAGCAAAGGCGG
CTGCAGCGGCATGTTTTGGAGATGGACGCGGCGAACGCAAAGACCTTCAA
ATTGGACGCAAGCAAAGGCGGCTGCAGCGGCATGTTTTGGAGAACGAAGC
CGGAGATGAGCGCTTCCACGTCCAGCTCCGACTGGCCTCGCAACGGCACG
ATTCTCAAGGGCTGAACGAAGCCGGAGATGAGCGCTTCCACGTCCAGCTC
CGACTGGCCTCGCAACGGCACGATTCTCAAGGGCTGGTACGTCGAGGAGC
ACCCTGGGTGGGTGAAGATCGATCACCCGGGAGGATACTGGATGCCAGTC
GAGCAGCACGGAAAGGCCGTCATGCACGAGGTCGTTGACGCGTAGGTACG
TCGAGGAGCACCCTGGGTGGGTGAAGATCGATCACCCGGGAGGATACTGG
ATGCCAGTCGAGCAGCACGGAAAGGCCGTCATGCACGAGGTCGTTGACGC
GTAG
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