mRNA_C-linearis_contig73.14971.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig73.14971.1 vs. uniprot
Match: D7FX59_ECTSI (SET translocation n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX59_ECTSI) HSP 1 Score: 322 bits (825), Expect = 1.260e-101 Identity = 219/320 (68.44%), Postives = 238/320 (74.38%), Query Frame = 1
Query: 1 MPHPTLSEPPAKRQRFQRDGEESLGGSGGLEEDQEFRRLEAVSAVQDELNALGEEEAQQASRSIGFAAVLQVHKAFLKRKRPLYAKRQEAIAEVPDFWLKVLLAHPITQPYISDGDQLALSYLESVSVHK---TAAXXXXXXXXXXXXXXXXXXXXXXXKSA--------GENGGREEPRVEAEELDDDDDVGFRVTFTFRENPFFFNTELWREWETSEGQAAFSAVKWKNTDESRELQACLLWNLDPEADPEETPSFFSIFGDDMEEDYELGEALRGDITDNPLDIYMRHDFDAEAEEEEGEEEA-VEVGGEGEIGEFD 924
M LSEPPAKRQR Q +G+ + G EEDQEF+RLEAVS VQDELNAL EEEAQQ VL VHKAFLKRKRPLY KRQEAIA+VPDFWLKV PYISDGDQLALSYLE+V+VHK TAA XXXXXXXXXXXXXXXXXXXXXX G GG+ LDDDDDVGFRVTFTFRENPFF N+ELWREWE ++ +A+FS V WK+TDESR+LQ+CLLWNLDP A EETPSFFSIFGDDME DYELGEALRGDITDNPLDIYMRHDFDAEA E + G+GE GE+D
Sbjct: 1 MSRALLSEPPAKRQRAQGEGDGNADRPGLAEEDQEFQRLEAVSNVQDELNALEEEEAQQ---------VLLVHKAFLKRKRPLYIKRQEAIAQVPDFWLKV--------PYISDGDQLALSYLEAVAVHKATPTAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEGGK---------LDDDDDVGFRVTFTFRENPFFSNSELWREWEPADEKASFSVVNWKDTDESRDLQSCLLWNLDP-ALHEETPSFFSIFGDDME-DYELGEALRGDITDNPLDIYMRHDFDAEASEXXXXXXXXAQPEGDGEGGEYD 292
BLAST of mRNA_C-linearis_contig73.14971.1 vs. uniprot
Match: W7UBP8_9STRA (Protein set isoform 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBP8_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.590e-24 Identity = 90/259 (34.75%), Postives = 133/259 (51.35%), Query Frame = 1
Query: 115 LEAVSAVQDELNALGEEEAQQASRSIGFAAVLQVHKAFLKRKRPLYAKRQEAIAEVPDFWLKVLLAHPITQPYISDGDQLALSYLESVSVHKTAAXXXXXXXXXXXXXXXXXXXXXXXKSAGENGGREEPRVEAEE------LDDDDDVGFRVTFTFRENPFFFNTELWREWETSEGQAAFSA--VKWKNTDESRELQACLLWNL---DPEADPEET-PSFFSIFGDDMEEDYELGEALRGDITDNPLDIYMRHDFDAE 855
++A++ VQ ELN+L + Q A+ ++ K + + K+P+Y++RQEAI +VP+FW KVLLAHP +ISD DQ AL +L +V V +G REE +E L D +RV F F N +F N+ LW+E+ +A SA V WK+T ES+ LQ L+ +L DP PE PSFFSIF + + D E+G+ L+ ++ +P+ IY+ DF+ E
Sbjct: 53 VKAIATVQSELNSLEVSQTQ---------ALTEILKKYKELKKPVYSRRQEAIKQVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERL-------------------------DGAREEESEGGQEQGGGRILPD-----YRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESKGLQETLVPHLLAQDPV--PENVQPSFFSIFHAE-DRDLEMGDVLKEEVWRDPVGIYLSADFEEE 269
BLAST of mRNA_C-linearis_contig73.14971.1 vs. uniprot
Match: A0A4D9D956_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D956_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 7.460e-16 Identity = 75/209 (35.89%), Postives = 102/209 (48.80%), Query Frame = 1
Query: 265 EAIAEVPDFWLKVLLAHPITQPYISDGDQLALSYLESVSVHKTAAXXXXXXXXXXXXXXXXXXXXXXXKSAGENGGREEPRVEAEE------LDDDDDVGFRVTFTFRENPFFFNTELWREWETSEGQAAFSA--VKWKNTDESRELQACLLWNL---DPEADPEET-PSFFSIFGDDMEEDYELGEALRGDITDNPLDIYMRHDFDAE 855
+AIA VP+FW KVLLAHP +ISD DQ AL +L +V V +G REE +E L D +RV F F N +F N+ LW+E+ +A SA V WK+T ES LQ L+ +L DP PE PSFFSIF + + D E+G+ L+ ++ +P+ IY+ DF+ E
Sbjct: 54 KAIATVPEFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERL-------------------------DGAREEESEGGQEQGGGRILPD-----YRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVLWKDTQESEGLQEILVPHLLAQDPV--PENVQPSFFSIFHAE-DRDLEMGDVLKEEVWRDPVGIYLSADFEEE 229
BLAST of mRNA_C-linearis_contig73.14971.1 vs. uniprot
Match: T1EM54_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EM54_HELRO) HSP 1 Score: 85.1 bits (209), Expect = 1.030e-14 Identity = 66/261 (25.29%), Postives = 116/261 (44.44%), Query Frame = 1
Query: 115 LEAVSAVQDELNALGEEEAQQASRSIGFAAVLQVHKAFLKRKRPLYAKRQEAIAEVPDFWLKVLLAHPITQPYISDGDQLALSYLESVSVHKTAAXXXXXXXXXXXXXXXXXXXXXXXKSAGENGGREEPRVEAEELDDDDDVGFRVTFTFRENPFFFNTELWREW---ETSEGQAAFSAVKWKNTDESRELQACLLWNLDPEADPEETP--SFFSIFGDDMEEDY-ELGEALRGDITDNPLDIYMRHDFDAEAEEEEGEE 879
+E + VQ+E++ L E+ + + +L+V + + K ++P + KR E IA++P+FW+ + HP ++D D+ +L V V + DD G+++TF F+EN FF N + +E+ ET E + + + WKN + + A + D + + E+ SFFS F D+ + ELGE ++ DI NPL Y+ + D + EEG++
Sbjct: 31 IEKIDEVQNEIDRLNEQASDE---------ILKVEQKYNKLRQPFFQKRSEMIAKIPNFWVTAFVNHPQVSALLNDEDEEVFHFLTKVEVQEF---------------------------------------------DDIKSGYKITFHFKENEFFKNQTISKEFHLNETGEPSSISTPINWKNGKDLVKKYAAKGGSGDRKRNHEDQQPESFFSWFSDNSDAGVDELGEVIKDDIWPNPLQYYLASEMDEDHSGEEGDD 237
BLAST of mRNA_C-linearis_contig73.14971.1 vs. uniprot
Match: A0A3Q2DWB8_CYPVA (Protein SET-like n=12 Tax=Cyprinodontiformes TaxID=28738 RepID=A0A3Q2DWB8_CYPVA) HSP 1 Score: 84.0 bits (206), Expect = 2.250e-14 Identity = 70/267 (26.22%), Postives = 117/267 (43.82%), Query Frame = 1
Query: 94 EDQEFRRLEAVSAVQDELNALGEEEAQQASRSIGFAAVLQVHKAFLKRKRPLYAKRQEAIAEVPDFWLKVLLAHPITQPYISDGDQLALSYLESVSVHKTAAXXXXXXXXXXXXXXXXXXXXXXXKSAGENGGREEPRVEAEELDDDDDVGFRVTFTFRENPFFFNTELWREWETSEGQAAFSA---VKWKNTDESRELQACLLWNLDPEADPEETPSFFSIFGDDMEEDY-ELGEALRGDITDNPLDIYMRHDFDAEAEEEEGEEE 882
E ++ +E + VQ+E++ L E+ +++ +L+V + + K ++P + KR E IA++P+FW+ + HP + + D+ AL YL V V E E++ G+R+ F+F ENP+F N L +E+ +EG S +KWK + + + EE SFF+ F D + ELGE ++ DI NPL Y+ D E+EEGE++
Sbjct: 6 EKEQQEAIEHIDEVQNEIDRLNEQASEE---------ILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLSKVEV-----------------------------------------TEFEDIKS----GYRIDFSFDENPYFENKVLSKEFNVNEGGDPVSKSTEIKWKAGKDLTKRSGQTPNKAGKKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDI----EDEEGEDD 214
BLAST of mRNA_C-linearis_contig73.14971.1 vs. uniprot
Match: A0A087YLT0_POEFO (Protein SET-like n=10 Tax=Cyprinodontiformes TaxID=28738 RepID=A0A087YLT0_POEFO) HSP 1 Score: 83.6 bits (205), Expect = 4.170e-14 Identity = 70/266 (26.32%), Postives = 116/266 (43.61%), Query Frame = 1
Query: 94 EDQEFRRLEAVSAVQDELNALGEEEAQQASRSIGFAAVLQVHKAFLKRKRPLYAKRQEAIAEVPDFWLKVLLAHPITQPYISDGDQLALSYLESVSVHKTAAXXXXXXXXXXXXXXXXXXXXXXXKSAGENGGREEPRVEAEELDDDDDVGFRVTFTFRENPFFFNTELWREWETSEGQAAFSA---VKWKNTDESRELQACLLWNLDPEADPEETPSFFSIFGDDMEEDY-ELGEALRGDITDNPLDIYMRHDFDAEAEEEEGEE 879
E ++ +E + VQ+E++ L E+ +++ +L+V + + K ++P + KR E IA++P+FW+ + HP + + D+ AL YL V V E E++ G+R+ F+F ENP+F N L +E+ +EG S +KWK + + + EE SFF+ F D + ELGE ++ DI NPL Y+ D E+EEGE+
Sbjct: 24 EKEQQEAIEHIDEVQNEIDRLNEQASEE---------ILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLSKVEV-----------------------------------------TEFEDIKS----GYRIDFSFDENPYFENKVLSKEFNVNEGGDPVSKSTEIKWKAGKDLTKRSGQTPNKAGKKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDM----EDEEGED 231
BLAST of mRNA_C-linearis_contig73.14971.1 vs. uniprot
Match: A0A315VNN3_GAMAF (Uncharacterized protein (Fragment) n=1 Tax=Gambusia affinis TaxID=33528 RepID=A0A315VNN3_GAMAF) HSP 1 Score: 84.0 bits (206), Expect = 7.250e-14 Identity = 69/267 (25.84%), Postives = 117/267 (43.82%), Query Frame = 1
Query: 88 LEEDQEFRRLEAVSAVQDELNALGEEEAQQASRSIGFAAVLQVHKAFLKRKRPLYAKRQEAIAEVPDFWLKVLLAHPITQPYISDGDQLALSYLESVSVHKTAAXXXXXXXXXXXXXXXXXXXXXXXKSAGENGGREEPRVEAEELDDDDDVGFRVTFTFRENPFFFNTELWREWETSEGQAAFSA---VKWKNTDESRELQACLLWNLDPEADPEETPSFFSIFGDDMEEDY-ELGEALRGDITDNPLDIYMRHDFDAEAEEEEGE 876
+++ ++ +E + VQ+E++ L E+ +++ +L+V + + K ++P + KR E IA++P+FW+ + HP + + D+ AL YL V V E E++ G+R+ F+F ENP+F N L +E+ +EG S +KWK + + + EE SFF+ F D + ELGE ++ DI NPL Y+ D E+EEGE
Sbjct: 7 IKQKEQQEAIEHIDEVQNEIDRLNEQASEE---------ILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLSKVEV-----------------------------------------TEFEDIKS----GYRIDFSFDENPYFENKVLSKEFNVNEGGDPVSKSTEIKWKTGKDLTKRSGQTPNKAGKKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDM----EDEEGE 215
BLAST of mRNA_C-linearis_contig73.14971.1 vs. uniprot
Match: A0A2K6SAC3_SAIBB (Uncharacterized protein n=5 Tax=Platyrrhini TaxID=9479 RepID=A0A2K6SAC3_SAIBB) HSP 1 Score: 82.4 bits (202), Expect = 1.370e-13 Identity = 75/275 (27.27%), Postives = 123/275 (44.73%), Query Frame = 1
Query: 79 SGGLEEDQEFRRLEAVSAVQDELNALGEEEAQQASRSIGFAAVLQVHKAFLKRKRPLYAKRQEAIAEVPDFWLKVLLAHPITQPYISDGDQLALSYLESVSVHKTAAXXXXXXXXXXXXXXXXXXXXXXXKSAGENGGREEPRVEAEELDDDDDVGFRVTFTFRENPFFFNTELWREW---ETSEGQAAFSAVKWKN----TDESRELQACLLWNLDPEADPEETPSFFSIFGDDMEEDYE-LGEALRGDITDNPLDIYMRHDFDAEAEEEEGEE 879
S G +E QE +E + VQ+E++ L E+ +++ +L+V + + + ++P + KR E IA++P+FW+ + HP + + D+ AL YL VE E +D G+++ F F ENP+F N + RE+ E+ + + + +KWK+ T S + Q + + EE SFF+ F D + + LGE ++ DI NPL Y+ D D E EE EGEE
Sbjct: 29 SKGEKEQQEI--IENIDEVQNEIDRLNEQASEE---------ILKVEQKYNRLRQPFFQKRSELIAKIPNFWVTTFVNHPQISTLLGEEDEEALHYLIG--------------------------------------------VEVTEFEDIIKSGYKIDFHFDENPYFENKVISREFHLNESGDPSSTSTEIKWKSGKDLTKRSSQRQNIAI----RKRKHEEPESFFTWFKDHSDAGADDLGEVIKDDIWQNPLQYYLVPDMDDE-EEGEGEE 243
BLAST of mRNA_C-linearis_contig73.14971.1 vs. uniprot
Match: A0A2Y9RXY4_PHYMC (protein SET-like n=21 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2Y9RXY4_PHYMC) HSP 1 Score: 82.0 bits (201), Expect = 2.020e-13 Identity = 73/288 (25.35%), Postives = 124/288 (43.06%), Query Frame = 1
Query: 10 PTLSEPPAKRQRFQRDGEESLGGSGGL--EEDQEFRRLEAVSAVQDELNALGEEEAQQASRSIGFAAVLQVHKAFLKRKRPLYAKRQEAIAEVPDFWLKVLLAHPITQPYISDGDQLALSYLESVSVHKTAAXXXXXXXXXXXXXXXXXXXXXXXKSAGENGGREEPRVEAEELDDDDDVGFRVTFTFRENPFFFNTELWREW---ETSEGQAAFSAVKWKNTDESRELQACLLWNLDPEADPEETPSFFSIFGDDMEEDY-ELGEALRGDITDNPLDIYMRHDFDAE 855
P ++ P K +R E S L EE ++ +E + VQ+E++ L E+ +++ +L+V + + K ++P++ KR E IA++P+FW+ + HP + + D+ AL YL RVE E +D G+R+ F F EN +F N L +E+ E+ + + + +KWK+ + + + + EE SFF+ F D + ELGE ++ DI NPL Y+ D D E
Sbjct: 10 PPQAKKPKKLRRTPASRPEETSASPNLPKEEKEQQEAIEHIDEVQNEIDRLNEQASEE---------ILKVEQKYNKLRQPVFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLT--------------------------------------------RVEVTEFEDIKS-GYRIDFYFDENSYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDE 243
BLAST of mRNA_C-linearis_contig73.14971.1 vs. uniprot
Match: A0A3B5KMQ2_9TELE (SET nuclear proto-oncogene b n=2 Tax=Poeciliinae TaxID=586240 RepID=A0A3B5KMQ2_9TELE) HSP 1 Score: 80.9 bits (198), Expect = 2.180e-13 Identity = 64/251 (25.50%), Postives = 109/251 (43.43%), Query Frame = 1
Query: 94 EDQEFRRLEAVSAVQDELNALGEEEAQQASRSIGFAAVLQVHKAFLKRKRPLYAKRQEAIAEVPDFWLKVLLAHPITQPYISDGDQLALSYLESVSVHKTAAXXXXXXXXXXXXXXXXXXXXXXXKSAGENGGREEPRVEAEELDDDDDVGFRVTFTFRENPFFFNTELWREWETSEGQAAFSA---VKWKNTDESRELQACLLWNLDPEADPEETPSFFSIFGDDMEEDY-ELGEALRGDITDNPLDIYM 834
E ++ +E + VQ+E++ L E+ +++ +L+V + + K ++P + KR E IA++P+FW+ + HP + + D+ AL YL V V E E++ G+R+ F+F ENP+F N L +E+ +EG S +KWK + + + + EE SFF+ F D + ELGE ++ DI NPL Y+
Sbjct: 24 EKEQQEAIEHIDEVQNEIDRLNEQASEE---------ILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLSKVEV-----------------------------------------TEFEDIKS----GYRIDFSFDENPYFENKVLSKEFNVNEGGDPVSKSTEIKWKTGKDLTKRSSQTPNKAGKKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYL 220 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig73.14971.1 >prot_C-linearis_contig73.14971.1 ID=prot_C-linearis_contig73.14971.1|Name=mRNA_C-linearis_contig73.14971.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=328bp MPHPTLSEPPAKRQRFQRDGEESLGGSGGLEEDQEFRRLEAVSAVQDELNback to top mRNA from alignment at C-linearis_contig73:697783..702816+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig73.14971.1 ID=mRNA_C-linearis_contig73.14971.1|Name=mRNA_C-linearis_contig73.14971.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5034bp|location=Sequence derived from alignment at C-linearis_contig73:697783..702816+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig73:697783..702816+ >mRNA_C-linearis_contig73.14971.1 ID=mRNA_C-linearis_contig73.14971.1|Name=mRNA_C-linearis_contig73.14971.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at C-linearis_contig73:697783..702816+ (Chordaria linearis ClinC8C monoicous)back to top |