mRNA_C-linearis_contig74.15011.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15011.1
Unique NamemRNA_C-linearis_contig74.15011.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig74.15011.1 vs. uniprot
Match: A0A6H5JLK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.830e-31
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:    4 LGSDPASYCLKLSDMLTYISRHSLPSTAPSGLERLSEEPPRRFTVSQSRCTCGGELCSDVDMDGKLVTEAPLVVNVQVERRKCGTCGAWAWASDNWRQT 300
            L SD  S+C KL+DMLTY+ R +LP TAPSGL R+S  P RR  VSQ++CTCGGEL  + D++  LVTE        VERRKCGTCGA AWASDN R+T
Sbjct:  109 LDSDAESFCSKLADMLTYMRRLALPPTAPSGLARISVTPARRLVVSQTKCTCGGELLPEADVNATLVTE--------VERRKCGTCGACAWASDNLRKT 199
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BLAST of mRNA_C-linearis_contig74.15011.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.160e-30
Identity = 62/99 (62.63%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    4 LGSDPASYCLKLSDMLTYISRHSLPSTAPSGLERLSEEPPRRFTVSQSRCTCGGELCSDVDMDGKLVTEAPLVVNVQVERRKCGTCGAWAWASDNWRQT 300
            L SD  SYC KL+DMLTY+ R +LP TAPSGL RLSE P RR  VSQ++CTCGGEL  + D+   LV E        VERRKCG CGA AWASDNWR+T
Sbjct:  327 LDSDAESYCSKLADMLTYMRRLALPPTAPSGLARLSETPARRLMVSQTKCTCGGELLPEADVIATLVME--------VERRKCGACGACAWASDNWRKT 417
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BLAST of mRNA_C-linearis_contig74.15011.1 vs. uniprot
Match: D7G2H3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H3_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.040e-20
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    4 LGSDPASYCLKLSDMLTYISRHSLPSTAPSGLERLSEEPPRRFTVSQSRCTCGGELCSDVDMDGKLVTE 210
            L SD  SYC KL+DMLTY+ R +LP TAPSGL RLSE P RR  VSQ++CTCGGEL  + D++  LVTE
Sbjct:  171 LDSDAESYCSKLADMLTYMRRLALPPTAPSGLARLSETPARRLVVSQTKCTCGGELLPEADVNATLVTE 239
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BLAST of mRNA_C-linearis_contig74.15011.1 vs. uniprot
Match: D7FR86_ECTSI (Autophagy protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR86_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.190e-19
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    4 LGSDPASYCLKLSDMLTYISRHSLPSTAPSGLERLSEEPPRRFTVSQSRCTCGGELCSDVDMDGKLVTE 210
            L SD  SYC KL+DMLTY+ R +LP TAPSGL RLSE P RR  VSQ++CTCGGEL  + D++  LVTE
Sbjct:   66 LDSDAESYCSKLADMLTYMRRLALPPTAPSGLARLSETPARRLVVSQTKCTCGGELLPEADVNATLVTE 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JLK4_9PHAE1.830e-3160.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPP3_9PHAE1.160e-3062.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2H3_ECTSI1.040e-2063.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FR86_ECTSI1.190e-1963.77Autophagy protein 5 n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:421003..421602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue9.6e-17
Seed eggNOG ortholog2880.D7FR86
Preferred nameATG5
KEGG rclassRC00055,RC00523
KEGG koko:K01880,ko:K08339
KEGG ReactionR03654
KEGG Pathwayko00970,ko04136,ko04137,ko04138,ko04140,ko04211,ko04213,ko04216,ko04621,ko04622,ko05131,map00970,map04136,map04137,map04138,map04140,map04211,map04213,map04216,map04621,map04622,map05131
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0000423,GO:0001101,GO:0001775,GO:0001817,GO:0001974,GO:0002165,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002697,GO:0002700,GO:0002718,GO:0002739,GO:0002791,GO:0003008,GO:0003013,GO:0003015,GO:0003018,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006995,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007423,GO:0007507,GO:0007552,GO:0007568,GO:0008015,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009653,GO:0009791,GO:0009886,GO:0009888,GO:0009892,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010039,GO:0010040,GO:0010150,GO:0010522,GO:0010605,GO:0010623,GO:0010639,GO:0010941,GO:0010959,GO:0012501,GO:0012506,GO:0014706,GO:0015980,GO:0016020,GO:0016032,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0018410,GO:0019058,GO:0019079,GO:0019222,GO:0019538,GO:0019725,GO:0019882,GO:0019883,GO:0022411,GO:0022607,GO:0030097,GO:0030098,GO:0030100,GO:0030139,GO:0030154,GO:0030217,GO:0030234,GO:0030424,GO:0030435,GO:0030587,GO:0030659,GO:0030666,GO:0030670,GO:0031056,GO:0031057,GO:0031090,GO:0031288,GO:0031323,GO:0031324,GO:0031344,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032258,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033077,GO:0033365,GO:0033554,GO:0034045,GO:0034274,GO:0034613,GO:0034645,GO:0034727,GO:0034762,GO:0034765,GO:0035051,GO:0035065,GO:0035067,GO:0035069,GO:0035096,GO:0035150,GO:0035296,GO:0035973,GO:0036211,GO:0039689,GO:0039694,GO:0042110,GO:0042157,GO:0042158,GO:0042221,GO:0042311,GO:0042493,GO:0042592,GO:0042594,GO:0042692,GO:0042742,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043269,GO:0043383,GO:0043412,GO:0043562,GO:0043583,GO:0043687,GO:0043934,GO:0044042,GO:0044085,GO:0044087,GO:0044093,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044804,GO:0044805,GO:0045058,GO:0045060,GO:0045061,GO:0045321,GO:0045335,GO:0045806,GO:0046649,GO:0048366,GO:0048367,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048646,GO:0048707,GO:0048731,GO:0048738,GO:0048771,GO:0048827,GO:0048839,GO:0048840,GO:0048856,GO:0048869,GO:0050707,GO:0050708,GO:0050764,GO:0050765,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050832,GO:0050878,GO:0050880,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051051,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051279,GO:0051282,GO:0051409,GO:0051641,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0051924,GO:0055001,GO:0055002,GO:0055006,GO:0055007,GO:0055012,GO:0055013,GO:0055015,GO:0055114,GO:0060033,GO:0060047,GO:0060255,GO:0060341,GO:0060491,GO:0060537,GO:0060548,GO:0060627,GO:0061061,GO:0061709,GO:0061723,GO:0061726,GO:0061739,GO:0061912,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070255,GO:0070257,GO:0070727,GO:0070925,GO:0071496,GO:0071500,GO:0071704,GO:0071840,GO:0072359,GO:0072665,GO:0075044,GO:0075071,GO:0080090,GO:0090066,GO:0090087,GO:0090239,GO:0090241,GO:0090693,GO:0090702,GO:0097014,GO:0097458,GO:0097708,GO:0097746,GO:0097755,GO:0098542,GO:0098588,GO:0098772,GO:0098805,GO:0099120,GO:0099402,GO:0099568,GO:0120025,GO:0120032,GO:0120035,GO:0120038,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901983,GO:1901984,GO:1902017,GO:1902115,GO:1902275,GO:1902494,GO:1902617,GO:1903008,GO:1903169,GO:1903320,GO:1903321,GO:1903530,GO:1904062,GO:1905037,GO:1905268,GO:1990234,GO:2000377,GO:2000378,GO:2000618,GO:2000619,GO:2000756,GO:2000757,GO:2001251
EggNOG free text desc.process utilizing autophagic mechanism
EggNOG OGsKOG2976@1,KOG2976@2759
EC6.1.1.14
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131
Exons2
Model size302
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930412.8496594-CDS-C-linearis_contig74:421002..4212121622930412.8496594-CDS-C-linearis_contig74:421002..421212Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 421003..421212 +
1690881056.798892-CDS-C-linearis_contig74:421002..4212121690881056.798892-CDS-C-linearis_contig74:421002..421212Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 421003..421212 +
1622930412.8634157-CDS-C-linearis_contig74:421510..4216001622930412.8634157-CDS-C-linearis_contig74:421510..421600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 421511..421600 +
1690881056.8131442-CDS-C-linearis_contig74:421510..4216001690881056.8131442-CDS-C-linearis_contig74:421510..421600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 421511..421600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15011.1prot_C-linearis_contig74.15011.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 421003..421600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15011.1

>prot_C-linearis_contig74.15011.1 ID=prot_C-linearis_contig74.15011.1|Name=mRNA_C-linearis_contig74.15011.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
LLGSDPASYCLKLSDMLTYISRHSLPSTAPSGLERLSEEPPRRFTVSQSR
CTCGGELCSDVDMDGKLVTEAPLVVNVQVERRKCGTCGAWAWASDNWRQT
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mRNA from alignment at C-linearis_contig74:421003..421602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15011.1 ID=mRNA_C-linearis_contig74.15011.1|Name=mRNA_C-linearis_contig74.15011.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=600bp|location=Sequence derived from alignment at C-linearis_contig74:421003..421602+ (Chordaria linearis ClinC8C monoicous)
CTTCTCGGTAGCGATCCTGCTTCGTACTGCTTGAAATTGTCCGACATGCT
TACCTACATTTCGCGGCATTCTCTTCCATCGACCGCTCCGTCCGGACTTG
AGCGACTCTCCGAGGAACCGCCGAGAAGGTTCACCGTCTCTCAATCGAGG
TGCACCTGCGGGGGTGAGCTCTGTTCCGATGTCGACATGGATGGGAAGCT
TGTGACAGAGGTGAGTTGTGGGTTTTGTTGCTTGGTTTTCTCGGAAGTTG
CGTGATGGGGTGTCATAAGACCTCTCGCTTCACGCGTTGAACCTGAAATG
GTTGGTTCCGTATGCTTGATCTCGCAACCCTGAAACTGTACTGAGTGTGC
ATGCCCTGGCCATTGTTTTGTTCGTCATTGTACGTAAGCTGAGGGTGAAC
GGCTCGTGCTATTAAAAGTATACCCAGGACGCTCTCGTGTTTGAGGACTT
CGTGATGCCTCCCTGAACCTACCTTCTCACGGTCAACGGACCGCGTGATG
AATCGCAGGCGCCGCTAGTAGTGAACGTACAGGTAGAGCGCCGAAAGTGT
GGTACATGCGGAGCGTGGGCGTGGGCAAGCGACAACTGGCGACAGACGTC
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Coding sequence (CDS) from alignment at C-linearis_contig74:421003..421602+

>mRNA_C-linearis_contig74.15011.1 ID=mRNA_C-linearis_contig74.15011.1|Name=mRNA_C-linearis_contig74.15011.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at C-linearis_contig74:421003..421602+ (Chordaria linearis ClinC8C monoicous)
CTTCTCGGTAGCGATCCTGCTTCGTACTGCTTGAAATTGTCCGACATGCT
TACCTACATTTCGCGGCATTCTCTTCCATCGACCGCTCCGTCCGGACTTG
AGCGACTCTCCGAGGAACCGCCGAGAAGGTTCACCGTCTCTCAATCGAGG
TGCACCTGCGGGGGTGAGCTCTGTTCCGATGTCGACATGGATGGGAAGCT
TGTGACAGAGCTTCTCGGTAGCGATCCTGCTTCGTACTGCTTGAAATTGT
CCGACATGCTTACCTACATTTCGCGGCATTCTCTTCCATCGACCGCTCCG
TCCGGACTTGAGCGACTCTCCGAGGAACCGCCGAGAAGGTTCACCGTCTC
TCAATCGAGGTGCACCTGCGGGGGTGAGCTCTGTTCCGATGTCGACATGG
ATGGGAAGCTTGTGACAGAGGCGCCGCTAGTAGTGAACGTACAGGTAGAG
CGCCGAAAGTGTGGTACATGCGGAGCGTGGGCGTGGGCAAGCGACAACTG
GCGACAGACGGCGCCGCTAGTAGTGAACGTACAGGTAGAGCGCCGAAAGT
GTGGTACATGCGGAGCGTGGGCGTGGGCAAGCGACAACTGGCGACAGACG
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