prot_C-linearis_contig7.14446.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14446.1
Unique Nameprot_C-linearis_contig7.14446.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length647
Homology
BLAST of mRNA_C-linearis_contig7.14446.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI)

HSP 1 Score: 521 bits (1343), Expect = 2.950e-175
Identity = 296/391 (75.70%), Postives = 319/391 (81.59%), Query Frame = 0
Query:   83 GDKSRSLAALGLSQSRGGGTFSGSYERLPSWG-----------EVEAGAAGGSSVVPRSISVNSDGGGYGAAGTXXXXXXXXAAPGTDPWTWTVGSAAGAPLAFKHASKTDVAGAAAAGG-GFAGNNWFLSIEDRRILKRRTILARFTPIVLLSSFVGDLDLITDWTFLHYGLAEQGYVIRKLALFFAIVGTVMWALSVTEFSLMSKLKNMWKSNPLSRLQHVGLGWQLLANVFLEDLPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGVSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWTNRCSTGEQKAAAVFQVLQMDPTFVNGDLEYMRADLLTGSRLYITSCDLTGPIPGELGKLTKLTVLDLSAN 461
            GDKSR+LA LGLS S+GGGTFSGSY+RLPSWG                  GG   VPRS+S+NSDGGG+GA GTXXXXXXXXAA        T  S    P   + A      G  A+GG G  G++WFLS +DR++LKRRTIL+R TPIVLLSSFVGDLDLITDWTFL YGLA QG++IRKLALFFAIVGTVMWALS TEFSLMSKLKNMWK NPLSRLQHVGLGWQLLANVFLED+PQFIITVITRPTSVTGVLNLCASGLSLCAKIVHG SSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAW NRCSTGEQKAAAVFQVLQMDPTFV GDLEYMRADL +GSRLYIT+  LTGPIP ++G +T L  + LS N
Sbjct:   27 GDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXXXXXDGGD--VPRSLSINSDGGGFGA-GTXXXXXXXXAAA-------TARSTELGPAIKRRAPGKTSRGLGASGGRGSGGHSWFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTGPIPSQVGDMTILRAVVLSGN 407          
BLAST of mRNA_C-linearis_contig7.14446.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE)

HSP 1 Score: 421 bits (1082), Expect = 1.250e-139
Identity = 256/393 (65.14%), Postives = 292/393 (74.30%), Query Frame = 0
Query:    1 MLYILFLGVLYKLEGGRFRSFFRALMGYDVKADMTPTTPSGSGXXXXKMAKKKPTVVAGYVSDGAASDGSAPGDFGAPTSTVGDKSRSLAALGLSQSRGGGTFSGSYERLPSWG---------EVEAGAAGGSSVVPRSISVNSDGGGYGAAGTXXXXXXXXAAPGTDPWTWTVGSAAGAPLAFKHASKTDVAGAAAAGG-GFAGNNWFLSIEDRRILKRRTILARFTPIVLLSSFVGDLDLITDWTFLHYGLAEQG-----------YVIRKLALFFAIVGTVMWALSVTEFSLMSKLKNMWKSNPLSRLQHVGLGWQLLANVFLEDLPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGVSSQRAPSLSTQFKMIDQDPAVTRNLFKLR 372
            M+Y++FL  LYKL+GGRFRSF RA++G+DV+ADMTPT+ + S      ++K     VAGY+SDGAASD SAPG+  A  + +GDKSR+LA LGLS S+GGGTFSGSY+RLPSWG                GG   VPRS+S+NSDGGG+  AGT XXXXXXX          T  S    P   + A      G  A+G  G  G++W+LS +DR++LKRRTIL+R TPIVLLSSFVGDLDLITDW FL YGLA QG           ++IRKLALFFAIVGTVMWALS TEFSLMSKLKNMWK      LQHVGLGWQLLANVFLED+PQFIITVITRPTSVTGVLNLCASGLSLCAKI+HG+SSQRAPSLSTQFKMIDQDPAVTRNLFKLR
Sbjct:    1 MMYLVFLAFLYKLQGGRFRSFVRAVLGHDVEADMTPTSHNASDEKG--VSKPVKPAVAGYISDGAASDVSAPGEPAA--AALGDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXXXDGGD--VPRSLSINSDGGGF-EAGTRXXXXXXXXXA-------TARSTELGPAIKRRAPGKTSRGLGASGARGSGGHSWYLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKV-----LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 374          
BLAST of mRNA_C-linearis_contig7.14446.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 2.510e-43
Identity = 109/265 (41.13%), Postives = 152/265 (57.36%), Query Frame = 0
Query:  194 AGNNWFLSIEDRRILKRRTILARFTPIVLLSSFVGDLDLITDWTFLHYGLAEQGYVIRKLALFFAIVGTVMWALSVTEFSLMSKLKNMW--KSNPLSRLQHVGLGWQLLANVFLEDLPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGVSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLA----WTNRCSTGEQKA----AAVFQVLQMDPTFVNGDLEYMRADLLTGSRLYITSCDLTGPIPGELG 448
            AG N   S + RR LKR  I  + TP+ +L+S V DLDL  DW FL  GL +   ++  +A    +VGTVM+ L   EF  +S+    W  +   LS LQHV LGWQLL NV +ED+PQ +IT +T PTSV GVLN+  +G +L AK+  G +++    +S+Q +MID DP V ++L   R +A++ A  A  L  L       N     E+ +    A  FQV+Q+DP F+NG+L Y+R + L  SRL +    L G +P  LG
Sbjct:  114 AGGN---SEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWT-WCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIR-EKLEVSRLNLGRFGLKGSLPPSLG 373          
BLAST of mRNA_C-linearis_contig7.14446.1 vs. uniprot
Match: A0A6H5JP38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP38_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.090e-20
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 0
Query:  385 LVYLAWTNRCSTGEQKAAAVFQVLQMDPTFVNGDLEYMRADLLTGSRLYITSCDLT 440
            +V L  T RCSTGEQKAAAVFQVLQMDPTFV GDLEYMRADL +GSRLYITSC LT
Sbjct:    1 MVPLHDTGRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITSCSLT 56          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14446.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G1J8_ECTSI2.950e-17575.70Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JNU7_9PHAE1.250e-13965.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK13_ECTSI2.510e-4341.13Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A6H5JP38_9PHAE4.090e-2083.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 522..535
score: 56.42
coord: 453..466
score: 53.99
NoneNo IPR availablePANTHERPTHR45974:SF95coord: 502..585
NoneNo IPR availablePANTHERPTHR45974FAMILY NOT NAMEDcoord: 502..585
coord: 480..556
NoneNo IPR availablePANTHERPTHR45974FAMILY NOT NAMEDcoord: 432..531
NoneNo IPR availablePANTHERPTHR45974:SF95coord: 480..556
coord: 432..531
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 253..274
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..212
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 275..646
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 213..233
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 234..252
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 431..586
NoneNo IPR availableTMHMMTMhelixcoord: 253..275
NoneNo IPR availableTMHMMTMhelixcoord: 183..202
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 416..597
e-value: 7.2E-47
score: 161.9
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 524..543
e-value: 0.28
score: 11.9
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 476..499
score: 5.933
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 452..473
score: 6.072
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 524..546
score: 7.296

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:1933553..1945524 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14446.1mRNA_C-linearis_contig7.14446.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 1931514..1947364 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14446.1 ID=prot_C-linearis_contig7.14446.1|Name=mRNA_C-linearis_contig7.14446.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=647bp
MLYILFLGVLYKLEGGRFRSFFRALMGYDVKADMTPTTPSGSGGGGGKMA
KKKPTVVAGYVSDGAASDGSAPGDFGAPTSTVGDKSRSLAALGLSQSRGG
GTFSGSYERLPSWGEVEAGAAGGSSVVPRSISVNSDGGGYGAAGTRSLSV
NSDAAPGTDPWTWTVGSAAGAPLAFKHASKTDVAGAAAAGGGFAGNNWFL
SIEDRRILKRRTILARFTPIVLLSSFVGDLDLITDWTFLHYGLAEQGYVI
RKLALFFAIVGTVMWALSVTEFSLMSKLKNMWKSNPLSRLQHVGLGWQLL
ANVFLEDLPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGVSSQRAPS
LSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWTNRCSTGEQK
AAAVFQVLQMDPTFVNGDLEYMRADLLTGSRLYITSCDLTGPIPGELGKL
TKLTVLDLSANTLSGPIPLELAQLGSLTVLNLSKNALTGPIPVELSGLQL
LTKMILAENQLTGPIPRELNKLASLQELDLSHNQLTGPIPPILGKRLTNL
LSLSVGNNLLTGRVPMSLAKPTQLKSLVVGNNMLTAAAETEEELKPHLHP
ECVTDFLPQEAPGEQEQEGEEEEEEKEPAEDEEGDGEGDEQTHLFV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt