prot_C-linearis_contig7.14608.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig7.14608.1
Unique Name	prot_C-linearis_contig7.14608.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	214

Homology

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BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 389 bits (998), Expect = 4.340e-136
Identity = 196/213 (92.02%), Postives = 207/213 (97.18%), Query Frame = 0

Query:    1 MEGTGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLTEFGADPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKTELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            MEG+GPRLSDEGHK+YR+RQTCMKMLEKRGYNVLQEHVSMTSEAFL ++G +P RH+LTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKM EE+VK+AIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVL+SEQK ELLKRYKLKDTQLPRIQSTDPVARF+GM QKGQVCKITRPSETAGRYVTYRLCI
Sbjct:    1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGM-QKGQVCKITRPSETAGRYVTYRLCI 212

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BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 283 bits (723), Expect = 3.440e-94
Identity = 139/211 (65.88%), Postives = 177/211 (83.89%), Query Frame = 0

Query:    7 RLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVS----MTSEAFLTEFGADPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKTELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            +LS EG K++R+R+TC+KML KRGYNV  EH+S      ++ F+ +FG +P R  +T+LVEKVDDP D+IFVFFPD+EKVGVK IR+Y ++M++E+V+K+IIV++GG+TP +R A  +LC QR VQ+EDFKDAELM+DIT+H LVPEHQVL +E+K ELLKRYKL DTQLPRI STDPVAR+YG+ Q+GQV KI RPSETAGRYVTYRLC+
Sbjct:    4 QLSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGL-QRGQVVKIIRPSETAGRYVTYRLCM 213

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BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.390e-77
Identity = 119/203 (58.62%), Postives = 161/203 (79.31%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLTEFGADPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKTELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 210
            L+ E  K++RVR+T +KML  RGY V +E +  T E F+ +FG +P R  +T+LVEKVDDP D +FVF+P+D KVGVKPIR+Y  +M++E+V KAI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VLT E+K  LLKRYKLKDTQLPR+Q++DP+AR+YGM  +GQV KI RPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGM-SRGQVVKIIRPSETAGRYVTYR 202

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BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 238 bits (606), Expect = 1.960e-76
Identity = 122/206 (59.22%), Postives = 163/206 (79.13%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLTEFGADPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKTELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            L+ E  K++RVR+TC+KML KRGY V +  + M+++ F  +FG  P R +LT+L EK DDP DQIFVFFP+DEKVGV PI+ Y ++M+  +V +AIIV+K  +TPFAR+A++E+ + R  +VE F+DAEL++DITEH LVPEH VLT +QK ELL+RY+LK +QLPRIQ  DP+AR+ G++Q GQV KI RPSETAGRYVTYR+C+
Sbjct:    8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQ-GQVVKIVRPSETAGRYVTYRICV 211

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BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 236 bits (603), Expect = 5.070e-76
Identity = 117/203 (57.64%), Postives = 159/203 (78.33%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLTEFGADPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKTELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 210
            L+ E  ++YRVR+T +KML  RGY V  + +  T++ F  +FG +P R  +T+LVEKVDDP D +FVF+PDD KVGVKPIR+Y  +M++E+V KAI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VLT E+K  LLKRYKLKD+QLPR+Q +DP+AR+YGM  +GQV KI RPSETAGRYVTYR
Sbjct:    6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGM-TRGQVVKIIRPSETAGRYVTYR 205

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BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot
Match: A0A6S9BLJ2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BLJ2_9STRA)

HSP 1 Score: 235 bits (599), Expect = 4.090e-75
Identity = 122/206 (59.22%), Postives = 160/206 (77.67%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLTEFGADPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKTELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            L+ E  ++YRV +T   MLEKRGY V +E  +M+++AF  +FG  P R +LT+LVEK DD  +Q+FVFFP DEKVGVKPI+  ++KM+EE V  AI+V++  IT FA+ A+QE+      ++E FK+AEL++DITEH LVPEHQVL+  +K ELLKRY+LK+TQLPRIQ  DPVAR+YGM ++GQV KI RPSETAGRYVTYR+C+
Sbjct:   27 LTPEASRLYRVYKTVAAMLEKRGYMVPREIRTMSADAFTQKFGEKPTRQSLTILVEKADDESNQLFVFFPIDEKVGVKPIKELTDKMKEETVSNAILVLREDITAFAKQAVQEM--SDSFRIEHFKEAELLVDITEHNLVPEHQVLSKNEKEELLKRYRLKETQLPRIQPNDPVARYYGM-KRGQVVKIIRPSETAGRYVTYRICM 229

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BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 233 bits (595), Expect = 7.790e-75
Identity = 116/203 (57.14%), Postives = 159/203 (78.33%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLTEFGADPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKTELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 210
            L+ E  ++YRVR+T +KML  RGY V +  + MT E+F  +FG +P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR++  +M++E+V KAI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL  ++K  LLKRY++KD+QLPR+Q TDP+AR+YG+  +GQV KI RPSETAGRYVTYR
Sbjct:    4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGI-TRGQVVKIIRPSETAGRYVTYR 203

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BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA)

HSP 1 Score: 236 bits (601), Expect = 9.470e-75
Identity = 120/210 (57.14%), Postives = 161/210 (76.67%), Query Frame = 0

Query:    4 TGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLTEFGADPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKTELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            T   L+ E  ++YRVR+T +KML  R Y V +  + MT EAF T+FG +P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y  +M++E+V KAI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL  ++K  LLKRY+++D+QLPR+Q TDP+AR+YGM  +GQV KI RPSETAGRYVTYR  I
Sbjct:   71 TMSELTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGM-TRGQVVKIIRPSETAGRYVTYRAVI 277

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BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot
Match: A0A7S2KP14_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KP14_9STRA)

HSP 1 Score: 231 bits (589), Expect = 1.350e-73
Identity = 120/210 (57.14%), Postives = 162/210 (77.14%), Query Frame = 0

Query:    4 TGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLTEFGADPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKTELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            +G  L+ E  +++RV +T   ML KRGY V ++   M+   F+ +F   P R +LT+LVEK DD  +Q+FVFFP+DEKVGVKPI++ +++M++E V +AI+V++  ITP AR A+QEL      ++E FK++EL++DITEHTLVPEHQVL++ +K ELLKRY+LKDTQLPRIQ  DPVARFYGM ++GQV KI RPSETAGRYVTYR+C+
Sbjct:   23 SGVSLNPEASRLFRVYKTVSAMLHKRGYLVPRDIRDMSPATFVEKFTEMPTRESLTMLVEKDDDESNQLFVFFPEDEKVGVKPIKTLTDRMKDESVSRAILVLRVDITPIARQALQEL--SESFRIEHFKESELLVDITEHTLVPEHQVLSTNEKQELLKRYRLKDTQLPRIQPNDPVARFYGM-KRGQVVKIIRPSETAGRYVTYRVCL 229

[Close]

BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot
Match: A0A7R9WH73_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WH73_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.040e-73
Identity = 119/206 (57.77%), Postives = 159/206 (77.18%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLTEFGADPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKTELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            L+ E  +++RV +T   ML KRGY V ++   MT  AF  +FG  P R +LT+LVEK DD  +Q+FVFFP+DEKVGVKPI+ Y+++M+EE V  A++V++  ITPFA+ A+QE+      ++E FK+AEL++DIT+H LVPEHQVL+  +K ELLKRY+LK+TQLPRIQ  DPVAR+YGM ++GQV KI RPSETAGRYVTYR+C+
Sbjct:   84 LTPEASRLFRVYKTVAAMLTKRGYMVPRDMRDMTPSAFTEKFGEYPARESLTILVEKADDETNQLFVFFPEDEKVGVKPIKIYTDRMKEEAVSNAVLVLRVDITPFAKQAVQEM--SDSFRIEHFKEAELLVDITDHQLVPEHQVLSQNEKQELLKRYRLKETQLPRIQPNDPVARYYGM-KRGQVVKIIRPSETAGRYVTYRICM 286

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot

BLAST of mRNA_C-linearis_contig7.14608.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G1Y9_ECTSI	4.340e-136	92.02	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YLJ3_9STRA	3.440e-94	65.88	RNA polymerase Rpb5, C-terminal domain-containing ...	[more]
W4GMP1_9STRA	1.390e-77	58.62	Uncharacterized protein n=3 Tax=Aphanomyces TaxID=...	[more]
A0A482UUV9_9ARCH	1.960e-76	59.22	DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a...	[more]
A0A067CT03_SAPPC	5.070e-76	57.64	Uncharacterized protein n=4 Tax=Saprolegniaceae Ta...	[more]
A0A6S9BLJ2_9STRA	4.090e-75	59.22	Hypothetical protein n=2 Tax=Ditylum brightwellii ...	[more]
K3WP89_GLOUD	7.790e-75	57.14	Uncharacterized protein n=27 Tax=Oomycota TaxID=47...	[more]
A0A2P4Y6Z7_9STRA	9.470e-75	57.14	DNA-directed RNA polymerase I, II, and III subunit...	[more]
A0A7S2KP14_9STRA	1.350e-73	57.14	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A7R9WH73_9STRA	2.040e-73	57.77	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 8..139 e-value: 1.1E-37 score: 131.1
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 10..139
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 10..94 e-value: 1.6E-26 score: 92.7
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 7..213 e-value: 1.8E-74 score: 245.5
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 140..213 e-value: 1.0E-32 score: 113.6
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 137..213
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 140..212 e-value: 4.9E-31 score: 106.4
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 10..211
None	No IPR available	PANTHER	PTHR10535:SF8		coord: 10..211
None	No IPR available	PRODOM	PD005155		coord: 146..211 e-value: 6.0E-22 score: 256.0
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 139..213 score: 19.249

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig7	contig	C-linearis_contig7:3724143..3726311 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig7.14608.1	mRNA_C-linearis_contig7.14608.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig7 3723817..3726311 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig7.14608.1 ID=prot_C-linearis_contig7.14608.1|Name=mRNA_C-linearis_contig7.14608.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=214bp
MEGTGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLTEFG
ADPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVK
KAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEH
QVLTSEQKTELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPS
ETAGRYVTYRLCI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036710	RNA_pol_Rpb5_N_sf
IPR005571	RNA_pol_Rpb5_N
IPR014381	DNA_RNA_pol_RPB5_euk/virus
IPR035913	RPB5-like_sf
IPR000783	RNA_pol_subH/Rpb5_C
IPR039531	Rpb5-like
IPR020609	RpoH/RPB5