mRNA_C-linearis_contig7.14447.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14447.1
Unique NamemRNA_C-linearis_contig7.14447.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig7.14447.1 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.950e-22
Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   37 PVPEGWLFPCIVIAAAWSPWSGNCPLQWNTLVASDGKAPATMKGDKIASGRLSSPGT**AESTSARQMENDNG 255
            PVP+GW  P I+IAAAWSPW GNCP QW  L ASDGKAP   KGD+IASG LSSPG     + SAR+MEN+NG
Sbjct:  400 PVPDGWFHPYIIIAAAWSPWGGNCPTQWQNLSASDGKAPTNKKGDQIASGPLSSPGALAESTASARKMENNNG 472
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BLAST of mRNA_C-linearis_contig7.14447.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 9.490e-5
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   40 VPEGWLFPCIVIAAAWSPWSGNCPLQWNTLVASDGKAPATMKGD 171
            VPE W+FP +++ AA+SPWSG  P +W  L +SDG +     GD
Sbjct:  118 VPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGD 161
[Close]
BLAST of mRNA_C-linearis_contig7.14447.1 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 9.500e-5
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   40 VPEGWLFPCIVIAAAWSPWSGNCPLQWNTLVASDGKAPATMKGD 171
            VPE W+FP +++ AA+SPWSG  P +W  L +SDG +     GD
Sbjct:  118 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGD 161
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KAW6_9PHAE2.950e-2267.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF1_9PHAE9.490e-547.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDD8_9PHAE9.500e-547.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:1964939..1968177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size935
Cds size210
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14447.1prot_C-linearis_contig7.14447.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 1964939..1965148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930302.4348252-CDS-C-linearis_contig7:1964938..19651481622930302.4348252-CDS-C-linearis_contig7:1964938..1965148Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1964939..1965148 +
1690881001.6509712-CDS-C-linearis_contig7:1964938..19651481690881001.6509712-CDS-C-linearis_contig7:1964938..1965148Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1964939..1965148 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930302.4563878-UTR-C-linearis_contig7:1965148..19655581622930302.4563878-UTR-C-linearis_contig7:1965148..1965558Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 1965149..1965558 +
1690881001.6613505-UTR-C-linearis_contig7:1965148..19655581690881001.6613505-UTR-C-linearis_contig7:1965148..1965558Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 1965149..1965558 +
1622930302.4838471-UTR-C-linearis_contig7:1967476..19676341622930302.4838471-UTR-C-linearis_contig7:1967476..1967634Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 1967477..1967634 +
1690881001.6738288-UTR-C-linearis_contig7:1967476..19676341690881001.6738288-UTR-C-linearis_contig7:1967476..1967634Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 1967477..1967634 +
1622930302.5082543-UTR-C-linearis_contig7:1968022..19681771622930302.5082543-UTR-C-linearis_contig7:1968022..1968177Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 1968023..1968177 +
1690881001.6885374-UTR-C-linearis_contig7:1968022..19681771690881001.6885374-UTR-C-linearis_contig7:1968022..1968177Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 1968023..1968177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14447.1

>prot_C-linearis_contig7.14447.1 ID=prot_C-linearis_contig7.14447.1|Name=mRNA_C-linearis_contig7.14447.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=70bp
GSSRGAENAGKAPVPEGWLFPCIVIAAAWSPWSGNCPLQWNTLVASDGKA
PATMKGDKIASGRLSSPGT*
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mRNA from alignment at C-linearis_contig7:1964939..1968177+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14447.1 ID=mRNA_C-linearis_contig7.14447.1|Name=mRNA_C-linearis_contig7.14447.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3239bp|location=Sequence derived from alignment at C-linearis_contig7:1964939..1968177+ (Chordaria linearis ClinC8C monoicous)
GGGAGTTCTCGTGGCGCAGAGAATGCGGGTAAAGCACCGGTGCCTGAGGG
GTGGTTGTTCCCGTGCATCGTCATAGCTGCTGCGTGGTCTCCCTGGAGCG
GGAACTGCCCCCTACAGTGGAATACCCTCGTTGCGTCTGATGGCAAAGCT
CCCGCGACCATGAAGGGCGACAAGATCGCATCCGGTCGTCTTTCAAGCCC
GGGAACATAATAGGCTGAATCGACTTCGGCACGTCAGATGGAAAACGACA
ACGGCATACATACCCACGAGTCGTCGTGCGGCCCAAACAGCGATTAAGGC
GGAGGCTGACCGGGTTCGCAGAGAGAAGAAGGACAAGGAAAACCAGGCAC
GTGACGAGGCCATGGCGAACCTTAGGAGGGAGGGGGTGAAAGCTATGAAA
GAGGCGAACGAGAACTCGAAGAAACTGGCGGCGTCGATGGGGGAGTAGGT
GACTTTCAAGAGGAATGCGGACGAGCGGGAGAAGGCGGGTTCGGAGGTGG
CGAAGAGAGCCCGAAAGGTCGAAGCTGTGGAGAAACGGATGATGCTCATG
TTGCCAGGTCCACAGACAGGACCGCTCTCAAAGAGAAGCTGGCGCAGCTG
CTAGACGAAGAGGTGGAGGGGTGAGAAGGGACTCATTCTTTTTTGGGTGG
GGGTGATGCTAATGTTTTGTTGGAGTTTGCCTTGTTGAAAACCGCAACAC
CTGTTTGGTTTTTGTTGTTGGCTGGGATATACAAGTATTATTATTGTTCG
AGGTGCTAGAGAGGGGAGGGAGGGGGGGGCACAGAAGAAAGTGTATACAC
TTGTGGTGCACCTTCTTTTTTGCGTCCACCCAAATCCACACTGATCACTA
GTCGTGGAACGCTGAATACATAATAATACATGTTTTAATTTCTTGATTGT
GCGGTGTGTGTCGTGAGAAACACAGCGGTGTATCGACGAGAGCAAAACAC
CTCAACTCAGTGTCATAGGCTGCCATGCCCAGCGAATCCACTGTTCACCG
CAAACAGTGGATAAGTTGTCATCTAACAAAAAAAGTACAAGGGGTTCGAA
CCTCTCCGCGACCATTTTGACGCCTTTTTCTGCAAAAAGAAAATTTGTGA
AAAAAGTCTGGGATACACACCTGAAAGTCATGGTATACATCATCACCAGT
CGTCAAGATGAAGACACTTATCCCCGCCTGTAAGCCGATGAACCGCTTGG
AGCAGCGCTGATTGGAGGGATTATAACCCTCGGGTGAATACCGGAGTCCA
ACAGCCTTACCAGCTGGTCGGACCCCGGTTGTACATCTAACAGATGATGA
CAAGATATCCACTGAGCTAGTCAAGCAGTCAGCGCTGACTGCTTAGCTCA
GTAGGATATCTTGTCTAACACCATATACTGGAATTGAAATTCATGGAATT
GAAATTCAATATGGAGTTGAAAGGCTGTGTGCAAGAGGCCTGGAGAGGGC
TGGATGGAGTGTGCGGGAGGGATGGCGTTGTCAGGAGGGTCAGTTTTTTT
AGCGGGCAGTGGCGAGTGATGGACATATCGGGAGATAGGTGCTGCTTGTA
GTGATACATTAAGTTTAGGCTCCACTTCCTGACAACTTTCAACTCAACTT
GGAAATGAAGAAGAGCGCCGGAGTGTGCGGGAAGGATGGCGGTTGTCAGT
TAGTCAGGTTTTAGCGGGCTCGTGATACATGGGAGGTTGTGGCGCTATGT
AGTGGTACATGAAATTCAATTCCTGGCATTGAATTTTCAATTCCTGGAAT
AGAAATTCAATTTGAAATTGAAGAAGAGCGCTGGAGTGTGCGGGAGGGCT
GTCGGTTGGCGCAATAAGGTGGAGATACTTGGTGATGTACAGAGAGGTGG
TGTGGTGGGAGGAAGGGGTGGGAGGGGCGGTGGCGCTTTGTAATGATGTA
TCAAGTTTCAGTTCTTGGAATTGAAGTTCAGGTCCTGGAATTGAATCTCA
GTTCCTAGATTATCGAAGTTTATAAACAACACGCCAAGACCCCAGGAGGC
CGAAGCCCCAAAATCTTTATGCACTAGATACATCCCATGTGTTTTAATTG
AGTTTACTTAATGAGCTTAGAGTAGGAATTGGTCACTTTCATTTATTATG
CTTGTGACTTTCCCAATACTTTCAAAACGCTGTATATCTGCAGGGGACGA
GGGGCGAGTTCCGGTCGGCAAGTTGACTAACTATTCTTACTTCCTGGGGC
GCAATTCATTGCTGCAGGAGTGGCTGCGAAACCTTGCAGCTACTACACAA
AACTTGACTGGGATACGTGAAAGCGAGCGGATGCCGTGTACCATGCGCAG
AAGAAGTAGGCTATATTGAGAGACAGAGCAACTATTTTGTGCCAGGCACC
AGCTATATTTGCGCGCGTTGTGAGTCGTGTGTCGTGAAATTCTAACCCTC
CCTGCCGATCAAATACACCAACCACACCTTAGACTGCCAACCAAGTTTGG
ACTACAATAATGGCGCTATACTTCGTTTACCGTTTTGGCCACACCCCCTT
TCGTTTGCCGCCCCGGGAACGTACCGATTTCCCCGCAGGCAGGCTGGGAT
CTGGACCGAGATTTGCGAGATGTGGAGGGGTCTCGTCGAATACATAATAC
ATGGCAGACGCGCATGGAACTTCCTGGATGCACTTGGTCTCGCGGTTTCT
CTAGGCGGTTTTCGTGTCCGATCCGTTTACCCGGAGAGTCCGTGAGGTGA
GTCTCTATGTCCTGAGTGCCCCACTTTTTTTGGTGTCACGTGTGTGTGCT
CTTGTCTGCTTTTTCTCGGATCAATGACCCAGGAAAATGGCCGCGATCAT
CCGTGATCTCACCTGTTTGCTCACCATGCTGATTTCGAGCCATCGCGAGG
CATTCGTCACCTCGGACCAACCTTCGGTTGCGTTCAACAACCCAATATTT
TTGTAGTAATAATGGTGTCCAAAATATTTCATAATTCGAAGTATTATATA
TTCTGTCGACTATATATTATGTATGGTGTATTGATCGGATACTACACGTT
TTTCGGAGTCCCTATTATACTGCTGTAGGCTTCTTTCTCATTATACGATG
ACTTGCCATTGATAATGAACTTGTTACCGTGCAGATTATTTTCCTGATGA
TGCGGGAAATGGTCAAGTTTGCCATCGTACTGCTGGTGGTGGTGATCCTG
GGGTCCACCTTGTCCTTTCACGCCCTCTCTTCCGCGGCGATGGCACGTCC
GCAGAACAAGCCTCAATCTCTTCCAAGCCATGTTGGGCG
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Coding sequence (CDS) from alignment at C-linearis_contig7:1964939..1968177+

>mRNA_C-linearis_contig7.14447.1 ID=mRNA_C-linearis_contig7.14447.1|Name=mRNA_C-linearis_contig7.14447.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at C-linearis_contig7:1964939..1968177+ (Chordaria linearis ClinC8C monoicous)
GGGAGTTCTCGTGGCGCAGAGAATGCGGGTAAAGCACCGGTGCCTGAGGG
GTGGTTGTTCCCGTGCATCGTCATAGCTGCTGCGTGGTCTCCCTGGAGCG
GGAACTGCCCCCTACAGTGGAATACCCTCGTTGCGTCTGATGGCAAAGCT
CCCGCGACCATGAAGGGCGACAAGATCGCATCCGGTCGTCTTTCAAGCCC
GGGAACATAAGGGAGTTCTCGTGGCGCAGAGAATGCGGGTAAAGCACCGG
TGCCTGAGGGGTGGTTGTTCCCGTGCATCGTCATAGCTGCTGCGTGGTCT
CCCTGGAGCGGGAACTGCCCCCTACAGTGGAATACCCTCGTTGCGTCTGA
TGGCAAAGCTCCCGCGACCATGAAGGGCGACAAGATCGCATCCGGTCGTC
TTTCAAGCCCGGGAACATAA
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