mRNA_C-linearis_contig7.14446.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig7.14446.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI) HSP 1 Score: 521 bits (1343), Expect = 2.020e-166 Identity = 296/391 (75.70%), Postives = 319/391 (81.59%), Query Frame = 3
Query: 438 GDKSRSLAALGLSQSRGGGTFSGSYERLPSWG-----------EVEAGAAGGSSVVPRSISVNSDGGGYGAAGTXXXXXXXXAAPGTDPWTWTVGSAAGAPLAFKHASKTDVAGAAAAGG-GFAGNNWFLSIEDRRILKRRTILARFTPIVLLSSFVGDLDLITDWTFLHYGLAEQGYVIRKLALFFAIVGTVMWALSVTEFSLMSKLKNMWKSNPLSRLQHVGLGWQLLANVFLEDLPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGVSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWTNRCSTGEQKAAAVFQVLQMDPTFVNGDLEYMRADLLTGSRLYITSCDLTGPIPGELGKLTKLTVLDLSAN 1574
GDKSR+LA LGLS S+GGGTFSGSY+RLPSWG GG VPRS+S+NSDGGG+GA GTXXXXXXXXAA T S P + A G A+GG G G++WFLS +DR++LKRRTIL+R TPIVLLSSFVGDLDLITDWTFL YGLA QG++IRKLALFFAIVGTVMWALS TEFSLMSKLKNMWK NPLSRLQHVGLGWQLLANVFLED+PQFIITVITRPTSVTGVLNLCASGLSLCAKIVHG SSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAW NRCSTGEQKAAAVFQVLQMDPTFV GDLEYMRADL +GSRLYIT+ LTGPIP ++G +T L + LS N
Sbjct: 27 GDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXXXXXDGGD--VPRSLSINSDGGGFGA-GTXXXXXXXXAAA-------TARSTELGPAIKRRAPGKTSRGLGASGGRGSGGHSWFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTGPIPSQVGDMTILRAVVLSGN 407
BLAST of mRNA_C-linearis_contig7.14446.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE) HSP 1 Score: 423 bits (1088), Expect = 5.640e-133 Identity = 256/393 (65.14%), Postives = 292/393 (74.30%), Query Frame = 3
Query: 192 MLYILFLGVLYKLEGGRFRSFFRALMGYDVKADMTPTTPSGSGXXXXKMAKKKPTVVAGYVSDGAASDGSAPGDFGAPTSTVGDKSRSLAALGLSQSRGGGTFSGSYERLPSWG---------EVEAGAAGGSSVVPRSISVNSDGGGYGAAGTXXXXXXXXAAPGTDPWTWTVGSAAGAPLAFKHASKTDVAGAAAAGG-GFAGNNWFLSIEDRRILKRRTILARFTPIVLLSSFVGDLDLITDWTFLHYGLAEQG-----------YVIRKLALFFAIVGTVMWALSVTEFSLMSKLKNMWKSNPLSRLQHVGLGWQLLANVFLEDLPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGVSSQRAPSLSTQFKMIDQDPAVTRNLFKLR 1307
M+Y++FL LYKL+GGRFRSF RA++G+DV+ADMTPT+ + S ++K VAGY+SDGAASD SAPG+ A + +GDKSR+LA LGLS S+GGGTFSGSY+RLPSWG GG VPRS+S+NSDGGG+ AGT XXXXXXX T S P + A G A+G G G++W+LS +DR++LKRRTIL+R TPIVLLSSFVGDLDLITDW FL YGLA QG ++IRKLALFFAIVGTVMWALS TEFSLMSKLKNMWK LQHVGLGWQLLANVFLED+PQFIITVITRPTSVTGVLNLCASGLSLCAKI+HG+SSQRAPSLSTQFKMIDQDPAVTRNLFKLR
Sbjct: 1 MMYLVFLAFLYKLQGGRFRSFVRAVLGHDVEADMTPTSHNASDEKG--VSKPVKPAVAGYISDGAASDVSAPGEPAA--AALGDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXXXDGGD--VPRSLSINSDGGGF-EAGTRXXXXXXXXXA-------TARSTELGPAIKRRAPGKTSRGLGASGARGSGGHSWYLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKV-----LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 374
BLAST of mRNA_C-linearis_contig7.14446.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI) HSP 1 Score: 173 bits (439), Expect = 4.790e-42 Identity = 109/265 (41.13%), Postives = 152/265 (57.36%), Query Frame = 3
Query: 771 AGNNWFLSIEDRRILKRRTILARFTPIVLLSSFVGDLDLITDWTFLHYGLAEQGYVIRKLALFFAIVGTVMWALSVTEFSLMSKLKNMW--KSNPLSRLQHVGLGWQLLANVFLEDLPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGVSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLA----WTNRCSTGEQKA----AAVFQVLQMDPTFVNGDLEYMRADLLTGSRLYITSCDLTGPIPGELG 1535
AG N S + RR LKR I + TP+ +L+S V DLDL DW FL GL + ++ +A +VGTVM+ L EF +S+ W + LS LQHV LGWQLL NV +ED+PQ +IT +T PTSV GVLN+ +G +L AK+ G +++ +S+Q +MID DP V ++L R +A++ A A L L N E+ + A FQV+Q+DP F+NG+L Y+R + L SRL + L G +P LG
Sbjct: 114 AGGN---SEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWT-WCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIR-EKLEVSRLNLGRFGLKGSLPPSLG 373
BLAST of mRNA_C-linearis_contig7.14446.1 vs. uniprot
Match: A0A6H5JP38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP38_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 8.850e-20 Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 3
Query: 1344 LVYLAWTNRCSTGEQKAAAVFQVLQMDPTFVNGDLEYMRADLLTGSRLYITSCDLT 1511
+V L T RCSTGEQKAAAVFQVLQMDPTFV GDLEYMRADL +GSRLYITSC LT
Sbjct: 1 MVPLHDTGRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITSCSLT 56 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14446.1 >prot_C-linearis_contig7.14446.1 ID=prot_C-linearis_contig7.14446.1|Name=mRNA_C-linearis_contig7.14446.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=647bp MLYILFLGVLYKLEGGRFRSFFRALMGYDVKADMTPTTPSGSGGGGGKMAback to top mRNA from alignment at C-linearis_contig7:1931514..1947364- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14446.1 ID=mRNA_C-linearis_contig7.14446.1|Name=mRNA_C-linearis_contig7.14446.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=15851bp|location=Sequence derived from alignment at C-linearis_contig7:1931514..1947364- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:1931514..1947364- >mRNA_C-linearis_contig7.14446.1 ID=mRNA_C-linearis_contig7.14446.1|Name=mRNA_C-linearis_contig7.14446.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3882bp|location=Sequence derived from alignment at C-linearis_contig7:1931514..1947364- (Chordaria linearis ClinC8C monoicous)back to top |