mRNA_C-linearis_contig111.1489.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig111.1489.1
Unique NamemRNA_C-linearis_contig111.1489.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: D7FL79_ECTSI (Tropinone reductase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL79_ECTSI)

HSP 1 Score: 409 bits (1051), Expect = 1.040e-142
Identity = 202/245 (82.45%), Postives = 223/245 (91.02%), Query Frame = 1
Query:    1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
            +GIGKAIVEELA LGAKVLTCSRTE+ V AC+ EW+AKGLEV GIAVDV+T EGRQ LF++AE+ F GALDILVNNVGRSIRK+STFD+TP+EF  II+ NF++VL LT+L HPLLK AA AEGAR +GGSSVVN+SSIAGVTAVKTGA YAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPS ESVPR+ EL DRIPMGRWADPHEISGQVAFLCM+ ASYITSQVICVDGGW++NGWM
Sbjct:   26 KGIGKAIVEELACLGAKVLTCSRTEDGVIACITEWRAKGLEVHGIAVDVTTAEGRQELFSAAEEHFDGALDILVNNVGRSIRKSSTFDFTPEEFETIINTNFSTVLSLTKLFHPLLKAAAAAEGARDKGGSSVVNISSIAGVTAVKTGAAYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSTESVPRSTELMDRIPMGRWADPHEISGQVAFLCMKGASYITSQVICVDGGWASNGWM 270          
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A6H5JMS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS4_9PHAE)

HSP 1 Score: 387 bits (993), Expect = 2.600e-133
Identity = 204/293 (69.62%), Postives = 225/293 (76.79%), Query Frame = 1
Query:    1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVA-------------------------EWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQ-----------------------LLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
            +GIGKAIVEELA LGAKVLTCSRTE+ VTAC+                          EW+AKGLEV GIAVDV+T EGRQ L+++AE+RF GALDILVNNVGRSIRK+STFDYTP+EF  IID NF++VL LT+                       L HPLLK AA AEGARA+GGSSVVN+SSIAGV AVKTGA YAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPS ESVPR+ EL DRIPMGRWA+PHEISGQVAFLCM+ ASYITSQVICVDGGW++NGWM
Sbjct:   15 RGIGKAIVEELACLGAKVLTCSRTEDGVTACITGCLCVVLRDLSSRAFAVVLCLWLQQEWRAKGLEVYGIAVDVTTAEGRQELYSAAEERFDGALDILVNNVGRSIRKSSTFDYTPEEFETIIDTNFSTVLSLTKARLYVFTLICLGRFASLIPCSVFLFHPLLKAAAAAEGARAKGGSSVVNISSIAGVIAVKTGAAYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSTESVPRSTELMDRIPMGRWAEPHEISGQVAFLCMKGASYITSQVICVDGGWASNGWM 307          
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: D7FL76_ECTSI (Tropinone reductase, putative / tropine dehydrogenase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL76_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 3.950e-104
Identity = 159/249 (63.86%), Postives = 192/249 (77.11%), Query Frame = 1
Query:    1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVP----RNAELTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
            +GIGKAIVEELA LGAKV+TCSR   DV AC+ EWK+KGL V+G A DV+T EGR++L   AE+ FGG LDILVNNVG +IRK +T DYTP+E A ++D NF S+ LLT+LLHPLLK AA  +G+R  GGSSV+N+SS+AG+T +K+G+ YAASKAA+N++T  WGCEWA DGIRVNAVAP  T TP  E V     R  E+T R PM RWAD  E+SG VAFLCM+ A YITSQVI  DGG++ NGWM
Sbjct:   59 KGIGKAIVEELACLGAKVITCSRNPADVAACLEEWKSKGLLVEGTAADVTTAEGRESLVKLAEEHFGGLLDILVNNVGTNIRK-ATVDYTPEELAYVMDTNFTSLFLLTKLLHPLLKAAAAVKGSRENGGSSVINISSVAGITPIKSGSPYAASKAAMNQVTRLWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADPVRVNEITQRTPMKRWADADEVSGMVAFLCMKGAGYITSQVIATDGGFTANGWM 306          
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A835YM08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM08_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.940e-81
Identity = 134/249 (53.82%), Postives = 173/249 (69.48%), Query Frame = 1
Query:    1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPS----MESVPRNAELTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
            +GIG AIV ELA LGA+V TC+R++ D+  C+AEW+A+GL+V G   DVS+ E R  L     + FGG+LDILVNNVG SIR+ +T DYT +E   ++ VNF+S   + QL HPLLK A        +GG SVVN+ S+AGVT++K+G  YAASKAA++++T N  CEWA DGIRVN VAP  TNTP      E   + AE+  R PM R A+  E+S  VAFLCM+ ASYIT QV+CVDGG++ NGW+
Sbjct:   19 KGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRR-ATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEA--------QGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGWI 258          
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A6U3WSM2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3WSM2_9STRA)

HSP 1 Score: 228 bits (581), Expect = 7.740e-71
Identity = 122/249 (49.00%), Postives = 172/249 (69.08%), Query Frame = 1
Query:    1 QGIGKAIVEELASL-GAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAE----LTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGW 732
            +GIG+AIVEELAS  G +VLTCSR+E+D++AC+AEW+ KG++V G+  DVST EGR+ + +  ++  GG LDILVNNVG +IRK  T +Y P++   I+  NF S+  LT++ HP L+ + +         SSVVN+ S+AGVT +K+G+ YA +KAA+N+LT N  CEW   GIR+N VAP   NTP  + V ++ E    + +R P+GR  +P E++G VAFLC+  A YIT QVI VDGG++  G+
Sbjct:   53 KGIGRAIVEELASTHGCRVLTCSRSEDDLSACLAEWREKGMDVDGVVADVSTPEGREAIVSKIDE-VGGKLDILVNNVGTNIRKP-TIEYAPEDLNFILQTNFVSMFELTKMCHPYLRQSYQDRKMT----SSVVNIGSVAGVTCMKSGSPYAITKAAMNQLTGNLACEWGLHGIRINCVAPWYINTPLAKQVLKDEEYKKSVLERTPVGRVGEPEEVAGIVAFLCLPIAGYITGQVISVDGGFTRQGF 295          
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: UPI000D1D03F3 (tropinone reductase homolog At5g06060 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1D03F3)

HSP 1 Score: 225 bits (574), Expect = 2.490e-70
Identity = 118/248 (47.58%), Postives = 161/248 (64.92%), Query Frame = 1
Query:    1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRN----AELTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGW 732
            +GIG+++VEELA LGA V TCSR+E+++   + EW+   L+V G   D+S   GR+ L     Q FGG LDILVNNVG ++RK ST DYT ++ + +   NF S   ++QL HPLLK A         G SS+V +SS+AGV A+ TGA+YAA+K A+N+LT N  CEWA+DGIRVNAVAP    T  +E +       A + DR P  R  +P E++   AFL + ++SY+T QVICVDGG++  G+
Sbjct:   22 RGIGRSVVEELAGLGASVYTCSRSEKNLNERLQEWRQSNLDVHGSTCDLSKPSGREELVKLVAQHFGGKLDILVNNVGTNVRKQSTLDYTTEDISTVFSTNFESAFHISQLAHPLLKAA---------GNSSLVFISSVAGVVAIATGALYAATKGAMNQLTKNLACEWAQDGIRVNAVAPWYIKTDLVEEILAKPGYEAAVLDRTPARRVGEPREVAAVAAFLALPASSYVTGQVICVDGGFTVYGF 260          
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A2K3NES8_TRIPR (Tropinone reductase-like protein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3NES8_TRIPR)

HSP 1 Score: 224 bits (572), Expect = 6.620e-70
Identity = 122/249 (49.00%), Postives = 161/249 (64.66%), Query Frame = 1
Query:    1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTD----RIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
            +GIG AIV +LA+ GA V TCSRTE ++  C+ EW+ +G  V G   DVS+   R+ L       F G L+I +NNVG + RK  T DYT +E++ ++ +N +S   L+QL HPLLK +        R G S+V +SS+AGV ++ TGAVYAASKAAIN+LT N  CEWAKDGIR N V P AT TP +E + +N +  D    R P+ R A+P E+S  V FLC+ +ASYIT QVICVDGG +  G+ 
Sbjct:   28 RGIGHAIVNDLAAFGATVHTCSRTESELNKCLKEWQTQGFLVTGSVCDVSSRPQRENLVQQVSSTFNGKLNIFINNVGTNFRKP-TIDYTAEEYSELMTINLDSAFHLSQLTHPLLKES--------RVGGSIVFISSVAGVVSLGTGAVYAASKAAINQLTKNLACEWAKDGIRSNCVVPWATRTPLVEHLLQNQKFVDDIMARTPLKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGLTVFGFQ 267          
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A396IZB6_MEDTR (Putative oxidoreductase n=6 Tax=Trifolieae TaxID=163742 RepID=A0A396IZB6_MEDTR)

HSP 1 Score: 224 bits (571), Expect = 9.380e-70
Identity = 124/249 (49.80%), Postives = 160/249 (64.26%), Query Frame = 1
Query:    1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTD----RIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
            +GIG AIVE+L   GA V TCSR ++++  C+ +W++KG  V G   DVS+ E R+ L       F G L I VNNVG + RK  T +YT + ++ I+ +N +S   L QL HPLLK         A G  S+V +SSIAGV ++ TG+VYAASKAAI +LT N  CEWAKDGIR N V P  TNTP +E + RN +  D    R P+GR A+ HE+S  VAFLC+ +ASYIT QVICVDGG + NG+ 
Sbjct:   29 RGIGHAIVEDLCGFGATVHTCSRNQDELNNCLNQWRSKGFLVSGSVCDVSSREQREKLIQEVASIFNGKLHIYVNNVGANFRKP-TIEYTAEVYSEIMAINLDSAYHLCQLTHPLLK---------AYGMGSIVFISSIAGVVSLGTGSVYAASKAAITQLTKNLACEWAKDGIRSNCVVPATTNTPLVEHLLRNKQYMDEMLSRTPLGRIAESHEVSSLVAFLCLPAASYITGQVICVDGGLTVNGFQ 267          
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: W1NZZ4_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NZZ4_AMBTC)

HSP 1 Score: 224 bits (570), Expect = 1.210e-69
Identity = 120/248 (48.39%), Postives = 157/248 (63.31%), Query Frame = 1
Query:    1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTD----RIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGW 732
            +GIG A VEE+ASLGA V TCSR E+D+  C+ EWK  GL+  G   D+S+   R+ L ++    F G L+ILVNNVG +IRK  T  YT  EF+ ++  N  S   + QL HPLLK         A G  S+V +SS+AGV A+ TG +YAA+K A+N++T N  CEWAKD IR N+VAP    TP +E   +   +T+    R PM R  +P E+S  VAFLC+ +ASYIT Q+ICVDGG + NGW
Sbjct:   31 KGIGHATVEEIASLGASVYTCSRNEDDLNKCLNEWKGMGLDAHGSVCDLSSRPDREKLIDAVSSHFKGKLNILVNNVGTNIRKP-TMQYTAAEFSFLMATNLESAYHMCQLTHPLLK---------ASGVGSIVFISSVAGVVALHTGTIYAATKGALNQITKNLACEWAKDNIRTNSVAPWFIKTPLVEDFLQVKGITEGIIARTPMRRMGEPEEVSSLVAFLCLPAASYITGQIICVDGGMTVNGW 268          
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A6J1CCC2_MOMCH (tropinone reductase homolog At5g06060 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CCC2_MOMCH)

HSP 1 Score: 224 bits (570), Expect = 1.330e-69
Identity = 118/248 (47.58%), Postives = 165/248 (66.53%), Query Frame = 1
Query:    1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTDRI----PMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGW 732
            +GIG+A+VEELA+LGA V TCSR E ++  C+ EW+ KG  V+G   D S+   R+ L    E  F G L+ILVNNVG++IRK  T +Y+ +EF+ ++  NF S   L+QL HPLLK         A G  S+V +SS+ G+ ++ +G++YAA+K+AIN+LT N  CEWAKD IR N VAP  TNTP +E +  N    D++    P+GR  + +E+S  VAFLC+ +ASYIT Q+I VDGG++ NG+
Sbjct:   27 RGIGRAVVEELAALGASVHTCSRNEAELNRCLKEWEGKGFVVRGSVCDASSRTHRERLMQEVESAFNGRLNILVNNVGKNIRKP-TIEYSLEEFSSLMTTNFESAYHLSQLSHPLLK---------ASGNGSIVFISSVGGLMSIGSGSIYAATKSAINQLTKNLACEWAKDNIRSNCVAPWYTNTPLVEKLLDNKTFVDKVVSRTPLGRIGESNEVSSLVAFLCLPTASYITGQIISVDGGFTANGF 264          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL79_ECTSI1.040e-14282.45Tropinone reductase, putative n=1 Tax=Ectocarpus s... [more]
A0A6H5JMS4_9PHAE2.600e-13369.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL76_ECTSI3.950e-10463.86Tropinone reductase, putative / tropine dehydrogen... [more]
A0A835YM08_9STRA1.940e-8153.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U3WSM2_9STRA7.740e-7149.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
UPI000D1D03F32.490e-7047.58tropinone reductase homolog At5g06060 n=2 Tax=Sela... [more]
A0A2K3NES8_TRIPR6.620e-7049.00Tropinone reductase-like protein n=2 Tax=Trifolium... [more]
A0A396IZB6_MEDTR9.380e-7049.80Putative oxidoreductase n=6 Tax=Trifolieae TaxID=1... [more]
W1NZZ4_AMBTC1.210e-6948.39Uncharacterized protein n=1 Tax=Amborella trichopo... [more]
A0A6J1CCC2_MOMCH1.330e-6947.58tropinone reductase homolog At5g06060 n=1 Tax=Momo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:143031..146276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score411.0
Seed ortholog evalue3.9e-112
Seed eggNOG ortholog2880.D7FL79
KEGG rclassRC00144
KEGG koko:K05354,ko:K08081
KEGG ReactionR02832,R06734
KEGG Pathwayko00960,ko01100,ko01110,map00960,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0002213,GO:0003674,GO:0003824,GO:0004022,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006950,GO:0006952,GO:0007568,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0055114
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-19_005190.1
EC1.1.1.206,1.1.1.236
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons6
Model size738
Cds size738
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1489.1prot_C-linearis_contig111.1489.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig111 143031..146276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.0290096-CDS-C-linearis_contig111:143030..1431871622927482.0290096-CDS-C-linearis_contig111:143030..143187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 143031..143187 -
1690879726.187408-CDS-C-linearis_contig111:143030..1431871690879726.187408-CDS-C-linearis_contig111:143030..143187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 143031..143187 -
1622927482.0440102-CDS-C-linearis_contig111:143669..1438081622927482.0440102-CDS-C-linearis_contig111:143669..143808Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 143670..143808 -
1690879726.198549-CDS-C-linearis_contig111:143669..1438081690879726.198549-CDS-C-linearis_contig111:143669..143808Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 143670..143808 -
1622927482.055135-CDS-C-linearis_contig111:144158..1442701622927482.055135-CDS-C-linearis_contig111:144158..144270Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 144159..144270 -
1690879726.2067943-CDS-C-linearis_contig111:144158..1442701690879726.2067943-CDS-C-linearis_contig111:144158..144270Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 144159..144270 -
1622927482.0669312-CDS-C-linearis_contig111:144816..1449631622927482.0669312-CDS-C-linearis_contig111:144816..144963Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 144817..144963 -
1690879726.2148736-CDS-C-linearis_contig111:144816..1449631690879726.2148736-CDS-C-linearis_contig111:144816..144963Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 144817..144963 -
1622927482.0777004-CDS-C-linearis_contig111:145703..1457871622927482.0777004-CDS-C-linearis_contig111:145703..145787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 145704..145787 -
1690879726.2256193-CDS-C-linearis_contig111:145703..1457871690879726.2256193-CDS-C-linearis_contig111:145703..145787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 145704..145787 -
1622927482.086663-CDS-C-linearis_contig111:146177..1462761622927482.086663-CDS-C-linearis_contig111:146177..146276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 146178..146276 -
1690879726.237333-CDS-C-linearis_contig111:146177..1462761690879726.237333-CDS-C-linearis_contig111:146177..146276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 146178..146276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig111.1489.1

>prot_C-linearis_contig111.1489.1 ID=prot_C-linearis_contig111.1489.1|Name=mRNA_C-linearis_contig111.1489.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=246bp
QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVS
TTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDV
NFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAV
YAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTD
RIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM*
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mRNA from alignment at C-linearis_contig111:143031..146276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig111.1489.1 ID=mRNA_C-linearis_contig111.1489.1|Name=mRNA_C-linearis_contig111.1489.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3246bp|location=Sequence derived from alignment at C-linearis_contig111:143031..146276- (Chordaria linearis ClinC8C monoicous)
CAGGGCATCGGTAAGGCAATCGTGGAGGAGCTGGCGAGCCTCGGGGCGAA GGTGCTGACGTGCTCTAGGACCGAGGAGGACGTGACGGCCTGCGTTGCGG TACGTTACCGTTACAGCTGCGTGTGCCTGCTCCTGGTCTAGACTATGTGT AGAACGATGCGTGCTACTGGCAGGCATTTATCGTCAGAGAAAGAGAAAGA GAAAGCGTGACGCGAACTAAACATTAAACGATCACGTGTACATGGAGCTT TTTCCTGTCACCACGTTTGCACAAGGGATGCTGTACACAGGGTGCGCGTT GATGCCGGCACCGTGTGCGGCACACGCCCTAATTTACACTCGAACGCGCG TCAATCGTGCGCTTCCATGATCGCTTGCTCTCGCGTGCACTGGCCCAACC TAACCCTCCAATTTTAGCTTGCTCGCTCTCCTCGTTGCTTGTTGCTTGTT GCGCCGGGCTGTTGGTGTTGCCCACCGACGACACGGCAGGAATGGAAAGC AAAAGGTCTGGAGGTGCAAGGCATCGCGGTGGATGTCTCGACGACGGAGG GCCGCCAGACCTTGTTCAACTCGGTGCGTTCGATTCGCTCGCTTTGGGGG GCTAGACTGACTGACTACTGTAAAGCTAGATTGCTCGGTAAGGAAGAGGG CGTCGACACCAAGTACCACATTTTAGGAGAGCTGTCGACGAGATCTGCCC AACGTCGCCCTATTCGGCACTATTATAACACTCTTTGTGGTTGTGGAATA ATCGAGCTTTGAAAGCCGGTCCAGGGGATGTGCGCTGACTCGTACTTTTG AGGTGGGCTATGCTCAACTGAACTGAACTGGACTGGGCTAGAATAGAGTA CAATCGAGGAGACTATTATAGGCCATAGTTGGCCCCTTGAGTTGAGTTTC TCCTGGGTGCTTTTCCTGCTGGTCTTGATAGAGAAGATAACGGCTGCCTG CCGTTTTCATTGCCATTGCCTCATCGAATTTGGAATTTCAGAAAGCTCTG CGGTATACTACGAAGAGCGAAACAAAAGTCAAAGCAGGCACTTGGTTCGC TTTTCCAACGCGCATACTTCGGGCTTCTTAGCCTGAAGTTGTCGAACAAT CGATAACATTTCCTTCCCCCCGACCTGCGTGTATTCTCGAAGAGTCTACC CCATCCGGCCTTTTTCCCTCCTTCCCTCTTTGTCGTCCCCTTGTCCCCTC CTCCCTTCTCTATTTTTGTGCCTTCTACCCCTAAAATGCTCTTGAGCTTT CTCCCTCTCTCCACACACACACACACACACACACACACACACACACATAT TTCGTTCTCGCAGGCGGAACAGCGATTCGGCGGTGCCTTGGACATCCTGG TAAACAACGTTGGCAGGAGCATCCGCAAGACCAGCACGTTCGACTACACT CCCCAAGAGTTCGCCGTCATCATCGACGTCAACTTTAACTCGGTCTTGCT GCTCACTCAGGTGCCGCTTCGCTGTTTGGTGAATGTCTTCTGCACTTGTG AAGTCCCGCTTCCTTTGTACGAGCGTTGGTGATGGGTGCCTTGGTGTTTA GGGATCAAAGACAGCAAGTAGTCTTGACTTTTCCTCGCGGTGGACAAACG TGGGCAGCGTATTGGCCGGGTTAGACGACGGAAGCGGCCTGCCTCTTTTC GGTTGGCTCAAGTAGGCACAGGCGCACAGGGCCGTGCATCGTTCAGGGCG GCACATTGTTTGTTGTGGGCAACACACCTGCTGAACCAAAGCACCCAAAA CAAAACAGGTAACACCAACAAAGATGCAACAAAGGTGTGACAAAGATGCG ATCGAGAGTAAAGTTTCTCCACAGGAGCACCAGGCAACAAGCGGCAGTGT ACTTAATTCATCTACGCTCTCTGCGTGATTCCTTTGTGAGCAGCACGCCC ACGCCCCCCGCCCCCCGCCCCCTGCTGCCGCCGCCGCGGCTACCACTGTT GTTTGTTTACAACGGCGCTTCAAAACGTTGCCAAACTTGCACGCACACTG TAATAGCTGCTGCACCCTCTCCTCAAGACTGCCGCAGAGGCGGAGGGGGC AAGGGCAAGAGGGGGCTCGTCCGTGGTGAACGTTTCTAGCATCGCCGGTG TTACCGCGGTGAAGACAGGTAACGGTATTGACGTCACAGCAGCGGTGGTG GTTCTTTTCTCCTTGGTCGTGGATTCGCCTGACTGCCTGTTTTGCCGCCT CCTGGTCGTTCTGTCTGCGTGCTGGCGGCGCAATTGCGCAGGTTCGATTA AGGGAGTGGTACTTGAAAGAACGTTCGGCATTTTGAGAGGAAACACCGGC AGTTCGGTCTCTCTTAAGTTGAAGCAGCCAAGCTTCAGGGTAATTTCAAA CGATACAACTCATGCTTCGATTCTTCTCCGACTCATGCCGGTTGAAGCAT TTACCTGTGGACAAGCACGTCGCTACTTTTCAGTTGTGCTCTCCAACATG GACCAACCATTTCTGCAGGCGCGGTTTACGCCGCAAGCAAGGCCGCGATC AACCGGCTGACGATCAACTGGGGGTGTGAGTGGGCAAAGGACGGGATCCG AGTGAACGCCGTGGCACCGGGGGCAACAAACACGCCTTCCATGGAGTCGG TTCCCAGGTACTGCAGCAGTGCCGTATTTTGTTTATCTTTGCCGTTCATA GTAACCAATAACGGATTTTTCTTCATTGTTGTGTTTCGAGTTGCTCTGGT ATTCTCGCTCGGCGGTCGTGCAATGTGCGATAAAAATTCTCTGGGTTTGT TGTTGACAGTCCCGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTT TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTTGTTGT TGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTTTTCTCGCACCCATCACCTGTCAGACAATGAGGCCTAACCC GAGAAGCAATGGAGGCCTCCACACCAACAACTATTGGCACCTACATAGGT GTGTGTAACACCCCGTGCTTCGGGGATCCTCATATTTCCGCTATCTCGGT GTGGTAAACGTCAACAATCCATTCACGGTATTCTGTTAGGAACGCAGAGC TGACGGACAGGATTCCCATGGGCCGGTGGGCGGATCCCCACGAAATTAGC GGCCAGGTCGCGTTCCTGTGCATGCAGAGCGCCAGCTATATCACGTCCCA GGTCATTTGCGTAGACGGCGGCTGGTCAAACAACGGGTGGATGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig111:143031..146276-

>mRNA_C-linearis_contig111.1489.1 ID=mRNA_C-linearis_contig111.1489.1|Name=mRNA_C-linearis_contig111.1489.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at C-linearis_contig111:143031..146276- (Chordaria linearis ClinC8C monoicous)
CAGGGCATCGGTAAGGCAATCGTGGAGGAGCTGGCGAGCCTCGGGGCGAA
GGTGCTGACGTGCTCTAGGACCGAGGAGGACGTGACGGCCTGCGTTGCGC
AGGGCATCGGTAAGGCAATCGTGGAGGAGCTGGCGAGCCTCGGGGCGAAG
GTGCTGACGTGCTCTAGGACCGAGGAGGACGTGACGGCCTGCGTTGCGGA
ATGGAAAGCAAAAGGTCTGGAGGTGCAAGGCATCGCGGTGGATGTCTCGA
CGACGGAGGGCCGCCAGACCTTGTTCAACTCGGAATGGAAAGCAAAAGGT
CTGGAGGTGCAAGGCATCGCGGTGGATGTCTCGACGACGGAGGGCCGCCA
GACCTTGTTCAACTCGGCGGAACAGCGATTCGGCGGTGCCTTGGACATCC
TGGTAAACAACGTTGGCAGGAGCATCCGCAAGACCAGCACGTTCGACTAC
ACTCCCCAAGAGTTCGCCGTCATCATCGACGTCAACTTTAACTCGGTCTT
GCTGCTCACTCAGGCGGAACAGCGATTCGGCGGTGCCTTGGACATCCTGG
TAAACAACGTTGGCAGGAGCATCCGCAAGACCAGCACGTTCGACTACACT
CCCCAAGAGTTCGCCGTCATCATCGACGTCAACTTTAACTCGGTCTTGCT
GCTCACTCAGCTGCTGCACCCTCTCCTCAAGACTGCCGCAGAGGCGGAGG
GGGCAAGGGCAAGAGGGGGCTCGTCCGTGGTGAACGTTTCTAGCATCGCC
GGTGTTACCGCGGTGAAGACAGCTGCTGCACCCTCTCCTCAAGACTGCCG
CAGAGGCGGAGGGGGCAAGGGCAAGAGGGGGCTCGTCCGTGGTGAACGTT
TCTAGCATCGCCGGTGTTACCGCGGTGAAGACAGGCGCGGTTTACGCCGC
AAGCAAGGCCGCGATCAACCGGCTGACGATCAACTGGGGGTGTGAGTGGG
CAAAGGACGGGATCCGAGTGAACGCCGTGGCACCGGGGGCAACAAACACG
CCTTCCATGGAGTCGGTTCCCAGGCGCGGTTTACGCCGCAAGCAAGGCCG
CGATCAACCGGCTGACGATCAACTGGGGGTGTGAGTGGGCAAAGGACGGG
ATCCGAGTGAACGCCGTGGCACCGGGGGCAACAAACACGCCTTCCATGGA
GTCGGTTCCCAGGAACGCAGAGCTGACGGACAGGATTCCCATGGGCCGGT
GGGCGGATCCCCACGAAATTAGCGGCCAGGTCGCGTTCCTGTGCATGCAG
AGCGCCAGCTATATCACGTCCCAGGTCATTTGCGTAGACGGCGGCTGGTC
AAACAACGGGTGGATGTGAGAACGCAGAGCTGACGGACAGGATTCCCATG
GGCCGGTGGGCGGATCCCCACGAAATTAGCGGCCAGGTCGCGTTCCTGTG
CATGCAGAGCGCCAGCTATATCACGTCCCAGGTCATTTGCGTAGACGGCG
GCTGGTCAAACAACGGGTGGATGTGA
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