mRNA_C-linearis_contig74.15036.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15036.1
Unique NamemRNA_C-linearis_contig74.15036.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 8.180e-53
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 3 
Query:  345 MSGFGGG-RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVEV 632
            MSGFGGG RGGG RVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMK+DERKQLGRIMLKGDTITLMQSVEV
Sbjct:    1 MSGFGGGGRGGGGRVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSVEV 97
[Close]
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A835YX06_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX06_9STRA)

HSP 1 Score: 150 bits (378), Expect = 4.650e-41
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 3 
Query:  345 MSGFGGGRG---GGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVE 629
            MSG+GG  G   GG R+KKVMTQPISLIFRFLQNRTRVQIWLYENT MRIEG+I GFDEYMNLVLDEAEEVD+K + R Q+GRI+LKGDTITLMQ V+
Sbjct:    1 MSGYGGRGGPPVGGQRMKKVMTQPISLIFRFLQNRTRVQIWLYENTTMRIEGRISGFDEYMNLVLDEAEEVDLKKNVRTQVGRILLKGDTITLMQGVD 98
[Close]
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A6U0Y1E1_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0Y1E1_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.400e-36
Identity = 68/95 (71.58%), Postives = 80/95 (84.21%), Query Frame = 3 
Query:  345 MSGFGGGRGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVE 629
            MSG+G G GG  RVKKVMTQPI+LIFRFLQNRTR+ IWLYEN+   IEG+I+GFDEYMNLVLD+A+E+D K + R  LGRI+LKGDTITLMQ  +
Sbjct:    1 MSGYGPG-GGSTRVKKVMTQPINLIFRFLQNRTRILIWLYENSNTMIEGRIVGFDEYMNLVLDDAQEIDQKQETRTDLGRILLKGDTITLMQEAQ 94
[Close]
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: R1EMN3_EMIHU (Small nuclear ribonucleoprotein E n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EMN3_EMIHU)

HSP 1 Score: 132 bits (332), Expect = 1.920e-34
Identity = 63/83 (75.90%), Postives = 77/83 (92.77%), Query Frame = 3 
Query:  381 RVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVE 629
            +V+K+MTQPI+LIFRFLQN+TRVQIWLYENT++RIEG+I+GFDEYMNLVLDEAEE+ MK  ERK LGRI+LKGD+ITLM + +
Sbjct:    4 KVQKIMTQPINLIFRFLQNKTRVQIWLYENTELRIEGKIIGFDEYMNLVLDEAEELLMKKKERKPLGRILLKGDSITLMMTAQ 86
[Close]
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A6P8W5V7_GYMAC (Small nuclear ribonucleoprotein E n=6 Tax=Clupeocephala TaxID=186625 RepID=A0A6P8W5V7_GYMAC)

HSP 1 Score: 132 bits (332), Expect = 2.160e-34
Identity = 65/89 (73.03%), Postives = 76/89 (85.39%), Query Frame = 3 
Query:  366 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVEV 632
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV V
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSVTV 92
[Close]
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: Q6AZK6_XENTR (Small nuclear ribonucleoprotein E n=2 Tax=Tetrapoda TaxID=32523 RepID=Q6AZK6_XENTR)

HSP 1 Score: 132 bits (331), Expect = 3.030e-34
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 3 
Query:  366 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 626
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+ +K+  RKQLGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 90
[Close]
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A821IDN7_9NEOB (Small nuclear ribonucleoprotein E n=5 Tax=Euteleostomi TaxID=117571 RepID=A0A821IDN7_9NEOB)

HSP 1 Score: 132 bits (331), Expect = 3.030e-34
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 3 
Query:  366 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 626
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+ +K+  RKQLGRIMLKGD ITL+QSV
Sbjct:    4 RGQGPKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 90
[Close]
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: Q6GPZ6_XENLA (Small nuclear ribonucleoprotein E n=1 Tax=Xenopus laevis TaxID=8355 RepID=Q6GPZ6_XENLA)

HSP 1 Score: 131 bits (330), Expect = 4.240e-34
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 3 
Query:  366 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 626
            RG G +V+KVM QPI+LIFR+LQNR+RVQ+WLYE   MRIEG I+GFDEYMN+VLD+AEE+ +K+  RKQLGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRVQVWLYEQVNMRIEGCIIGFDEYMNIVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 90
[Close]
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A669EMR4_ORENI (Small nuclear ribonucleoprotein E n=31 Tax=Clupeocephala TaxID=186625 RepID=A0A669EMR4_ORENI)

HSP 1 Score: 131 bits (329), Expect = 5.940e-34
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 3 
Query:  366 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 626
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 90
[Close]
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A553MW39_9TELE (Small nuclear ribonucleoprotein E n=2 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A553MW39_9TELE)

HSP 1 Score: 131 bits (329), Expect = 5.940e-34
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 3 
Query:  366 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 626
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 90
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI8.180e-5396.91Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A835YX06_9STRA4.650e-4179.59Small nuclear ribonucleoprotein E n=1 Tax=Tribonem... [more]
A0A6U0Y1E1_9STRA4.400e-3671.58Small nuclear ribonucleoprotein E n=1 Tax=Rhizochr... [more]
R1EMN3_EMIHU1.920e-3475.90Small nuclear ribonucleoprotein E n=1 Tax=Emiliani... [more]
A0A6P8W5V7_GYMAC2.160e-3473.03Small nuclear ribonucleoprotein E n=6 Tax=Clupeoce... [more]
Q6AZK6_XENTR3.030e-3472.41Small nuclear ribonucleoprotein E n=2 Tax=Tetrapod... [more]
A0A821IDN7_9NEOB3.030e-3472.41Small nuclear ribonucleoprotein E n=5 Tax=Euteleos... [more]
Q6GPZ6_XENLA4.240e-3472.41Small nuclear ribonucleoprotein E n=1 Tax=Xenopus ... [more]
A0A669EMR4_ORENI5.940e-3473.56Small nuclear ribonucleoprotein E n=31 Tax=Clupeoc... [more]
A0A553MW39_9TELE5.940e-3473.56Small nuclear ribonucleoprotein E n=2 Tax=Osteoglo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:627671..630494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.7
Seed ortholog evalue4e-44
Seed eggNOG ortholog2880.D8LD43
Preferred nameSNRPE
KEGG koko:K11097,ko:K12272,ko:K18754
KEGG TC3.A.5.8
KEGG Pathwayko03040,ko03060,map03040,map03060
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035770,GO:0036464,GO:0042303,GO:0042633,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsCOG1958@1,KOG1774@2759
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein E
Ec32 orthologEc-11_000380.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03019,ko03032,ko03041,ko04031
Exons4
Model size1239
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15036.1prot_C-linearis_contig74.15036.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 628275..630150 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930416.7917483-UTR-C-linearis_contig74:627670..6282741622930416.7917483-UTR-C-linearis_contig74:627670..628274Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 627671..628274 -
1690881058.8542006-UTR-C-linearis_contig74:627670..6282741690881058.8542006-UTR-C-linearis_contig74:627670..628274Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 627671..628274 -
1622930416.8904374-UTR-C-linearis_contig74:630150..6304941622930416.8904374-UTR-C-linearis_contig74:630150..630494Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 630151..630494 -
1690881058.9090137-UTR-C-linearis_contig74:630150..6304941690881058.9090137-UTR-C-linearis_contig74:630150..630494Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 630151..630494 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930416.8145936-CDS-C-linearis_contig74:628274..6282841622930416.8145936-CDS-C-linearis_contig74:628274..628284Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 628275..628284 -
1690881058.8687365-CDS-C-linearis_contig74:628274..6282841690881058.8687365-CDS-C-linearis_contig74:628274..628284Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 628275..628284 -
1622930416.839319-CDS-C-linearis_contig74:628654..6287341622930416.839319-CDS-C-linearis_contig74:628654..628734Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 628655..628734 -
1690881058.8794117-CDS-C-linearis_contig74:628654..6287341690881058.8794117-CDS-C-linearis_contig74:628654..628734Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 628655..628734 -
1622930416.8587067-CDS-C-linearis_contig74:629091..6291991622930416.8587067-CDS-C-linearis_contig74:629091..629199Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 629092..629199 -
1690881058.8915524-CDS-C-linearis_contig74:629091..6291991690881058.8915524-CDS-C-linearis_contig74:629091..629199Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 629092..629199 -
1622930416.8739648-CDS-C-linearis_contig74:630057..6301501622930416.8739648-CDS-C-linearis_contig74:630057..630150Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 630058..630150 -
1690881058.9005241-CDS-C-linearis_contig74:630057..6301501690881058.9005241-CDS-C-linearis_contig74:630057..630150Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 630058..630150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15036.1

>prot_C-linearis_contig74.15036.1 ID=prot_C-linearis_contig74.15036.1|Name=mRNA_C-linearis_contig74.15036.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
MSGFGGGRGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQ
ILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVEV*
back to top

mRNA from alignment at C-linearis_contig74:627671..630494-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15036.1 ID=mRNA_C-linearis_contig74.15036.1|Name=mRNA_C-linearis_contig74.15036.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2824bp|location=Sequence derived from alignment at C-linearis_contig74:627671..630494- (Chordaria linearis ClinC8C monoicous)
GAAAAATCGACAAGAACTCAGAAATAACAACCAAAGAACCAAATTGGAAA
TAACGTTTCAGCGCGGGGGGCATAACCCTCATTGGATGTATCACATGGTA
CCCTCCAATAGAGAACCGCATCTGTGCAGCCCCCGCCTGCTGGAGGAGAT
CTTGCGTCGCACCCTCAACAAGCACCAACGGAACCCAGGCGACCTATCAG
ACGACCTGCTGTAGAAAGAGAGCGGTTGTCGAATTGGAACTCGCCTCGTT
TCTTGCAAAGAAATCGAGGAGCTGCTTTTTTTTAGCGTGAGGGAGAGCAA
GGACACCAGCTTAGCTTGTCAGGGCCACAGCAGTTAGCGTCACCATGTCG
GGCTTCGGGGGAGGACGGGGGGGTGGGGCAAGGGTCAAGAAGGTTATGAC
CCAGCCCATCTCTCTTATCTTCAGGTTCCTGCAAAACGTGAGTAGTCCTG
AGTGCTTTTGTTTTGGGCAGCACACGCACAACAGCAGCTCAGTACTGTAG
TCCAGGCCGACCCGGAGTCTCGCGCACCCGAGGCTGCCCCAGGCTGCGGA
TAGTGGTGGGACTGTTGTACGGTTGTTTCCCCCCGCCTTCTTGTCCACTA
TATCCACAGAGGCCATAGAAATGCAGGTTGATGTTCGTGGTATCATATTT
TTATATTTTTTGCGTGATTTTTCGGAGGCCATTTGCTCCCGCTGCCCCTG
GCAACGATGGACGGTGTTTGCCGGCCCCTGCTCCTGCCTCTGCACCTGCT
GTTTTGTCGTGTTGTCCATCACCAACACCCATCCCGCGCACAAGAAATAA
CAACGACAACGCGATAACACTGCAAGACCTCAACGCCGATGCCGCATAGT
CTTAAGTCTTTCACGGGGGTTCGCCCTCAGGTTGCGGGTCGGCAAAAGCA
TACTCTCCGAATTTGAACGTAGACCCACTGGATACACCCACCGCACCCAA
CGACACCGTATCTACTGGTGTACGCCTTTGTTGCACGGAGATCCAGCTGA
AAGGCGAGGCATGAGCGTCACATGTACTGTTGGGGGAGTGGATCGATCTG
TCTATGCTCTGCTCGGGTGGAGAAAGTCCTATCAAATATCGTAATAGCCG
TTAGTCTTGTACGCTATTTTTTAACTATCAACACGTACACGTACATCCGC
ACAAGCTTTTCGCCTTCCCTTAACCGCATGACCATGAATGATTAATTACC
GTTCGAACAACCCCCCAACACTGCGGCCACTTTTTTACTGCTGTAGATCG
CCTGACTCACTGTCTTTCTTTCTCGCTCCCATCACTCGCACGCAGCGAAC
GAGGGTTCAGATCTGGCTTTACGAGAACACAAAGATGCGGATAGAAGGAC
AGATCCTCGGGTTCGACGAGTACATGAACCTGGTATTGGACGAGGCGGAA
GAGGTAAGAGGTCTGTTGTTGCGTCATAAAGCCGGTGTTTGTTGCATACA
AGGCTGACGGCGTTACGCGTCGCTTAGGAACCGGCTACAAGGTGTGTGTC
CTCTCGCGTTATTTTGTCACAGTATTTCCGTGCATCACTTCGGTGCTCGA
GTTGTGGATTGTATTGGCGCAGGGTAGCATGGAAGAGCAGCGAAGCTGGT
GCTGGATTCTATGTAGGCGCTTTTTGTTGCATACAGTGCTGCTTGTTCTG
CGTCTATACATGTGATGCTGTGACGACGAGCATTTGAGATTCACTTGACA
CAAGCAGCTTACTTACTGCTTGCTCGTATCGTCCTTGCCCTCTGCTGATG
TGTTCGCCAGGTGGACATGAAGAGCGATGAGCGCAAACAACTGGGGCGCA
TCATGCTAAAGGGAGACACCATCACCCTCATGCAGAGCGTGTAAGTGTTA
TCCGCGAGTGTTCTTCATCGTGCGGCATGTGTGCCATCGCTGCCGAGCTT
TTGGACTAAACAGCGACCAGCTAAGATGCGTGGCTCAAAAGCGGTTGTTT
TTTCGCTAGAAAGAACGCTGTCGGCGAATGGCGGCTACAGCTACGTTTTA
TTTTTGTTTTTGTCTGCTTCAATGCTGAGTTGAGCGGTTCCCACGTTCTT
TTTCTTGCGTTTTTTTTGTCTCTTTTTATCGGTCTCTTGTTGCTAAATCG
CCATTCAAAGCAATCAATTGAGGACTCTGCCACGGCCTCCTTACTCTGCC
ATTTTGTTCTCCCGCCGCGTCCTCCTCCCTCCACCTGCCAACACCAAACA
CCCACCATAGCGAGGTTTGATTTATGCCATGTTATCATGCGGCGGCGAAG
TGGAGAGGTGGACGATGCTCTTGGCGTGGAAAGGGGTTGGGGAAGGGAGA
GGGAAAGAGAGAGGGCAGGAGCGCGCCGTGGAAATGGGGGTTTGCCACGA
TCTTGGGTGTTGATTAGAAAGCTGGCTGTTGGGTGGGAGATGCGGGGGAG
GATTGACCGTGACAGCGATGCTGATTGAGGTTGGAGCAAAACAGGGGGAA
CGTGCCGCTTGCCCGAGCTGGGTTTTCGCGAGGCGGTTCTTGATGCTTCT
GCTTACACCAAGTTTTCCAACAAGGGGGTTCGCATGCCTTAGCTACTTGT
AGCCTAACGCTTCTTGTGTGTTGGAAGTTTGCCGCTGACGAGTCGGCTCA
CGCAGCCTTGACTCTGAATGCATGATTCAGGTACAGATTGTTATTTTTTC
TAATGCGCAGTTCTTTTCGACAGAGGAGCATCTGTTTGTCTAATGCCGCT
GAGACAGCTGTGAATCACTTCGTGCACTCGATGGCCCGGAAACCGCCTAA
GGCCTTCTAGTTGGAGTTCTGTAAGGGGCGTGTGTGGCAATGGGCCGCAC
ACCAGCGCCCAAAACATGTACGGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig74:627671..630494-

>mRNA_C-linearis_contig74.15036.1 ID=mRNA_C-linearis_contig74.15036.1|Name=mRNA_C-linearis_contig74.15036.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at C-linearis_contig74:627671..630494- (Chordaria linearis ClinC8C monoicous)
ATGTCGGGCTTCGGGGGAGGACGGGGGGGTGGGGCAAGGGTCAAGAAGGT
TATGACCCAGCCCATCTCTCTTATCTTCAGGTTCCTGCAAAACATGTCGG
GCTTCGGGGGAGGACGGGGGGGTGGGGCAAGGGTCAAGAAGGTTATGACC
CAGCCCATCTCTCTTATCTTCAGGTTCCTGCAAAACCGAACGAGGGTTCA
GATCTGGCTTTACGAGAACACAAAGATGCGGATAGAAGGACAGATCCTCG
GGTTCGACGAGTACATGAACCTGGTATTGGACGAGGCGGAAGAGCGAACG
AGGGTTCAGATCTGGCTTTACGAGAACACAAAGATGCGGATAGAAGGACA
GATCCTCGGGTTCGACGAGTACATGAACCTGGTATTGGACGAGGCGGAAG
AGGTGGACATGAAGAGCGATGAGCGCAAACAACTGGGGCGCATCATGCTA
AAGGGAGACACCATCACCCTCATGCAGAGCGTGTGGACATGAAGAGCGAT
GAGCGCAAACAACTGGGGCGCATCATGCTAAAGGGAGACACCATCACCCT
CATGCAGAGCGTCGAGGTTTGACGAGGTTTGA
back to top