mRNA_C-linearis_contig110.1460.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig110.1460.1 vs. uniprot
Match: A0A6H5L0Q6_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q6_9PHAE) HSP 1 Score: 485 bits (1248), Expect = 2.170e-156 Identity = 244/304 (80.26%), Postives = 262/304 (86.18%), Query Frame = 3
Query: 606 SNIGGSAVSGATRAAGQGDQAPAGKPRRSLSAWLKEGPFVLSMSPGFFGFYAHIGALIALEAEGLLEGVSFATGASAGGLVAGLFAAGLSPADMGETVVKFRRSDFWDPVGFGGLLRGKKFEEIVKATLPPGVSCFDQCRVPLAVSAFDAFHLTTRSLERGCLAQALRATCTFPVLFAPVWHEKGVLVDGGVRDTTGMWCVPERRKDCRRVLNVTFGDKDGRGVCVPPSSFPTASNPRPTADDMEIVSLPLTGLPRPHPFAMERGADAMEAARSQVAAAVGLPLLAGRDDSHWIAATSFTQPPP 1517
SN GS VS R G D A + RSLSAWLKEGPFVLSMSPGFFGFYAHIGALIAL+ EGLL VSFATGASAGGLVAGLFAAGLSP DMG+TVVKFRRSDFWDPVGFGGLLRGKKFE+IVK TLP GV FDQ R+PLAVSAFD LTTR+L+ GC+AQALRATCTFP LF+PVWH++GVLVDGGVRDTTGMWCVPE R+DCRR+LNVTFG ++GRGVCVPPSSFPTASNPRP D MEIVSLPLTGLPRPHPFAMERG DAMEAAR+QVAAA+G PLL G SHWIAAT+ TQPPP
Sbjct: 158 SNPAGSVVS---RGGGTSDGAGVLESPRSLSAWLKEGPFVLSMSPGFFGFYAHIGALIALDNEGLLNEVSFATGASAGGLVAGLFAAGLSPTDMGDTVVKFRRSDFWDPVGFGGLLRGKKFEDIVKGTLPGGVRRFDQGRIPLAVSAFDVSRLTTRTLDEGCIAQALRATCTFPGLFSPVWHDRGVLVDGGVRDTTGMWCVPEERQDCRRILNVTFGSRNGRGVCVPPSSFPTASNPRPAPDGMEIVSLPLTGLPRPHPFAMERGVDAMEAARNQVAAAIGEPLLKGHGRSHWIAATTATQPPP 458
BLAST of mRNA_C-linearis_contig110.1460.1 vs. uniprot
Match: D8LEM2_ECTSI (Patatin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM2_ECTSI) HSP 1 Score: 472 bits (1214), Expect = 8.790e-153 Identity = 240/304 (78.95%), Postives = 256/304 (84.21%), Query Frame = 3
Query: 606 SNIGGSAVSGATRAAGQGDQAPAGKPRRSLSAWLKEGPFVLSMSPGFFGFYAHIGALIALEAEGLLEGVSFATGASAGGLVAGLFAAGLSPADMGETVVKFRRSDFWDPVGFGGLLRGKKFEEIVKATLPPGVSCFDQCRVPLAVSAFDAFHLTTRSLERGCLAQALRATCTFPVLFAPVWHEKGVLVDGGVRDTTGMWCVPERRKDCRRVLNVTFGDKDGRGVCVPPSSFPTASNPRPTADDMEIVSLPLTGLPRPHPFAMERGADAMEAARSQVAAAVGLPLLAGRDDSHWIAATSFTQPPP 1517
S+ GS VS RA GD A + RSLSAWLKEGPFVLSMSPGFFGFYAHIGALIAL+ EGLL VSFATGASAGGLVAGLFAAGLSP DMGETVVKFRRSDFWDPVGFGGLLRGKKFE+IVK TLP V FDQ R+PLAVSAFD L TR+L+ GC+AQALRATCTFP LFAPVWH++GVLVDGGVRDTTGMWCVPE R+DCRR+LNVTFG ++GRGVCVPPSSFPTASNPRP D MEIVSLPL GL HPFAMERG DAMEAAR QVAAA+G PLL G SHWIAAT+ TQPPP
Sbjct: 10 SDPAGSVVS---RAGATGDGAGVVESPRSLSAWLKEGPFVLSMSPGFFGFYAHIGALIALDNEGLLNEVSFATGASAGGLVAGLFAAGLSPTDMGETVVKFRRSDFWDPVGFGGLLRGKKFEDIVKGTLPDDVRRFDQGRIPLAVSAFDVSRLMTRTLDEGCIAQALRATCTFPGLFAPVWHDRGVLVDGGVRDTTGMWCVPEERQDCRRILNVTFGSRNGRGVCVPPSSFPTASNPRPAPDGMEIVSLPLAGLXXXHPFAMERGVDAMEAARDQVAAAIGEPLLKGHGRSHWIAATTATQPPP 310
BLAST of mRNA_C-linearis_contig110.1460.1 vs. uniprot
Match: A0A835YR40_9STRA (Phospholipase A(2) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR40_9STRA) HSP 1 Score: 280 bits (715), Expect = 3.840e-75 Identity = 139/248 (56.05%), Postives = 180/248 (72.58%), Query Frame = 3
Query: 690 SLSAWL-KEGPFVLSMSPGFFGFYAHIGALIALEAEGLLEG-VSFATGASAGGLVAGLFAAGLSPADMGETVVKFRRSDFWDPVGFGGLLRGKKFEEIVKATLPPGVSCFDQCRVPLAVSAFDAFHLTTRSLERGCLAQALRATCTFPVLFAPVWHEKGVLVDGGVRDTTGMWCVPERRKDCRRVLNVTFGDKDGRGVCVPPSSFPTASNPRPTADD--MEIVSLPLTGLPRPHPFAMERGADAMEAA 1421
SL+ WL ++ + L ++PGFFGFYAHIG L AL+ GLLEG VSF +GASAG LV GL+AAGL+P++M + VV ++R DFWDP G G +LRG+ FE +++++LP GV+ FDQCR+PL V+ + TTR ++ G +A ALRA+CTFPVLF PVWH +GVL+DGGV DT GMW +P D R +LN+TFG VPPS FP S+PRP + EIVS +TG+PRPHPFAM +GA A+EAA
Sbjct: 27 SLAQWLAQQSKYALGLAPGFFGFYAHIGVLKALDEAGLLEGKVSFVSGASAGALVGGLYAAGLTPSEMAQRVVAYQRGDFWDPPGVGAMLRGRAFEGLIRSSLPEGVTTFDQCRLPLGVTGYSLSRFTTRVIQEGDIALALRASCTFPVLFQPVWHPQGVLMDGGVFDTAGMWSIPSNGDDYRCILNITFGTGPVVDQVVPPSLFPCRSHPRPPSAGGRKEIVSFAITGVPRPHPFAMHKGAAAIEAA 274
BLAST of mRNA_C-linearis_contig110.1460.1 vs. uniprot
Match: A0A0S8FKL7_9GAMM (PNPLA domain-containing protein n=1 Tax=Gammaproteobacteria bacterium SG8_31 TaxID=1703405 RepID=A0A0S8FKL7_9GAMM) HSP 1 Score: 169 bits (428), Expect = 1.380e-43 Identity = 105/267 (39.33%), Postives = 144/267 (53.93%), Query Frame = 3
Query: 690 SLSAWLKEGPFVLSMSPGFFGFYAHIGALIALEAEGLL-EGVSFATGASAGGLVAGLFAAGLSPADMGETVVKFRRSDFWDPVGFGGLLRGKKFEEIVKATLPPGVSCFDQCRVPLAVSAFDAFHLTTRSLERGCLAQALRATCTFPVLFAPVWHEKGVLVDGGVRDTTGMWCVPERRKDCRR--VLNVTFGDKDGRGVCVPPSSFPTASNPRPTADDMEIVSLPLTGLPRPHPFAMERGADAMEAARSQVAAAVGLPLLAGRDDSH 1481
+L WL+ PF L MS GFF F++H G L AL E L+ E VS G+SAG L AGL+AAGL P ++ E V R+ DFWDP GLLRG++F +++ P V + CR PL VS FD + TR L G LA+AL A+C P++F P+WH+ G L+DGG+ D G+ VP R+ + T+ +D + +P D + +L + LPRP P A+ G A AAR+ A+ P+ R D H
Sbjct: 6 TLRDWLEAEPFTLVMSSGFFSFFSHCGVLAALADESLVPEAVS---GSSAGALTAGLWAAGLEPTEIRELYVSLRKEDFWDPAPGPGLLRGRRFRTLIRRASP--VQRLEHCRRPLTVSVFDLLRMRTRVLSSGDLARALYASCAVPLMFHPLWHQGGWLIDGGLGDRPGLSGVPAGRRVFYHHIMYQSTWRRRDSADLGLP--------------DRPNLAALTIPALPRPRPDALHVGPSAWAAARTATLRALDRPVRP-RGDGH 252
BLAST of mRNA_C-linearis_contig110.1460.1 vs. uniprot
Match: A0A850BBZ6_9DELT (Patatin-like phospholipase family protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850BBZ6_9DELT) HSP 1 Score: 169 bits (427), Expect = 1.500e-43 Identity = 105/261 (40.23%), Postives = 144/261 (55.17%), Query Frame = 3
Query: 690 SLSAWLKEGPFVLSMSPGFFGFYAHIGALIALEAEGLLEGVSFATGASAGGLVAGLFAAGLSPADMGETVVKFRRSDFWDPVGFG-GLLRGKKFEEIVKATLPPGVSCFDQCRVPLAVSAFDAFHLTTRSLERGCLAQALRATCTFPVLFAPVWHEKGVLVDGGVRDTTGMWCVPERRKDCRRVLNVTFGDKDG-RGVCVPPSSFPTASNPRPTADDMEIVSLPLTGLPRPHPFAMERGADAMEAARSQVAAAVGLPLLAG 1466
+L WL+E PF L +S GFFGF+AH G + LE EGLL + G+SAG LVAG +AAG+S D+ + ++ +R FWDP GFG GLLRG+ F + + A LP FD+CR P+A+S +D TR L G L A+ A+C P+LF P W + L+DGG+ D G+ +PE R+ D+ R P P +N + SL + GLPR PF +E+GA A +AAR A+ P+ G
Sbjct: 6 TLREWLRERPFALGLSSGFFGFFAHTGVMTVLEEEGLLP--ARLAGSSAGALVAGAWAAGVSATDLRDELLALKREHFWDP-GFGLGLLRGELFRQKLGALLP--AQTFDECRAPVAISVYDVLQARTRVLTAGRLVHAICASCAVPLLFQPAWVDGRPLLDGGILDRPGITGIPEGD----RLFYHHLADRSPWRRKGSPSLEIPRRAN---------MTSLVVGGLPRVGPFRLEQGAAAFDAARKAAREALDRPIAEG 248
BLAST of mRNA_C-linearis_contig110.1460.1 vs. uniprot
Match: A0A4U1H7W2_9DELT (Patatin n=1 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1H7W2_9DELT) HSP 1 Score: 167 bits (424), Expect = 5.060e-43 Identity = 107/256 (41.80%), Postives = 138/256 (53.91%), Query Frame = 3
Query: 690 SLSAWLKEGPFVLSMSPGFFGFYAHIGALIALEAEGLLEGVSFATGASAGGLVAGLFAAGLSPADMGETVVKFRRSDFWDPVGFGGLLRGKKFEEIVKATLPPGVSCFDQCRVPLAVSAFDAFHLTTRSLERGCLAQALRATCTFPVLFAPVWHEKGVLVDGGVRDTTGMWCVPERRKDCRRVLNVTFGDKDGRGVCVPPSSFPTASNPRPTADDMEIVSLPLTGLPRPHPFAMERGADAMEAARSQVAAAVGLPL 1457
+L WL+EGPF + MS GFFGF+AH G + LE EGL + G+SAG LV GL+AAGL A + + +++ RR DFWDP GLL G F ++A LP V FDQCR PLAVS +D TR LE G LA A++A+CT P LF PVW E L+DGG+ D G+ +PE R + R P + P + +L + LPR PF + GA A E AR A+G P+
Sbjct: 17 TLREWLREGPFAIGMSSGFFGFFAHAGVMTVLEDEGLAP--ARVAGSSAGALVGGLWAAGLDAAAIRDELLRLRREDFWDPRPGLGLLAGALFRARLQALLP--VRSFDQCRAPLAVSVYDVRARGTRVLECGPLAPAIQASCTVPGLFHPVWLEGRPLLDGGILDRPGLAGMPE---GTRLFYHHLAARSPWRRRQSPALAVPERQG---------MTALVIASLPRVGPFRLPEGARAFEIARRAAREALGRPV 256
BLAST of mRNA_C-linearis_contig110.1460.1 vs. uniprot
Match: A0A4U1J9U9_9DELT (Patatin n=1 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1J9U9_9DELT) HSP 1 Score: 166 bits (420), Expect = 1.800e-42 Identity = 104/260 (40.00%), Postives = 140/260 (53.85%), Query Frame = 3
Query: 675 GKPRRSLSAWLKEGPFVLSMSPGFFGFYAHIGALIALEAEGLLEGVSFATGASAGGLVAGLFAAGLSPADMGETVVKFRRSDFWDPVGFGGLLRGKKFEEIVKATLPPGVSCFDQCRVPLAVSAFDAFHLTTRSLERGCLAQALRATCTFPVLFAPVWHEKGVLVDGGVRDTTGMWCVPERRKDCRRVLNVTFGDKDGRGVCVPPSSFPTASNPRPTADDMEIVSLPLTGLPRPHPFAMERGADAMEAARSQVAAAVGLP 1454
G+P +L WL+EGPF + +S GFFGF+AH G + LE EGL + +G+SAG LV G++AAG S + + +++ +R DFWD GLL GK F ++A LP V FD+CRVPLAVS +D F TR L G LA A++A+CT P LF PVWHE L+DGG+ D G+ +P D R + R P PT + +L + LPR PF + GA A + A A+ P
Sbjct: 12 GRPTPTLREWLREGPFSMGLSSGFFGFFAHAGVMTVLEDEGLAP--TRVSGSSAGALVGGIWAAGASAVTIRDELLRLKREDFWDMRLGPGLLAGKLFRARLEALLP--VPTFDRCRVPLAVSVYDVFARGTRVLAGGPLAPAIQASCTVPGLFHPVWHEGRPLLDGGILDRHGLAGMPA---DERLFYHHLASRSPWRKADSPSLKVPTRDG---------MTALVIEALPRVGPFRLPEGARAFDIAARATKDALSRP 255
BLAST of mRNA_C-linearis_contig110.1460.1 vs. uniprot
Match: A0A2D5EXV4_9DELT (Patatin n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5EXV4_9DELT) HSP 1 Score: 163 bits (412), Expect = 1.410e-41 Identity = 104/259 (40.15%), Postives = 140/259 (54.05%), Query Frame = 3
Query: 690 SLSAWLKEGPFVLSMSPGFFGFYAHIGALIALEAEGLLEGVSFATGASAGGLVAGLFAAGLSPADMGETVVKFRRSDFWDPVGFGGLLRGKKFEEIVKATLPPGVSCFDQCRVPLAVSAFDAFHLTTRSLERGCLAQALRATCTFPVLFAPVWHEKGVLVDGGVRDTTGMWCVPERRKDCRRVLNVTFGDKDG---RGVCVPPSSFPTASNPRPTADDMEIVSLPLTGLPRPHPFAMERGADAMEAARSQVAAAVGLPL 1457
+L WL+E PF L +S GFFGF+AH G + LE LL + G+SAG LVAG +AAGL + T ++ R DFWDP GLLRG+ F +++ TLP G F++CR P+AVS FD TR L+RG +A A+ A+C FP +F PVW ++ +DGG+ D G +P RVL G + RG + P N R ++ + GLPR PF +E+G A E AR AA+ PL
Sbjct: 5 TLREWLREEPFTLGLSSGFFGFFAHAGFVEVLEEASLLP--ARLAGSSAGALVAGCWAAGLDAPAIARTFLELERRDFWDPAPGAGLLRGRLFRGLLEETLPRGR--FEECRRPVAVSVFDVLGRRTRVLDRGPIAPAVHASCAFPGMFQPVWIDRRPYLDGGIADRPGALALPPEG----RVLYHHLGSRSPWRRRGSAA--LAIPARPNLR---------AVVVEGLPRVSPFRLEQGRVAYEHARRATRAALDRPL 244
BLAST of mRNA_C-linearis_contig110.1460.1 vs. uniprot
Match: A0A0S8EUV8_9GAMM (PNPLA domain-containing protein n=1 Tax=Gammaproteobacteria bacterium SG8_31 TaxID=1703405 RepID=A0A0S8EUV8_9GAMM) HSP 1 Score: 163 bits (412), Expect = 1.870e-41 Identity = 99/258 (38.37%), Postives = 144/258 (55.81%), Query Frame = 3
Query: 690 SLSAWLKEGPFVLSMSPGFFGFYAHIGALIALEAEGLLEGVSFATGASAGGLVAGLFAAGLSPADMGETVVKFRRSDFWDPVGFGGLLRGKKFEEIVKATLPPGVSCFDQCRVPLAVSAFDAFHLTTRSLERGCLAQALRATCTFPVLFAPVWHEKGVLVDGGVRDTTGMWCVP--ERRKDCRRVLNVTFGDKDGRGVCVPPSSFPTASNPRPTADDMEIVSLPLTGLPRPHPFAMERGADAMEAARSQVAAAVGLPL 1457
+L +WL + PF L +S GFF F+AH G L AL E L+ +G+SAG L GL+AAGL PA++ V R+ DFWDP GLLRG++F ++++ +P V + CR L+VSAFD F L TR + G LA++L A+C P +F P+WH+ G+L+DGG+RD G+ VP ER + +T+ K G +P D +++ + LP P P +++ GA A AR+ A+ PL
Sbjct: 6 TLRSWLGKEPFTLGLSSGFFSFFAHGGVLDALVEESLVPAA--VSGSSAGALTGGLWAAGLEPAEIRRLYVGLRKKDFWDPSPGPGLLRGRRFRRLIRSVIP--VQRLEHCRTRLSVSAFDLFRLRTRVMTTGDLARSLYASCAVPGMFHPLWHQGGLLLDGGIRDRPGLRGVPPGERVFYHHVMPRLTWPRKKGAFQGLP--------------DRGNLMAFLIPDLPLPGPDSLQTGAAAWAKARAATLRALDKPL 245
BLAST of mRNA_C-linearis_contig110.1460.1 vs. uniprot
Match: A0A0K1QEA1_9DELT (PNPLA domain-containing protein n=2 Tax=Labilithrix luteola TaxID=1391654 RepID=A0A0K1QEA1_9DELT) HSP 1 Score: 160 bits (406), Expect = 7.200e-41 Identity = 104/257 (40.47%), Postives = 140/257 (54.47%), Query Frame = 3
Query: 690 SLSAWLKEGPFVLSMSPGFFGFYAHIGALIALEAEGLLEGVSFATGASAGGLVAGLFAAGLSPADMGETVVKFRRSDFWDPVGFGGLLRGKKFEEIVKATLPPGVSCFDQCRVPLAVSAFDAFHLTTRSLERGCLAQALRATCTFPVLFAPVWHEKGVLVDGGVRDTTGMWCVPERRKDCRRVLNVTFGDKDG-RGVCVPPSSFPTASNPRPTADDMEIVSLPLTGLPRPHPFAMERGADAMEAARSQVAAAVGLPL 1457
+L +L EGPF L+MS GFFGF+AH G + LE EGL+ + A+G+SAG LV L+AAGL + + ++K R DFWDP G+LRG+ FE I+ LP F+ CR+P+A+S FD +T L+ G L A+RA+C P LF PVW + +DGG+ D G+ +PER RVL K RG+ P RP + +L L LPR PF +E G A AAR A+ P+
Sbjct: 2 TLREYLLEGPFALTMSSGFFGFFAHTGFMTVLEDEGLVP--TRASGSSAGALVGSLWAAGLDAPTIADELLKLERRDFWDPGLGAGVLRGRLFEGILDRVLPRRT--FETCRIPVALSVFDVLTRSTHVLDAGDLPSAIRASCAVPFLFHPVWIRRRPYLDGGILDRPGLLAMPEREP---RVLFHHLASKSPWRGMLEMPR--------RPG-----MTTLVLHDLPRSGPFKLEAGRRAYAAAREATKRALDRPI 238 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig110.1460.1 >prot_C-linearis_contig110.1460.1 ID=prot_C-linearis_contig110.1460.1|Name=mRNA_C-linearis_contig110.1460.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=699bp MNQEGAGGPATAPVHSMTLGPAKDPAAEAAAAWPSAACSGGVGTHSGGSGback to top mRNA from alignment at C-linearis_contig110:301039..307453- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig110.1460.1 ID=mRNA_C-linearis_contig110.1460.1|Name=mRNA_C-linearis_contig110.1460.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6415bp|location=Sequence derived from alignment at C-linearis_contig110:301039..307453- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig110:301039..307453- >mRNA_C-linearis_contig110.1460.1 ID=mRNA_C-linearis_contig110.1460.1|Name=mRNA_C-linearis_contig110.1460.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4194bp|location=Sequence derived from alignment at C-linearis_contig110:301039..307453- (Chordaria linearis ClinC8C monoicous)back to top |