prot_C-linearis_contig74.15036.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig74.15036.1
Unique Nameprot_C-linearis_contig74.15036.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length97
Homology
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 2.310e-57
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0
Query:    1 MSGFGGG-RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVEV 96
            MSGFGGG RGGG RVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMK+DERKQLGRIMLKGDTITLMQSVEV
Sbjct:    1 MSGFGGGGRGGGGRVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSVEV 97          
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A835YX06_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX06_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.750e-45
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 0
Query:    1 MSGFGGGRG---GGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVE 95
            MSG+GG  G   GG R+KKVMTQPISLIFRFLQNRTRVQIWLYENT MRIEG+I GFDEYMNLVLDEAEEVD+K + R Q+GRI+LKGDTITLMQ V+
Sbjct:    1 MSGYGGRGGPPVGGQRMKKVMTQPISLIFRFLQNRTRVQIWLYENTTMRIEGRISGFDEYMNLVLDEAEEVDLKKNVRTQVGRILLKGDTITLMQGVD 98          
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A6U0Y1E1_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0Y1E1_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.940e-40
Identity = 68/95 (71.58%), Postives = 80/95 (84.21%), Query Frame = 0
Query:    1 MSGFGGGRGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVE 95
            MSG+G G GG  RVKKVMTQPI+LIFRFLQNRTR+ IWLYEN+   IEG+I+GFDEYMNLVLD+A+E+D K + R  LGRI+LKGDTITLMQ  +
Sbjct:    1 MSGYGPG-GGSTRVKKVMTQPINLIFRFLQNRTRILIWLYENSNTMIEGRIVGFDEYMNLVLDDAQEIDQKQETRTDLGRILLKGDTITLMQEAQ 94          
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: R1EMN3_EMIHU (Small nuclear ribonucleoprotein E n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EMN3_EMIHU)

HSP 1 Score: 132 bits (333), Expect = 1.430e-38
Identity = 63/83 (75.90%), Postives = 77/83 (92.77%), Query Frame = 0
Query:   13 RVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVE 95
            +V+K+MTQPI+LIFRFLQN+TRVQIWLYENT++RIEG+I+GFDEYMNLVLDEAEE+ MK  ERK LGRI+LKGD+ITLM + +
Sbjct:    4 KVQKIMTQPINLIFRFLQNKTRVQIWLYENTELRIEGKIIGFDEYMNLVLDEAEELLMKKKERKPLGRILLKGDSITLMMTAQ 86          
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A6P8W5V7_GYMAC (Small nuclear ribonucleoprotein E n=6 Tax=Clupeocephala TaxID=186625 RepID=A0A6P8W5V7_GYMAC)

HSP 1 Score: 132 bits (332), Expect = 2.290e-38
Identity = 65/89 (73.03%), Postives = 76/89 (85.39%), Query Frame = 0
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVEV 96
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV V
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSVTV 92          
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: Q6AZK6_XENTR (Small nuclear ribonucleoprotein E n=2 Tax=Tetrapoda TaxID=32523 RepID=Q6AZK6_XENTR)

HSP 1 Score: 132 bits (331), Expect = 3.250e-38
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+ +K+  RKQLGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 90          
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A821IDN7_9NEOB (Small nuclear ribonucleoprotein E n=5 Tax=Euteleostomi TaxID=117571 RepID=A0A821IDN7_9NEOB)

HSP 1 Score: 132 bits (331), Expect = 3.250e-38
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+ +K+  RKQLGRIMLKGD ITL+QSV
Sbjct:    4 RGQGPKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 90          
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: Q6GPZ6_XENLA (Small nuclear ribonucleoprotein E n=1 Tax=Xenopus laevis TaxID=8355 RepID=Q6GPZ6_XENLA)

HSP 1 Score: 131 bits (330), Expect = 4.620e-38
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            RG G +V+KVM QPI+LIFR+LQNR+RVQ+WLYE   MRIEG I+GFDEYMN+VLD+AEE+ +K+  RKQLGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRVQVWLYEQVNMRIEGCIIGFDEYMNIVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 90          
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A669EMR4_ORENI (Small nuclear ribonucleoprotein E n=31 Tax=Clupeocephala TaxID=186625 RepID=A0A669EMR4_ORENI)

HSP 1 Score: 131 bits (329), Expect = 6.560e-38
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 0
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 90          
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Match: A0A553MW39_9TELE (Small nuclear ribonucleoprotein E n=2 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A553MW39_9TELE)

HSP 1 Score: 131 bits (329), Expect = 6.560e-38
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 0
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 90          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15036.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI2.310e-5796.91Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A835YX06_9STRA2.750e-4579.59Small nuclear ribonucleoprotein E n=1 Tax=Tribonem... [more]
A0A6U0Y1E1_9STRA3.940e-4071.58Small nuclear ribonucleoprotein E n=1 Tax=Rhizochr... [more]
R1EMN3_EMIHU1.430e-3875.90Small nuclear ribonucleoprotein E n=1 Tax=Emiliani... [more]
A0A6P8W5V7_GYMAC2.290e-3873.03Small nuclear ribonucleoprotein E n=6 Tax=Clupeoce... [more]
Q6AZK6_XENTR3.250e-3872.41Small nuclear ribonucleoprotein E n=2 Tax=Tetrapod... [more]
A0A821IDN7_9NEOB3.250e-3872.41Small nuclear ribonucleoprotein E n=5 Tax=Euteleos... [more]
Q6GPZ6_XENLA4.620e-3872.41Small nuclear ribonucleoprotein E n=1 Tax=Xenopus ... [more]
A0A669EMR4_ORENI6.560e-3873.56Small nuclear ribonucleoprotein E n=31 Tax=Clupeoc... [more]
A0A553MW39_9TELE6.560e-3873.56Small nuclear ribonucleoprotein E n=2 Tax=Osteoglo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 27..93
e-value: 7.9E-18
score: 75.2
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 27..92
e-value: 7.0E-17
score: 60.9
NoneNo IPR availableGENE3D2.30.30.100coord: 7..95
e-value: 2.8E-40
score: 138.1
NoneNo IPR availablePANTHERPTHR11193:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 13..95
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 13..95
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 20..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:628275..630150 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15036.1mRNA_C-linearis_contig74.15036.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig74 627671..630494 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig74.15036.1 ID=prot_C-linearis_contig74.15036.1|Name=mRNA_C-linearis_contig74.15036.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
MSGFGGGRGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQ
ILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSVEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027078snRNP-E
IPR010920LSM_dom_sf