mRNA_C-linearis_contig7.14545.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig7.14545.1 vs. uniprot
Match: A0A6H5KHR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR5_9PHAE) HSP 1 Score: 759 bits (1960), Expect = 6.800e-261 Identity = 444/618 (71.84%), Postives = 486/618 (78.64%), Query Frame = 1
Query: 550 DEEAGGTATGGVGC---GEVMMRAPKVPFCRAGADVANMWMPVWDSDSQTMVTAKRVMVFGGKGVDYYNRRVDDELTYLSDMWALHITNTGFKWNKVTPHGKVQPSPRWQTGDSVAYGSSLVVYGGDDQTTNQVGGLGDLWVYSPRGARSRLHA---DDPYDVSAKNDNWAAYARGGMHPGERREPSLTMINSTLLLQGGRVDDGESNERCDSRFFLVDLADPDGIWREGPSFPGECGLGQTMDTVNFTRGHGGGKAGESQVRAVVFGGCKWDSDGMFVCSNDLYAYSLDENRWEEIIPKSDSDSYACAADDTEGEEGPPSLRPAPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKKPVVCPGESTSRPLGRHAHASAYIESKADNVHALFIFGGRENMDDLTPLGDLWMFDFRTMRWSEITPGS-KHVPSNRFHHSLTVWQGGAGDGVASLVVFGGETITRTGQTVYMNDVWLYTPHTGAWREVSGSDCKEGATGIVGGTNWAPIVALVSLPVLVVVVQCLLHYICPIYHPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGVK--RGKSAPSLVK-QGLLASSSSNPDKPSYQALA 2373
DE G GG G MM+ P VPFCRAGADVANMWMPVW+ DSQ + TAKRV+VFGG+GVDYYN+R DD+L+YLSDMWALHITNTGF+WNKV P G V PS RWQTGDSVAYG+SLVVYGGDDQTTNQ+GGLGDLWV+SP G RSRLHA D YD + W Y+R G PGERREPSLTM+NSTLLLQGG+V+DGESNERCDSRFFLVDL DP G WREGPSFPGECG+G TM+TVN T H GE++VRAVVFGGCK DG+F CSNDLYAY L NRWEEI+PKSD+D++AC ADDT GE P+LRPA +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KK VCPG STSRPLGRHAHASAYIESK DN++ALFIFGGRENMD+LTPLGDLWMFDF TMRW EITP S K P NRF+HSLTVWQGG GDGVASLVVFGGETITRTGQTV+MNDVWLYTP TGAWR+VS SDCKEGA+GI G NW ++AL S+ VLVVVVQC LH +CP Y PPXXXXXXXXXXXXXX E G + R KS SL GLLASSSSNP+K SYQA+A
Sbjct: 75 DEAVEGEGDGGAAAVRGGSGMMQLPSVPFCRAGADVANMWMPVWNPDSQLVETAKRVVVFGGRGVDYYNKRADDQLSYLSDMWALHITNTGFRWNKVVPVGHVHPSARWQTGDSVAYGASLVVYGGDDQTTNQMGGLGDLWVFSPGGTRSRLHASEKDYSYDSLDRRSEWTEYSRAGKLPGERREPSLTMVNSTLLLQGGKVEDGESNERCDSRFFLVDLGDPQGKWREGPSFPGECGIGGTMNTVNITSKHT--TDGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDT-GES--PALRPA--AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDKKKAVCPGVSTSRPLGRHAHASAYIESKTDNMNALFIFGGRENMDELTPLGDLWMFDFTTMRWREITPDSNKPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWRQVSRSDCKEGASGIARGGNWTALIALASMLVLVVVVQCFLHRVCPQYQPPXXXXXXXXXXXXXXGNATGGASAR--------------EGGAEATRSKSVSSLQDTHGLLASSSSNPEKHSYQAVA 671
BLAST of mRNA_C-linearis_contig7.14545.1 vs. uniprot
Match: D7G1X6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X6_ECTSI) HSP 1 Score: 657 bits (1694), Expect = 6.440e-225 Identity = 325/477 (68.13%), Postives = 358/477 (75.05%), Query Frame = 1
Query: 601 MMRAPKVPFCRAGADVANMWMPVWDSDSQTMVTAKRVMVFGGKGVDYYNRRVDDELTYLSDMWALHITNTGFKWNKVTPHGKVQPSPRWQTGDSVAYGSSLVVYGGDDQTTNQVGGLGDLWVYSPRGARSRLHA---DDPYDVSAKNDNWAAYARGGMHPGERREPSLTMINSTLLLQGGRVDDGESNERCDSRFFLVDLADPDGIWREGPSFPGECGLGQTMDTVNFTRGHGGGKAGESQVRAVVFGGCKWDSDGMFVCSNDLYAYSLDENRWEEIIPKSDSDSYACAADDTEGEEGPPSLRPAPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKKPVVCPGESTSRPLGRHAHASAYIESKADNVHALFIFGGRENMDDLTPLGDLWMFDFRTMRWSEITPGSKH-VPSNRFHHSLTVWQGGAGDGVASLVVFGGETITRTGQTVYMNDVWLYTPHTGAWREVSGS 2019
MM+ P+VPFCRAGADVANMWMPVW+ DSQ + TAKRV+VFGG+GVDYY++R DD+L+YLSDMWALHITNTGF+WNKV P G+V+PS RWQTGDSVAYG+SLVVYGGDDQTTNQVGGLGDLWV+SPRG+RSRLHA D YD S + W Y R G PGERREPSL M+NSTLLLQGG+++DGESNERCDSRFFLVDL DP G WREGPSFPGECG+G TMDTVN TR H GE++VRAVVFGGCK DG+F CSNDLYAY L NRWEEI+PKSD+D++AC ADDT GES P RH HASAYIESK DN++ALFIFGGRENMDDLTPLGDLWMFDF TMRWSEITP SK P NRF+HSLTVWQGG GDGVASLVVFGGETITRTGQTV+MNDVWLYTP TGAWREV S
Sbjct: 1 MMQLPRVPFCRAGADVANMWMPVWNPDSQLVETAKRVVVFGGRGVDYYDKRADDQLSYLSDMWALHITNTGFRWNKVVPIGQVRPSARWQTGDSVAYGASLVVYGGDDQTTNQVGGLGDLWVFSPRGSRSRLHASEKDYSYDASDRRSEWTEYRRTGKLPGERREPSLAMVNSTLLLQGGKMEDGESNERCDSRFFLVDLGDPQGEWREGPSFPGECGIGGTMDTVNITRKHTAD--GENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDT----------------------------------------------------------GES---PALRHGHASAYIESKTDNMNALFIFGGRENMDDLTPLGDLWMFDFTTMRWSEITPDSKKPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREVRSS 414
BLAST of mRNA_C-linearis_contig7.14545.1 vs. uniprot
Match: A0A835ZEU9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEU9_9STRA) HSP 1 Score: 133 bits (334), Expect = 2.630e-28 Identity = 104/377 (27.59%), Postives = 147/377 (38.99%), Query Frame = 1
Query: 1069 PGERREPSLTMINS-TLLLQGGRVDDGESNERCDSRFFLVDLADPDGIWREGPSFPGECGLGQTMDTV----NFTRGHGG----------------------------GKAGESQVRA-----------------VVFGGCKWDSDGMFVCSNDLYAYSLDENRWEEIIPKSDSDSYACAADDTEGEEGPPSLRPAPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKKPVVCPGESTSRPLGRHAHASAYIESKADNVHALFIFGGRENMDDLTPLGDLWMFDFRTMRWSEITPGSKHVPSNRFHHSLTVWQGGAGDGVASLVVFGGETITRTGQTVYMNDVWLYTPHTGAWREVSGSDCKEGATGIV 2049
PG+RR + + + ++L G+ +GE CDS+ F DL + + W S P C GQTM V N T G G A + RA V+FGG ++ G + NDL+AY + WE + P+ + + + A++ E ++ RP R H + Y+E +H+LFI GGR + + L D+W F+F+T RW + S PS RF H LT W+G AGDG L + GGE I +G +NDVWLY AWR+V SDC GATGI+
Sbjct: 225 PGQRRGQGMAVSSGGVVVLASGK--NGEGELECDSKVFAFDLTEANATWATKTSLPAPCRWGQTMTRVITYPNTTTNSTGISGXXXXXXXXXXXXXXXXXXXXXAQPDGAAQKGAARALKASQKGEHPVHGTEKLVLFGGRRYQGSG-YKYFNDLWAYDPVTDTWELLTPEVEENMHGVASEADALET---------------------------------------------YEQAXXXXXXXQVPRP--RDHHGAVYVEE----LHSLFIHGGRWTDEMVPALDDIWSFNFKTRRWKQHAQVSTKRPSPRFGHGLTAWRGSAGDGSPGLALVGGEVINSSGHHDLLNDVWLYAIADSAWRKVGRSDCSPGATGII 547
BLAST of mRNA_C-linearis_contig7.14545.1 vs. uniprot
Match: UPI00192F711E (multiple epidermal growth factor-like domains protein 8 n=1 Tax=Crotalus tigris TaxID=88082 RepID=UPI00192F711E) HSP 1 Score: 63.9 bits (154), Expect = 2.250e-6 Identity = 44/129 (34.11%), Postives = 63/129 (48.84%), Query Frame = 1
Query: 1672 RHAHASAYIESKADNVHALFIFGGRENMDDLTPLGDLWMFDFRTMRWSE--ITPGSKHVPSNRFHHSLTVWQGGAGDGVASLVVFGGETITRTGQTVYMNDVWLYTPHTGAWREVSGSDCKEGATGIVG 2052
R A A A++ S L+IFGG +D T LGDL ++F T W + ++P P+ R H+ W+G SL++FGGE T NDVW+Y P G WRE+ + + G+ G
Sbjct: 228 RTAAAGAFLPSTG----GLYIFGG---LDLNTALGDLVFYNFTTNTWHQRVLSPS----PTARHSHTAVAWEG-------SLILFGGELSTG----FLTNDVWMYLPREGYWRELVPVNTTKFPPGLAG 334 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14545.1 >prot_C-linearis_contig7.14545.1 ID=prot_C-linearis_contig7.14545.1|Name=mRNA_C-linearis_contig7.14545.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=717bp MKKRQRKPSSLLRDRDQERRHRQSRSSGGGGGSSGLVAGALALACALLAPback to top mRNA from alignment at C-linearis_contig7:3041697..3053250- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14545.1 ID=mRNA_C-linearis_contig7.14545.1|Name=mRNA_C-linearis_contig7.14545.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11554bp|location=Sequence derived from alignment at C-linearis_contig7:3041697..3053250- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:3041697..3053250- >mRNA_C-linearis_contig7.14545.1 ID=mRNA_C-linearis_contig7.14545.1|Name=mRNA_C-linearis_contig7.14545.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4302bp|location=Sequence derived from alignment at C-linearis_contig7:3041697..3053250- (Chordaria linearis ClinC8C monoicous)back to top |