mRNA_C-linearis_contig74.15058.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15058.1
Unique NamemRNA_C-linearis_contig74.15058.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:820955..821851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size898
Cds size528
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.4090846-UTR-C-linearis_contig74:820954..8213231622930407.4090846-UTR-C-linearis_contig74:820954..821323Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 820955..821323 +
1690881054.0254626-UTR-C-linearis_contig74:820954..8213231690881054.0254626-UTR-C-linearis_contig74:820954..821323Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 820955..821323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.423733-CDS-C-linearis_contig74:821323..8218511622930407.423733-CDS-C-linearis_contig74:821323..821851Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 821324..821851 +
1690881054.0360115-CDS-C-linearis_contig74:821323..8218511690881054.0360115-CDS-C-linearis_contig74:821323..821851Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 821324..821851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15058.1prot_C-linearis_contig74.15058.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 821324..821851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15058.1

>prot_C-linearis_contig74.15058.1 ID=prot_C-linearis_contig74.15058.1|Name=mRNA_C-linearis_contig74.15058.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=176bp
MSGGAALGEAVDAAQGRLVHPGAVARTRDRLPRAERRVIREKAGPLQPGP
GCGRDVVRIMWLRHAAKRAKREGTEGEKGRQSATRAAYRIRRPASPEGKT
GRAPADEKTGCRRELSCLLPLLPLLSLLPLLPLLPLLSSVATLALFGEWK
AGLYSSEYCTDSLVGIILGSVPLFSN
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mRNA from alignment at C-linearis_contig74:820955..821851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15058.1 ID=mRNA_C-linearis_contig74.15058.1|Name=mRNA_C-linearis_contig74.15058.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=897bp|location=Sequence derived from alignment at C-linearis_contig74:820955..821851+ (Chordaria linearis ClinC8C monoicous)
CGCAAGCCCCTCTGCGCTCGCCCGCCGCGCGCGCTTGGTGCCGACTCCCC
CAACCGACCCCATCTGCGAACCGCCGTCCTCGAACTCGCTCGCGTCCTCC
GGCGGGTGCTGCAGGCCGCAAAACGGGAAAATGGCGAAGCTGCTGGTGTG
TGTCAGACCACTATGGTCTGGGCATTTCCATAGGTATGCCGCCGACGTGT
CGAGGATCGCCTGGATCGCCAGCACACGCCGCACGCCGTCGGGCTTGCCC
TTCGTCGCCGCTCTGGTGTCCCCGAGAACGTCGGTCAGGTCCGGTCGCCC
CTCGAGCGGCTGACGCTGCATCGCCTCCGCGAGAGACGCGGCCAGGAGAG
GAACGTGGGCTTTGTTGAGATGTCCGGCGGTGCTGCCCTCGGGGAGGCAG
TCGACGCGGCTCAGGGTCGTCTCGTACACCCCGGCGCCGTTGCGCGCACC
CGCGATCGACTCCCACGTGCTGAACGCCGCGTCATCAGGGAAAAGGCAGG
CCCTCTCCAACCCGGACCGGGGTGTGGCAGGGACGTCGTCAGGATAATGT
GGTTGCGCCACGCCGCCAAGCGAGCCAAACGGGAAGGAACAGAGGGAGAG
AAAGGGAGGCAGTCCGCGACGCGGGCCGCGTACAGGATTCGAAGGCCGGC
GAGCCCGGAGGGAAAAACCGGGCGGGCGCCGGCTGACGAAAAAACTGGCT
GCCGCAGAGAGCTCTCTTGTCTCCTGCCTCTCCTGCCTCTCCTGTCTCTC
CTGCCTCTCCTGCCTCTCCTGCCTCTCCTGTCTTCCGTGGCGACGCTTGC
TTTGTTTGGAGAATGGAAAGCGGGGCTCTACTCGTCTGAATACTGTACTG
ACTCTTTGGTGGGAATCATTCTCGGAAGCGTTCCGCTTTTTTCGAAC
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Coding sequence (CDS) from alignment at C-linearis_contig74:820955..821851+

>mRNA_C-linearis_contig74.15058.1 ID=mRNA_C-linearis_contig74.15058.1|Name=mRNA_C-linearis_contig74.15058.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at C-linearis_contig74:820955..821851+ (Chordaria linearis ClinC8C monoicous)
ATGTCCGGCGGTGCTGCCCTCGGGGAGGCAGTCGACGCGGCTCAGGGTCG
TCTCGTACACCCCGGCGCCGTTGCGCGCACCCGCGATCGACTCCCACGTG
CTGAACGCCGCGTCATCAGGGAAAAGGCAGGCCCTCTCCAACCCGGACCG
GGGTGTGGCAGGGACGTCGTCAGGATAATGTGGTTGCGCCACGCCGCCAA
GCGAGCCAAACGGGAAGGAACAGAGGGAGAGAAAGGGAGGCAGTCCGCGA
CGCGGGCCGCGTACAGGATTCGAAGGCCGGCGAGCCCGGAGGGAAAAACC
GGGCGGGCGCCGGCTGACGAAAAAACTGGCTGCCGCAGAGAGCTCTCTTG
TCTCCTGCCTCTCCTGCCTCTCCTGTCTCTCCTGCCTCTCCTGCCTCTCC
TGCCTCTCCTGTCTTCCGTGGCGACGCTTGCTTTGTTTGGAGAATGGAAA
GCGGGGCTCTACTCGTCTGAATACTGTACTGACTCTTTGGTGGGAATCAT
TCTCGGAAGCGTTCCGCTTTTTTCGAACATGTCCGGCGGTGCTGCCCTCG
GGGAGGCAGTCGACGCGGCTCAGGGTCGTCTCGTACACCCCGGCGCCGTT
GCGCGCACCCGCGATCGACTCCCACGTGCTGAACGCCGCGTCATCAGGGA
AAAGGCAGGCCCTCTCCAACCCGGACCGGGGTGTGGCAGGGACGTCGTCA
GGATAATGTGGTTGCGCCACGCCGCCAAGCGAGCCAAACGGGAAGGAACA
GAGGGAGAGAAAGGGAGGCAGTCCGCGACGCGGGCCGCGTACAGGATTCG
AAGGCCGGCGAGCCCGGAGGGAAAAACCGGGCGGGCGCCGGCTGACGAAA
AAACTGGCTGCCGCAGAGAGCTCTCTTGTCTCCTGCCTCTCCTGCCTCTC
CTGTCTCTCCTGCCTCTCCTGCCTCTCCTGCCTCTCCTGTCTTCCGTGGC
GACGCTTGCTTTGTTTGGAGAATGGAAAGCGGGGCTCTACTCGTCTGAAT
ACTGTACTGACTCTTTGGTGGGAATCATTCTCGGAAGCGTTCCGCTTTTT
TCGAAC
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