mRNA_C-linearis_contig74.15015.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig74.15015.1
Unique Name	mRNA_C-linearis_contig74.15015.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot
Match: D8LD63_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD63_ECTSI)

HSP 1 Score: 597 bits (1539), Expect = 9.260e-211
Identity = 320/387 (82.69%), Postives = 343/387 (88.63%), Query Frame = 1

Query:    1 DAELLRSLRREIGAPSRPANANRGGANSXXXXXXXXXXXXXXXXXXXXXXXXVGSSA---------GGVSDLSSIGLLRDAEEGRGGQDDVD----GYDGEDEDRNLDGQEYGFIMFDPVWGKPDYPPGHHTTKCQLCGVLCCPCLMGRDGWRGARNRNVWRRIRKRAAVIISAVDIATFVLSIIYNGGFQSMWGKRDSNPLLGPSPETLVHLGAKHLTLIQEGQVWRLLTPVLLHGGLLHIVMNLSSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPEKVGVGASGAIYAIMGGWLSHVICTWHEEDEFAKGAQLTQVVGYTIIGMAASLAPIVDWAAHFGGLITGIVVGWALFHKPTEDARMLREPLRIKLRRLQGKI 1122
            DAELLRSLRREIGAP+RPA A+RG   SXXXXXXXXXXXXXXXXXXXXXXXX              GGV +LSS+GLLRDAEEGRGG  D D    GYD + ED+N+DGQEYGF+MFDPVWGKPDYPPGHHTTKCQ CGVLCCPCLMGRDGWRG+RNRNVWRRIRKRAA+I S VDI  FVLSII NGGFQSMWGK DSNPLLGPS ETL+ LGAKHLTLIQEGQVWRLLTP+LLHGG+LHI MNL+SQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASP+KVGVGASGAIYAIMG WLSHV+CTW+EEDEFAKGAQLTQVV YT++GMAASLAPIVDWAAH GGL+TGI+VGWALFHKP ED+RMLREPLR +L RLQGKI
Sbjct:    5 DAELLRSLRREIGAPTRPAAASRGAGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVHNLSSMGLLRDAEEGRGGDRDADNSGGGYDDDWEDQNMDGQEYGFVMFDPVWGKPDYPPGHHTTKCQFCGVLCCPCLMGRDGWRGSRNRNVWRRIRKRAAIITSGVDIVAFVLSIIINGGFQSMWGKVDSNPLLGPSIETLMALGAKHLTLIQEGQVWRLLTPILLHGGVLHIFMNLTSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPDKVGVGASGAIYAIMGAWLSHVLCTWNEEDEFAKGAQLTQVVLYTMVGMAASLAPIVDWAAHVGGLVTGILVGWALFHKPVEDSRMLREPLRRRLSRLQGKI 391

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BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot
Match: A0A7S2R6S9_9STRA (Rhomboid-like protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6S9_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.140e-45
Identity = 101/271 (37.27%), Postives = 147/271 (54.24%), Query Frame = 1

Query:  283 DGQEYGFIMFDPVWGKPDYPPGHHTTKCQLCGVLCCPCL-MGR------DGWRGARNRNVWRRIR--KRAAVIISAVDIATFVLSIIYNGGFQSMWGKRDSNPLLGPSPETLVHLGAKHLTLIQ-EGQVWRLLTPVLLHGGLLHIVMNLSSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPEKVGVGASGAIYAIMGGWLSHVICTWH---EEDEFAKGAQLTQVVGYTIIGMAASLAPIVDWAAHFGGLITGIVVGWALF-HK 1053
            D QE    + DPVWGK +  PG   +  Q+     CPCL +GR       G+         R +R     +V+++ V +A   ++I  + G        + NP++GP    L  LGAK+  LI    Q WRL TP+LLH G +H+ +N+  Q R+G  LE +WG   + I+Y   G    +LSC+A P+ +GVG+SGAI  I+G WL+ ++C W    EE+   + A L  V    +I ++ SL P+VDWAAH GGL+ G ++G  LF HK
Sbjct:  101 DAQEETLTLEDPVWGKLELAPGQRPSPTQIICFSLCPCLCIGRCCVKTPGGFYSCHPEKGARCLRFVLTLSVLLALVQVAMLAIAIALSDGL----APTEQNPMVGPYATILDRLGAKNAALIAYRNQWWRLFTPMLLHAGFIHLAVNVLIQVRIGVILEYQWGIAIYTIIYITSGFLSAILSCIALPDSLGVGSSGAIMGILGAWLAEIVCAWSSTPEEELGQRSANLVLVFLNILITLSFSLVPLVDWAAHIGGLLAGWMMGVVLFGHK 367

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BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot
Match: A0A7S2AL17_9DINO (Rhomboid-like protease (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AL17_9DINO)

HSP 1 Score: 164 bits (415), Expect = 3.360e-43
Identity = 98/297 (33.00%), Postives = 155/297 (52.19%), Query Frame = 1

Query:  307 MFDPVWGKPDYPPGHHTTKCQLCGVLCCPC-LMGRDGWRGARNRNVWRRIRKRAAVIISAVDIATFVLSIIYNGGFQSMWGKRDSNPLLGPSPETLVHLGAKHLTLIQ-EGQVWRLLTPVLLHGGLLHIVMNLSSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPEKVGVGASGAIYAIMGGWLSHVICTWHEE---DEFAKGAQLTQVVGYTIIGMAASLAPIVDWAAHFGGLITGIVVGWALFHKPTEDARMLREPLRIKLRRLQGKICAWTVVVAFVVMAYWTFAVA 1182
            ++DP+WG+     G     CQ     CCPC +MG     G + R  W++     +  +  + +   V+++   GG  ++    + NP++GP    L  LGAK+   I+   + WR+L+P+LLH G LH+V NLS Q R G  LE  WG  +WL VY   G  G L  C+ SP+ +GVG+SGA+  ++G W S ++ TW++    D   + AQ   VV   ++ +  S  P++D+AAH GGL+ G  V  A+F      A  L+  L  ++ R+ G           +++  W+FA+A
Sbjct:   27 LWDPLWGEIILAEGGRKRACQHFTFACCPCAMMG----CGGQARRFWQKFLLSWSFGLGLLQVIMMVVAVALYGGHDAV----ERNPMIGPHYHVLDKLGAKNAARIRWNWEWWRILSPMLLHAGWLHLVGNLSVQLRTGAMLEAAWGGASWLCVYVTSGAFGALAGCLMSPQHLGVGSSGALCGLLGAWASFILITWNQTSPVDIKLRNAQSFSVVLSMLVIIGLSFLPLMDFAAHVGGLLMGAAVAMAIF------ASRLQSLLWSRVTRVAG---------IALLLVLWSFALA 300

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BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot
Match: A0A7S1FIW9_NOCSC (Rhomboid-like protease n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FIW9_NOCSC)

HSP 1 Score: 155 bits (391), Expect = 1.680e-38
Identity = 88/256 (34.38%), Postives = 129/256 (50.39%), Query Frame = 1

Query:  307 MFDPVWGKPDYPPGHHTTKCQLCGVLCCPCLMGRDGWRGAR-----NRNVWRRIRKRAAVIISAVDIATFVLSIIYNGGFQSMWGKRDSNPLLGPSPETLVHLGAKHLTLIQEGQVW-RLLTPVLLHGGLLHIVMNLSSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPEKVGVGASGAIYAIMGGWLSHVICTWHE---EDEFAKGAQLTQVVGYTIIGMAASLAPIVDWAAHFGGLITGIVVGWALF 1047
            ++DP+WG          +       + CP +M   G   +R      +  W+R     + ++S +     V  I  +GG          NP++GP        GAK+   I+    W RLL+ V+LH G +HIV NL  Q R+G  LE  WG   WL++YWV G  G ++S V  P  +GVGASGAI  I+G W   ++CTW++    D+  + +Q   VV   +  +A S  P+VDWAAH GG+I G+ +G  LF
Sbjct:  128 LWDPIWGDMTLKNEDEVSWNVRVLYIMCPMIMVGFGLGQSRLVHVDKKAAWKRCFLSWSFVLSVLQTGCLVAQITVDGGIVPF----KENPMVGPGWAIFDEWGAKNAAKIKYNHEWYRLLSAVMLHAGWIHIVSNLMVQLRLGIMLEVLWGHTCWLVIYWVSGAYGTMVSSVMMPNTLGVGASGAICGIVGAWSVFIVCTWNQTLPRDKMTRNSQFMAVVWSLVALVALSFIPMVDWAAHIGGVIMGMGLGAFLF 379

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BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot
Match: A0A6U0S1P1_9STRA (Rhomboid-like protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0S1P1_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.380e-37
Identity = 73/172 (42.44%), Postives = 106/172 (61.63%), Query Frame = 1

Query:  559 NPLLGPSPETLVHLGAKH-LTLIQEGQVWRLLTPVLLHGGLLHIVMNLSSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPEKVGVGASGAIYAIMGGWLSHVICTWHEEDEF--------AKGAQLTQVVGYTIIGMAASLAPIVDWAAHFGGLITGIVVGWALF 1047
            NP++GP P+ + + GAK+ L ++ +G+ WRLLTPVLLH G+LH++ N+  Q+ +G F E+ WG+  WLIVY   G+G ++LS    P+ + VG+SGAI  + G  LS +   W+E  E          +  QL  V G  ++ M  S  P VDWAAH GGL++GI VG  +F
Sbjct:   97 NPMIGPYPDVMSYWGAKNALKILDDGENWRLLTPVLLHAGILHLIGNVHVQWDLGVFFEKEWGSAAWLIVYLTSGVGSSILSVYCMPDNISVGSSGAIMGLFGAKLSEIFVKWYEPRETILEKVGHAVRKEQLCMVSGGVVLVMLLSFIPYVDWAAHLGGLLSGIAVGMVVF 268

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BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot
Match: A0A812VT23_9DINO (Rhomboid-like protease n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812VT23_9DINO)

HSP 1 Score: 151 bits (381), Expect = 1.820e-37
Identity = 85/264 (32.20%), Postives = 135/264 (51.14%), Query Frame = 1

Query:  301 FIMFDPVWGKPDYPPGHHTTKCQLCGV----LCCPCLMGRDGWRGARNRNVWRRIRKRAAVIISAVDIATFVLSIIYNGGFQSMWGKRDSNPLLGPSPETLVHLGAKHLT-LIQEGQVWRLLTPVLLHGGLLHIVMNLSSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPEKVGVGASGAIYAIMGGWLSHVICTWHE---EDEFAKGAQLTQVVGYTIIGMAASLAPIVDWAAHFGGLITGIVVGWALFHKPTEDA 1068
            + + DP+WG+        TT+           CCPC +   G      +  W +     ++I++ + +A  V  I  +GG  S     + NP+LGP    L   G K+   ++ +G+ WRL +  +LH G +H+  NL  Q   G  LE  WG   WL+VY+V G+  NLLSCV  P+ +GVG+SG +  ++GGWLS +  TW++    D   + AQ+T +V   ++ +  S  P++D+AAH GGL+ G      +F    + A
Sbjct:   88 YSVVDPLWGEVT------TTEAPSAWFRLLFCCCPCCI--VGCSTKEAKRAWVKFLCSCSLILAVLQVAILVAVIAVDGGMVSY----EENPMLGPKFNRLDEAGGKNAAKILLQGEWWRLASATMLHAGWIHLAGNLVVQLHAGIQLEVIWGPTAWLVVYFVSGIYANLLSCVLHPDTIGVGSSGCLCGLIGGWLSFIFITWNQTLPSDIKMRNAQVTSIVLSILMVLVFSFLPLMDFAAHVGGLLMGTGTSMVMFGSRLQHA 339

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BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot
Match: A0A813K155_POLGL (Rhomboid-like protease n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K155_POLGL)

HSP 1 Score: 147 bits (371), Expect = 5.970e-36
Identity = 99/305 (32.46%), Postives = 144/305 (47.21%), Query Frame = 1

Query:  301 FIMFDPVWGKPDYPPGHHTTKCQLCGVLCCPCLMGR----DGWRGARNRNVWRRIRKRAAVIISAVDIATFVLSIIYNGGFQSMWGKRDSNPLLGPSPETLVHLGAKHLTLIQE-GQVWRLLTPVLLHGGLLHIVMNLSSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPEKVGVGASGAIYAIMGGWLSHVICTWHEE---DEFAKGAQLTQVVGYTIIGMAASLAPIVDWAAHFGGLITGIVVGWALFHKPTEDARMLREPLRIKLRRLQGKICAWTVVVAFVVMAYWTFAVATCT 1191
            F ++DP+WG            C    + CCPC+       DG+R       WR      A ++    +         +GG   +    + NP++GP    L   GAK+   I+   + WRLL+ V+LH G LH+  NL  Q R G  LE  +G   WL++Y + G    L SCV +P K+GVG+SGA+  ++G WLS ++ TW++    D  A+  Q   V    II +A+S  P++D+AAH GGLI GI +   LF       R+   P R   R     I  + +  AF+    W F   T T
Sbjct:  101 FQIWDPLWGDIKLTSSEAPGFCTRLLLNCCPCVFVSCRTDDGFRA------WRSFLLSWACLLGFAQVIXXXXXXXLSGGHMPL----EENPMIGPHYHALDPAGAKNAARIKVFDEWWRLLSAVMLHAGWLHLAGNLIIQLRTGAMLEVLFGHSAWLLIYIISGAYSELCSCVINPSKLGVGSSGALCGLVGAWLSFILITWNQTLPLDVKARNVQAFSVGFSIIIIVASSFLPLMDFAAHIGGLIMGISLAMVLF-----AGRLQHMPSRWATR-----IAGFCLGSAFLGFTVWWFVTQTET 385

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BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot
Match: A0A812XH88_9DINO (Rhomboid-like protease n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812XH88_9DINO)

HSP 1 Score: 149 bits (377), Expect = 2.550e-35
Identity = 84/257 (32.68%), Postives = 131/257 (50.97%), Query Frame = 1

Query:  301 FIMFDPVWGKPDYPPGHHTTKCQLCGV----LCCPCLMGRDGWRGARNRNVWRRIRKRAAVIISAVDIATFVLSIIYNGGFQSMWGKRDSNPLLGPSPETLVHLGAKHLT-LIQEGQVWRLLTPVLLHGGLLHIVMNLSSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPEKVGVGASGAIYAIMGGWLSHVICTWHE---EDEFAKGAQLTQVVGYTIIGMAASLAPIVDWAAHFGGLITGIVVGWALF 1047
            + + DP+WG+        TT+           CCPC +   G      +  W +     + I++ + +A  V  I  +GG  S     + NP+LGP    L   G K+   ++ +G  WRL +  +LH G +H+  NL  Q   G  LE  WG   WL+VY+V G+  NLLSCV  P+ +GVG+SG +  ++GGWLS +  TW++    D   + AQ+T +V   ++ +  S  P++D+AAH GGL+ G      +F
Sbjct:  356 YSVVDPLWGEVT------TTEAPSAWFRLLFCCCPCCV--VGCSTKEAKRAWVKFLCSCSFILAVLQVAILVAVIAVDGGMVSY----EENPMLGPKFNRLDEAGGKNAAKILLQGDWWRLASATMLHAGWIHLAGNLVVQLHAGVQLEVIWGPTAWLVVYFVSGIYANLLSCVLHPDTIGVGSSGCLCGLIGGWLSFIFITWNQTLPSDIKMRNAQVTSIVLSILMVLVFSFLPLMDFAAHVGGLLMGTGTSMVMF 600

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BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot
Match: A0A7S2THN5_9EUKA (Rhomboid-like protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2THN5_9EUKA)

HSP 1 Score: 143 bits (360), Expect = 4.290e-35
Identity = 76/200 (38.00%), Postives = 118/200 (59.00%), Query Frame = 1

Query:  472 IISAVDIATFVLSII-----YNGGFQSMWGKRDSNPLLGPSPETLVHLGAKHLTLIQEGQVWRLLTPVLLHGGLLHIVMNLSSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPEKVGVGASGAIYAIMGGWLSHVICTWHEEDEFAKGAQLTQVVGYTII----GMAASLAPIVDWAAHFGGLITGIVVGWAL 1044
            IISA+ +   ++ +I     ++G F         N + GP P+T  ++GAK+L  IQEGQV+R +TP++LHGG+LH+  NL  Q R+G   E RWG  N+++ Y + G+G +  SC+ SP  + VGASGA++ ++G  +S++I  W       K  +L  V+   II    GM       +D +AHFGGL+ G ++G+AL
Sbjct:   86 IISAIQVIMLIVCLIVGATKFDGAFVK------GNDMGGPGPQTFKYMGAKYLPCIQEGQVYRFVTPIVLHGGILHLASNLFFQCRVGFIFELRWGLANYILTYVLTGIGASYFSCLMSPNSISVGASGALFGLIGADISYLIMNWQYLPGSEKYQELCIVICILIINFLFGMTGGGEGSIDNSAHFGGLVFGFLIGFAL 279

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BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot
Match: D2VPF7_NAEGR (Rhomboid-like protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VPF7_NAEGR)

HSP 1 Score: 145 bits (365), Expect = 6.700e-35
Identity = 88/237 (37.13%), Postives = 128/237 (54.01%), Query Frame = 1

Query:  340 PPGHHTTKCQLCGVLCCPCLMGRDGWRGARNRNVWRRIRKRAAVIISAVDIATFVLSIIYNGGFQSMWGKRDSNPLLGPSPETLVHLGAKHLTLIQ-EGQVWRLLTPVLLHGGLLHIVMNLSSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPEKVGVGASGAIYAIMGGWLSHVICTWHEEDEFAKGAQLTQVVGYTIIGMAASLAPIVDWAAHFGGLITGIVVGWALF 1047
            P  +HT  C +C   CCPC +G         +  ++ + K     IS V I  F++ +       S+ G   SNP +GPS  TL+ LGAK    I+ E Q+WRL TP+++H G LH+ MNL  Q  +    E+ W     L +Y + G+GGNLLSCVA P+ V VGASGAI  ++G  ++++I  W +     K  Q   V    +I +  S +  VD+A H GGL+ G ++G+A F
Sbjct:  161 PQWYHT--CLMC---CCPCFVGPPC--SPTRKQDYKNMLKTFCFWISIVQIIYFIVEV-------SVGGIDSSNPSIGPSSSTLLLLGAKSAYKIKKEYQLWRLFTPLIMHAGFLHLFMNLFVQVMICMGYEKTWKWYRVLPIYIIAGVGGNLLSCVALPDSVSVGASGAIMGLIGAKVANIIIRWKKIPTQPKIMQCISVGFIIVITLLWSFSDYVDYAGHLGGLMCGFIIGFACF 383

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot

BLAST of mRNA_C-linearis_contig74.15015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LD63_ECTSI	9.260e-211	82.69	Rhomboid-like protein n=1 Tax=Ectocarpus siliculos...	[more]
A0A7S2R6S9_9STRA	1.140e-45	37.27	Rhomboid-like protein n=1 Tax=Rhizochromulina mari...	[more]
A0A7S2AL17_9DINO	3.360e-43	33.00	Rhomboid-like protease (Fragment) n=1 Tax=Alexandr...	[more]
A0A7S1FIW9_NOCSC	1.680e-38	34.38	Rhomboid-like protease n=1 Tax=Noctiluca scintilla...	[more]
A0A6U0S1P1_9STRA	1.380e-37	42.44	Rhomboid-like protein n=1 Tax=Eucampia antarctica ...	[more]
A0A812VT23_9DINO	1.820e-37	32.20	Rhomboid-like protease n=2 Tax=unclassified Symbio...	[more]
A0A813K155_POLGL	5.970e-36	32.46	Rhomboid-like protease n=1 Tax=Polarella glacialis...	[more]
A0A812XH88_9DINO	2.550e-35	32.68	Rhomboid-like protease n=1 Tax=Symbiodinium sp. KB...	[more]
A0A7S2THN5_9EUKA	4.290e-35	38.00	Rhomboid-like protein n=1 Tax=Lotharella oceanica ...	[more]
D2VPF7_NAEGR	6.700e-35	37.13	Rhomboid-like protein n=1 Tax=Naegleria gruberi Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig74	contig	C-linearis_contig74:470298..475751 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	582.0
Seed ortholog evalue	1.9e-163
Seed eggNOG ortholog	2880.D8LD63
Preferred name	ROM1
Hectar predicted targeting category	other localisation
EggNOG free text desc.	serine-type endopeptidase activity
EggNOG OGs	COG0705@1,KOG2289@2759
Ec32 ortholog description	Peptidase S54, rhomboid
Ec32 ortholog	Ec-11_000620.1
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	10
Model size	1475
Cds size	1107
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig74.15015.1	prot_C-linearis_contig74.15015.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig74 470513..475598 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930413.018364-UTR-C-linearis_contig74:470297..470512	1622930413.018364-UTR-C-linearis_contig74:470297..470512	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig74 470298..470512 -
1690881056.8982632-UTR-C-linearis_contig74:470297..470512	1690881056.8982632-UTR-C-linearis_contig74:470297..470512	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig74 470298..470512 -
1622930413.3063264-UTR-C-linearis_contig74:475598..475751	1622930413.3063264-UTR-C-linearis_contig74:475598..475751	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig74 475599..475751 -
1690881057.0050793-UTR-C-linearis_contig74:475598..475751	1690881057.0050793-UTR-C-linearis_contig74:475598..475751	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig74 475599..475751 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig74:470298..475751-
coding sequence from alignment at C-linearis_contig74:470298..475751-

protein sequence of mRNA_C-linearis_contig74.15015.1

>prot_C-linearis_contig74.15015.1 ID=prot_C-linearis_contig74.15015.1|Name=mRNA_C-linearis_contig74.15015.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=369bp
MVGSSAGGVSDLSSIGLLRDAEEGRGGQDDVDGYDGEDEDRNLDGQEYGF
IMFDPVWGKPDYPPGHHTTKCQLCGVLCCPCLMGRDGWRGARNRNVWRRI
RKRAAVIISAVDIATFVLSIIYNGGFQSMWGKRDSNPLLGPSPETLVHLG
AKHLTLIQEGQVWRLLTPVLLHGGLLHIVMNLSSQFRMGTFLEERWGTRN
WLIVYWVGGLGGNLLSCVASPEKVGVGASGAIYAIMGGWLSHVICTWHEE
DEFAKGAQLTQVVGYTIIGMAASLAPIVDWAAHFGGLITGIVVGWALFHK
PTEDARMLREPLRIKLRRLQGKICAWTVVVAFVVMAYWTFAVATCTIPVP
GRLPPRMPVFTQPHQPHL*

mRNA from alignment at C-linearis_contig74:470298..475751-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig74.15015.1 ID=mRNA_C-linearis_contig74.15015.1|Name=mRNA_C-linearis_contig74.15015.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5454bp|location=Sequence derived from alignment at C-linearis_contig74:470298..475751- (Chordaria linearis ClinC8C monoicous)
GACGCCGAGCTCCTCCGTTCTCTTCGGCGAGAGATTGGAGCCCCCTCTCG
ACCTGCCAACGCCAACAGAGGCGGTGCCAATAGTGGCGGCGGCGGCGGAA
GCAGCAGCGGGGGGGGTTATGGGGGAGGGGGAGGGGGCGGCGCCTCTCGT
CGCATGGTCGGCAGCTCGGCGGGCGGAGTTAGCGACTTGTCTTCCATCGG
TCTCTTGAGAGGTACGTGTGTATCTGATAGCATAGGTTGCTGCTTGGTTT
GGCAGCAGCAAAGGTTTGCTTCTGGTTGGATTTCGAAGGGGCTCACCTCT
TGGCGATAGAAAATCGATGGGAAAGTCTTGCCACTTCAAGACACTCGAGT
ATACACACGAAGCTTTTGCGCGTATCTGTGAGTAAGCTCATGCTCAAACG
TTTTACCCACAGCCTTGAGCTAAAGTTTGCACTGGTGCCGAGTCAATTTG
GCCGCTCTTGGCTGGCTTTGTCGCACCTGCGACCGACGACCTTTTCAGGC
ACGAACAGAACCATGACATGGGACTACAGAGGCCTGGTGAGTAGCTCTTC
AATGTTCTGCGATCGGTCTGTCCGATGATATTCATTTTGTACTTTCCTCG
GGCCTGGGCACACCCTTCACCGCACCTCACCGCACCGCACAACCTACCAT
CCATTCCTCACGCCGAAAGAAACAAGAAAAACGTTAGTTGTTTTCGTGGT
TTGGTTTCTTTGTTCGCGTGTGTCTCAGATGCTGAAGAAGGGAGGGGCGG
GCAAGACGACGTTGATGGTTACGACGGGGAGGACGAGGACAGGAACTTGG
ACGGACAGGAGTACGGGTTCATTATGTTCGACCCGGTATGGGGCAAGCCC
GACTACCCGCCGGGACACCACACCACCAAGTGTCAGGTGAGCTTGGCTTT
CTATTTCGGCCTTGTTGACCGGCCTCATCGGTGGCGAGTGTTATGTCTAA
GTAGAGCGGACACGCTGGGTTTGGGTTTAGCGAGTGTCGTGTACATGCCT
TGTTTTTGCCGGTGCCTCGCGTCCGCTTAGTCCTCACTCTGCTGGAAAAC
GAACCAGGCGCCTTTCTTCGTGAACCCCTGGCCGTTTCCCCCCAAGAGTT
ACACAAGCCTTCCAACCTGCTAACGTGAGGCGCGTGCGATCGCCCAATTC
ACGCCGTCTTGCAGTTGTGCGGCGTGCTGTGCTGCCCGTGCCTCATGGGC
AGGGACGGCTGGCGAGGGGCGCGGAACCGCAACGTCTGGAGGAGGATTCG
CAAGCGCGCGGCGGTCATCATCTCCGCCGTTGACATCGCCACCTTCGTGC
TGTCCATCATTTACAACGGGGGTTTCCAGGTGAGACAAAACGGGTTTTAT
GTTAAGCCCCTCAAGCATGACAATACCGCATGGCCAGAGATGCGTGCACC
CCCGCCCCGCACACCCAAACGCCGTCGTCTACATGCAAGACCGCGTCTTG
ACGTACGGGTGCGTGTCCGCTGGGTTGCTGCACTCGCTCCGGTGAAGGAA
AACTGTTTTCGGCGATCCTAGTTGGGATATTAAGGGGTCTCGAGTGCCCA
CCCACTCGGCCCCCTTCGTGTTCTGCGTTGTTTGCCTTGTCCACTCATAC
ACATCACCCCTCTTTCGCCTTGCTCCGCGAACCTGTTTGTGTTCACTTTC
ATGTGGCTGGGCCCCTTCTTGGCAACGCGGATCGTGGGTTCTAATGCGTG
TGGCATGTCGCGTGGGAATCGGATCTCGTGGAACCTGCACGCACCGTTTG
CATGAATGCCTACGTATCTCTGGAACACCACCAAATCGTGGCAGTCGATG
TGGGGAAAGAGAGACTCGAACCCCCTGCTGGGACCATCCCCAGAGGTACG
GAAGCAAGCACGACGTGGTAGAGCTTATTTCGGTGTGTAGCAGGACGATC
AGTCGTGAGCTGACCCAAGAGAGTCCAGTGGGCGGATATCTGATATCCCG
AGCAAAGCAATCAGTAGTCGGCAGGCACCATTTACCAGTGTGGGGAATGA
GAGGAGGAAGGGATGAACGGCACATTCCAAAAAGCCCTGGTGTGACTTAT
ATGGCACCACCACCATGCACCATGTCGTTGGTGGACGAGCACGGTGTATG
CAGATGAGATGAGATGAGATGAGATGAGATGAGATGTCTTGGAATATCCT
CCGACCGAAGCTTTAGAACACGATGAACTTTCCGCTGGCTGGAGCGGTCC
CGGTACTGCTGTCCTTTTGCATCTGCTGTCTTGATAGTGACGCGTGTGAT
CCACCACGAGGGGTGATATGTCTGAGTTGCTGCCGATTTTTTGTTGTTGA
TGTTGCTGTTCTTTTTGTGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGC
TTCTGCTGCTGCTGCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTT
CTGCTGGCGCCTCGTAGACGCTTGTGCATCTTGGCGCCAAGCACTTGACG
CTGATCCAGGAGGGACAGGTGTGGAGGCTGCTGACGCCAGTTCTGCTGCA
CGGCGGCTTGTTGCACATCGTCATGAACGTGAGTGCTGCATCATAGGTAT
GGTTGCACGGCGTATAGCGTTTCGAGGTCAGGTAATTGGCTTGGAGAAAA
CTCTGGCTGCAAAGTATGGCGCGGATTGCATAGTTTTTTACTGCGTTTGG
GGAACGCAGCTTTGCACCTTTTGATGATGTTAACTTGACGCCTTTTTTTC
AGGTAGTATACGACAGCAATGGCTCCCTCATAAGTCTGTTTAGAAGGGTG
TAGTTTCATCATATTGAACAAACCCCAGCCCGTATGTGTGTGAACAGCGG
CGATGTGGTCGGACCCTGGTATCCGCCGATCATAAGAGCAAGCTATAGAG
AACGGCTGGCAGTAAGCGCTTTAGGCTGTCGCCTTTGTAGCGAGCTGTTT
GTAGACACGCCCGTCCCGTCCCGTACCCGGCGTTGTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGCGAACTGAACCCCAGAGGCAGAGGGGGAGCAGGGCA
CTGCTTGCGCTCGCCTTTTCCCTAGCTGTAGAAGCGCGATTGGACTTGTT
GCCCAAGACGCTTGGTGTCCCGGGCTCTGCTAGATGTACATGGCTGATTA
TCGAGTCGATGAATACCTGGTACAAGGACACCACCTATGCGGCCTTTGGA
AACTGCGTTGAAACTGCGTTGAAACTGCGTTGAAACTGCATCTGAGATTC
GTTTGTCCCTCCTCCTCCTCCTGCCTGCCTTTTGGTGAATGCACCCAACG
TGTGAATACCCTCCACAGCTTTCCTCTCAGTTTCGGATGGGCACGTTTCT
GGAGGAGAGATGGGGCACGAGAAACTGGCTAATTGTCTACTGGGTGGGGG
GGCTGGGCGGGAATCTTCTCAGCTGCGTTGCAAGCCCGGAAAAGGTAAAA
CTCGCCTTGTTTTCTAGATTTTGTCTGTCCATCCCACCCATGCTCTGCTC
CAGTGCATGCTCATGCCGTACCGTAGCCGTCTCCCTTCTGACTCTTCGGT
ATGCAAGGGTGTTAAGTCGTGGGTCACACACTTTGTCACACTTTTCGTAC
GCGCCGGCGAGCCGCCGTCGGACGGTTGGTGAATTGCCTGTCACGATGTT
AACTGGTAGACGCTACAAGCAGCAGTGTTATTGTAGTCTTGGAGTTTTTT
TTGTCCCGTCTTGTCCGCGGCATTCAGCGGAAAATCGCTGCTGTTAAGGG
TGTGCTGTAGTCCAACGTCGCGACAACCGCAGCTGCAGCATACTCTCATA
CGCTCCTTGTGCCGTTTGAAAATGCCGCTGTTGGACGGGGGAGCAGGTGG
GCGTAGGCGCGTCTGGCGCGATCTACGCCATCATGGGGGGCTGGCTGTCC
CACGTGATCTGCACTTGGCATGAGGAGGACGAGTTCGCGAAGGGCGCACA
GCTCACTCAGGTGTGGGGTGCAGTCCACTGCTGGAACTTAGAACGCAAGT
GCGGGAGATAGCGCTGCTGTATGTAGGCTGTGAGTCTATTTGCTGATGGA
AGTTGAACAACTGATCTGCCTTGATCGTTTGCTGCCACGGTGCCCCCTAA
TGTCCTCTTGGCATCTATGCCTTAATGGACCCGCAGGTTGTGGGCTACAC
TATAATCGGAATGGCTGCTTCCCTGGCTCCTATCGTCGATTGGTGAGCTA
AATTTCCGATGACGGTTACGGTGACCCAGTGCGTCCACAGATGGATAGAT
AACTTGTTTCTTTTCGATTGCGCGACTCATAGCAGCTGTACATGAAGGGT
TTTACAACCCTCCAACCCGGCCTGGACGACTCACTCGCATCGCCTTTTGA
ATACGATCGTGGTGGGAATATGCAAGCTCTCGTTCGTCGCCCATGGTACA
TATATACTTGTATACATATTCGTGCATGAAATTCTAGTCGTGTAGGCGGG
TGTGACCCGAAGAATTTAGTCTGCACCAACAGACGTTTGTGAGGCAATAT
GGCACAGAGCAGTCGCTCGCGTGACGCGAAATACCGGACGTCGGCCGAAC
ACAACGATTCGATTCATTGTGCTCTCCGCCTGTTCTTGCCTTGTGGCCGT
GTGTGCTCAAATCAGGGCGGCGCACTTTGGCGGCCTCATCACCGGCATTG
TGGTCGGGTGGGCGCTTTTCCACAAGCCGACGGAGGACGCTCGGATGCTG
CGAGAGCCTCTGCGAATAAAGCTCCGTCGCCTTCAGGGGAAGAGTGAGTA
ACTGCCTACTATACGGTAGTAGGTCTGTCTCTTCTCTTCTCTCGCGATAG
TCTATGTCTGTTTGGTTCATGGATGCATGTGCGATGCATTTGCGACCTTT
TCCCTCTCCGTAGCCATCGAACGCCAACATGCCGCCTCTGGGCTGGAGCA
GCAGGGGTGGCTTCTGCTGTAGGCTGCTGTAGAAACGCGTCGTGGTTCCA
AAGCAATGAATAGGTTTCAAGTTTTCGTTGGCGCCGCGAGAACTACAGAG
ATAAGTTTAGAGCTATATTTCAGTACTGTATTCCTTGCCTATGACAATCA
AGCGCGATGTCACATTGCAACGAAGTTTTCTTCTTTTGCGGTGCTGCCTT
CTCCCCGGGCGCCCGCGCCTGTCTCTCCCGCTCTGTTCGCTGTTGGCAGT
CTGCGCGTGGACCGTGGTAGTTGCGTTTGTGGTCATGGCCTACTGGACCT
TCGCCGTGGCGACGTGCACGATACCGGTGCCCGGCCGCCTACCTCCTCGG
ATGCCCGTCTTCACGCAACCGCACCAGCCGCACTTGTGACTTTGCTTGGA
ATTCTTTTGAGCGGCAACCCTGTATATTCCTCTCGTTTCGAAGCTGAGTT
ACGTGGTGACGGACACCGGACATCTTGTTTGGTTTGGTTCGGGAATCTCA
GTCAACTTGCTTTTTGAAGTCGCGACGAAGACTTTAACCCTAAAGGGGCG
TAGGGTAACACCGGGATCGCACCTCCAGCAAGCACAGAGCAGGGGAGAGA
GGGG

Coding sequence (CDS) from alignment at C-linearis_contig74:470298..475751-

>mRNA_C-linearis_contig74.15015.1 ID=mRNA_C-linearis_contig74.15015.1|Name=mRNA_C-linearis_contig74.15015.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2214bp|location=Sequence derived from alignment at C-linearis_contig74:470298..475751- (Chordaria linearis ClinC8C monoicous)
ATGGTCGGCAGCTCGGCGGGCGGAGTTAGCGACTTGTCTTCCATCGGTCT
CTTGAGAGATGGTCGGCAGCTCGGCGGGCGGAGTTAGCGACTTGTCTTCC
ATCGGTCTCTTGAGAGATGCTGAAGAAGGGAGGGGCGGGCAAGACGACGT
TGATGGTTACGACGGGGAGGACGAGGACAGGAACTTGGACGGACAGGAGT
ACGGGTTCATTATGTTCGACCCGGTATGGGGCAAGCCCGACTACCCGCCG
GGACACCACACCACCAAGTGTCAGATGCTGAAGAAGGGAGGGGCGGGCAA
GACGACGTTGATGGTTACGACGGGGAGGACGAGGACAGGAACTTGGACGG
ACAGGAGTACGGGTTCATTATGTTCGACCCGGTATGGGGCAAGCCCGACT
ACCCGCCGGGACACCACACCACCAAGTGTCAGTTGTGCGGCGTGCTGTGC
TGCCCGTGCCTCATGGGCAGGGACGGCTGGCGAGGGGCGCGGAACCGCAA
CGTCTGGAGGAGGATTCGCAAGCGCGCGGCGGTCATCATCTCCGCCGTTG
ACATCGCCACCTTCGTGCTGTCCATCATTTACAACGGGGGTTTCCAGTTG
TGCGGCGTGCTGTGCTGCCCGTGCCTCATGGGCAGGGACGGCTGGCGAGG
GGCGCGGAACCGCAACGTCTGGAGGAGGATTCGCAAGCGCGCGGCGGTCA
TCATCTCCGCCGTTGACATCGCCACCTTCGTGCTGTCCATCATTTACAAC
GGGGGTTTCCAGTCGATGTGGGGAAAGAGAGACTCGAACCCCCTGCTGGG
ACCATCCCCAGAGTCGATGTGGGGAAAGAGAGACTCGAACCCCCTGCTGG
GACCATCCCCAGAGACGCTTGTGCATCTTGGCGCCAAGCACTTGACGCTG
ATCCAGGAGGGACAGGTGTGGAGGCTGCTGACGCCAGTTCTGCTGCACGG
CGGCTTGTTGCACATCGTCATGAACACGCTTGTGCATCTTGGCGCCAAGC
ACTTGACGCTGATCCAGGAGGGACAGGTGTGGAGGCTGCTGACGCCAGTT
CTGCTGCACGGCGGCTTGTTGCACATCGTCATGAACCTTTCCTCTCAGTT
TCGGATGGGCACGTTTCTGGAGGAGAGATGGGGCACGAGAAACTGGCTAA
TTGTCTACTGGGTGGGGGGGCTGGGCGGGAATCTTCTCAGCTGCGTTGCA
AGCCCGGAAAAGCTTTCCTCTCAGTTTCGGATGGGCACGTTTCTGGAGGA
GAGATGGGGCACGAGAAACTGGCTAATTGTCTACTGGGTGGGGGGGCTGG
GCGGGAATCTTCTCAGCTGCGTTGCAAGCCCGGAAAAGGTGGGCGTAGGC
GCGTCTGGCGCGATCTACGCCATCATGGGGGGCTGGCTGTCCCACGTGAT
CTGCACTTGGCATGAGGAGGACGAGTTCGCGAAGGGCGCACAGCTCACTC
AGGTGGGCGTAGGCGCGTCTGGCGCGATCTACGCCATCATGGGGGGCTGG
CTGTCCCACGTGATCTGCACTTGGCATGAGGAGGACGAGTTCGCGAAGGG
CGCACAGCTCACTCAGGTTGTGGGCTACACTATAATCGGAATGGCTGCTT
CCCTGGCTCCTATCGTCGATTGGTTGTGGGCTACACTATAATCGGAATGG
CTGCTTCCCTGGCTCCTATCGTCGATTGGGCGGCGCACTTTGGCGGCCTC
ATCACCGGCATTGTGGTCGGGTGGGCGCTTTTCCACAAGCCGACGGAGGA
CGCTCGGATGCTGCGAGAGCCTCTGCGAATAAAGCTCCGTCGCCTTCAGG
GGAAGAGGCGGCGCACTTTGGCGGCCTCATCACCGGCATTGTGGTCGGGT
GGGCGCTTTTCCACAAGCCGACGGAGGACGCTCGGATGCTGCGAGAGCCT
CTGCGAATAAAGCTCCGTCGCCTTCAGGGGAAGATCTGCGCGTGGACCGT
GGTAGTTGCGTTTGTGGTCATGGCCTACTGGACCTTCGCCGTGGCGACGT
GCACGATACCGGTGCCCGGCCGCCTACCTCCTCGGATGCCCGTCTTCACG
CAACCGCACCAGCCGCACTTGTGATCTGCGCGTGGACCGTGGTAGTTGCG
TTTGTGGTCATGGCCTACTGGACCTTCGCCGTGGCGACGTGCACGATACC
GGTGCCCGGCCGCCTACCTCCTCGGATGCCCGTCTTCACGCAACCGCACC
AGCCGCACTTGTGA