mRNA_C-linearis_contig73.14957.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14957.1
Unique NamemRNA_C-linearis_contig73.14957.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig73.14957.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 4.320e-43
Identity = 93/106 (87.74%), Postives = 96/106 (90.57%), Query Frame = 2 
Query:  329 PVTGSTGGAAPASGAAVSKKPKQGRGPYKK-TPRITDEAEREGVKAMVKAIGEAFQRAKARTEVSGKRDGVHH-MALPSNQASRFYLVRYLVKNDAEFAPGAWYVN 640
            P TGS G AAPASGAAVSK+PKQGR  YKK TPR TDEA+REGVKAMVKAIGEAFQRAK RTEV+ KRDGVHH MALPSNQASRFYLVRYLVKNDAEFAPGAWYVN
Sbjct:  962 PATGSYG-AAPASGAAVSKQPKQGRRLYKKKTPRTTDEAKREGVKAMVKAIGEAFQRAKVRTEVNDKRDGVHHYMALPSNQASRFYLVRYLVKNDAEFAPGAWYVN 1066
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BLAST of mRNA_C-linearis_contig73.14957.1 vs. uniprot
Match: D8LJ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ26_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 4.310e-37
Identity = 90/109 (82.57%), Postives = 93/109 (85.32%), Query Frame = 1 
Query:    1 MLDERRRRLNGGSDTSSDASSTTGEDLDVQFIRVEKELKLKTKELELKRVEDELRLHKSGAWFVAGPAAGAVPATGSSTXXXXXXXXXXXXXXXAAGAAVSSVPKSDAP 327
            MLDERR RL+GGSDTSSDASSTT EDLDVQFIRVEKELKLKTKELE+ RVEDELRL KSGAWFV GPAAGAVPA     XXXXXXXXXXXX    A AA+SSVPKS AP
Sbjct:    1 MLDERRLRLSGGSDTSSDASSTTDEDLDVQFIRVEKELKLKTKELEMARVEDELRLRKSGAWFVTGPAAGAVPAXXXXXXXXXXXXXXXXXTNIPARAAISSVPKSAAP 109
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BLAST of mRNA_C-linearis_contig73.14957.1 vs. uniprot
Match: D8LKS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS3_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.480e-13
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 LDERRRRLNGGSDTSSDASSTTGEDLDVQFIRVEKELKLKTKEL 135
            LDERRRRL GGSD  SDASSTT +DLDVQFIRVEKEL+LKTKEL
Sbjct:   15 LDERRRRLRGGSDNPSDASSTTDQDLDVQFIRVEKELELKTKEL 58
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BLAST of mRNA_C-linearis_contig73.14957.1 vs. uniprot
Match: D8LBS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS5_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.120e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2 
Query:  395 QGRGPYKKTPRITDEAEREGVKAMVKAIGEAFQRAK 502
            +G GPYKKTPRITDEAEREGV+AMVKAIGEAFQRAK
Sbjct:   45 RGWGPYKKTPRITDEAEREGVEAMVKAIGEAFQRAK 80
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K2A3_9PHAE4.320e-4387.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ26_ECTSI4.310e-3782.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKS3_ECTSI5.480e-1386.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LBS5_ECTSI2.120e-1091.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:495343..496102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_002870.1
Exons2
Model size642
Cds size642
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930402.4460766-CDS-C-linearis_contig73:495342..4955661622930402.4460766-CDS-C-linearis_contig73:495342..495566Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 495343..495566 -
1690881051.4525547-CDS-C-linearis_contig73:495342..4955661690881051.4525547-CDS-C-linearis_contig73:495342..495566Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 495343..495566 -
1622930402.4606824-CDS-C-linearis_contig73:495684..4961021622930402.4606824-CDS-C-linearis_contig73:495684..496102Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 495685..496102 -
1690881051.4631288-CDS-C-linearis_contig73:495684..4961021690881051.4631288-CDS-C-linearis_contig73:495684..496102Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 495685..496102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14957.1prot_C-linearis_contig73.14957.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 495343..496102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14957.1

>prot_C-linearis_contig73.14957.1 ID=prot_C-linearis_contig73.14957.1|Name=mRNA_C-linearis_contig73.14957.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=214bp
MLDERRRRLNGGSDTSSDASSTTGEDLDVQFIRVEKELKLKTKELELKRV
EDELRLHKSGAWFVAGPAAGAVPATGSSTVAAPMTGTAACATTVAAGAAV
SSVPKSDAPTRDWLYRWCCTRFWRCCLEKAQARPGPVQEDASDNRRGRTR
RGEGDGEGDWRSLPAGQGQDRGQRQERRCSSHGFAQQPSFEVLSGSVLGK
ERRRIRPRGMVRQ*
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mRNA from alignment at C-linearis_contig73:495343..496102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14957.1 ID=mRNA_C-linearis_contig73.14957.1|Name=mRNA_C-linearis_contig73.14957.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=760bp|location=Sequence derived from alignment at C-linearis_contig73:495343..496102- (Chordaria linearis ClinC8C monoicous)
ATGCTGGACGAGAGACGTCGCCGGCTCAACGGGGGATCGGACACCTCCTC
GGATGCCAGCAGCACGACCGGCGAAGACCTTGACGTGCAGTTCATCCGAG
TCGAGAAGGAGCTGAAGTTGAAGACGAAGGAACTCGAGTTGAAGAGGGTG
GAGGACGAACTCCGCCTCCACAAGTCTGGCGCATGGTTTGTGGCCGGCCC
TGCCGCTGGCGCCGTACCTGCCACCGGCTCTTCCACTGTTGCGGCACCCA
TGACTGGGACTGCTGCTTGTGCTACAACCGTTGCTGCTGGCGCTGCTGTC
TCGAGCGTGCCCAAGAGCGACGCACCCACCCGTGACTGGCTCTACAGGTG
GTGCTGCACCCGCTTCTGGCGCTGCTGTCTCGAAAAAGCCCAAGCAAGGC
CGGGGCCCGTACAAGAAGGTGAGCGTGTTTCTTCCTTGATATCATGAGAA
GAGTTGGGGTTAGATATGGGAACTCTCAATACTTCGTATTTTTTTAAATA
AAAAATACTTAAACGATACCGACGAATCAACTACAGACGCCTCGGATAAC
CGACGAGGCCGAACGCGAAGGGGTGAAGGCGATGGTGAAGGCGATTGGCG
AAGCCTTCCAGCGGGCCAAGGCCAGGACCGAGGTCAGCGGCAAGAGAGAC
GGTGTTCATCACATGGCTTTGCCCAGCAACCAAGCTTCGAGGTTTTATCT
GGTTCGGTACTTGGTAAAGAACGACGCCGAATTCGCCCCAGGGGCATGGT
ACGTCAATAG
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Coding sequence (CDS) from alignment at C-linearis_contig73:495343..496102-

>mRNA_C-linearis_contig73.14957.1 ID=mRNA_C-linearis_contig73.14957.1|Name=mRNA_C-linearis_contig73.14957.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at C-linearis_contig73:495343..496102- (Chordaria linearis ClinC8C monoicous)
ATGCTGGACGAGAGACGTCGCCGGCTCAACGGGGGATCGGACACCTCCTC
GGATGCCAGCAGCACGACCGGCGAAGACCTTGACGTGCAGTTCATCCGAG
TCGAGAAGGAGCTGAAGTTGAAGACGAAGGAACTCGAGTTGAAGAGGGTG
GAGGACGAACTCCGCCTCCACAAGTCTGGCGCATGGTTTGTGGCCGGCCC
TGCCGCTGGCGCCGTACCTGCCACCGGCTCTTCCACTGTTGCGGCACCCA
TGACTGGGACTGCTGCTTGTGCTACAACCGTTGCTGCTGGCGCTGCTGTC
TCGAGCGTGCCCAAGAGCGACGCACCCACCCGTGACTGGCTCTACAGGTG
GTGCTGCACCCGCTTCTGGCGCTGCTGTCTCGAAAAAGCCCAAGCAAGGC
CGGGGCCCGTACAAGAAGATGCTGGACGAGAGACGTCGCCGGCTCAACGG
GGGATCGGACACCTCCTCGGATGCCAGCAGCACGACCGGCGAAGACCTTG
ACGTGCAGTTCATCCGAGTCGAGAAGGAGCTGAAGTTGAAGACGAAGGAA
CTCGAGTTGAAGAGGGTGGAGGACGAACTCCGCCTCCACAAGTCTGGCGC
ATGGTTTGTGGCCGGCCCTGCCGCTGGCGCCGTACCTGCCACCGGCTCTT
CCACTGTTGCGGCACCCATGACTGGGACTGCTGCTTGTGCTACAACCGTT
GCTGCTGGCGCTGCTGTCTCGAGCGTGCCCAAGAGCGACGCACCCACCCG
TGACTGGCTCTACAGGTGGTGCTGCACCCGCTTCTGGCGCTGCTGTCTCG
AAAAAGCCCAAGCAAGGCCGGGGCCCGTACAAGAAGACGCCTCGGATAAC
CGACGAGGCCGAACGCGAAGGGGTGAAGGCGATGGTGAAGGCGATTGGCG
AAGCCTTCCAGCGGGCCAAGGCCAGGACCGAGGTCAGCGGCAAGAGAGAC
GGTGTTCATCACATGGCTTTGCCCAGCAACCAAGCTTCGAGGTTTTATCT
GGTTCGGTACTTGGTAAAGAACGACGCCGAATTCGCCCCAGGGGCATGGT
ACGTCAATAGACGCCTCGGATAACCGACGAGGCCGAACGCGAAGGGGTGA
AGGCGATGGTGAAGGCGATTGGCGAAGCCTTCCAGCGGGCCAAGGCCAGG
ACCGAGGTCAGCGGCAAGAGAGACGGTGTTCATCACATGGCTTTGCCCAG
CAACCAAGCTTCGAGGTTTTATCTGGTTCGGTACTTGGTAAAGAACGACG
CCGAATTCGCCCCAGGGGCATGGTACGTCAATAG
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