prot_C-linearis_contig7.14429.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14429.1
Unique Nameprot_C-linearis_contig7.14429.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length603
Homology
BLAST of mRNA_C-linearis_contig7.14429.1 vs. uniprot
Match: D7G1J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J1_ECTSI)

HSP 1 Score: 560 bits (1444), Expect = 4.800e-193
Identity = 345/603 (57.21%), Postives = 393/603 (65.17%), Query Frame = 0
Query:   11 APPKVVLRNAAVQAVGERYFQVSLAGLVVAGVLAIVAVSIGSRRGLFEFRIDRCDCLLSSSAQEAVDEGRECVFGQNMLGVNIGWKRFVIDDANSLEGCLDGWEGTTDIGSPFGDGIYKKKSAVYGNGATGAADASVGLFVVSAFMCIVMYKTVQMSYVGPGSIYSIGLHNIAMMCFLLSIASAISVAAFWGRVQGKIGNLRDSLAATLFKATLDVCEDDWDTVGFPTGE---DEVFCEAAPWSFDVPLYAGWTAIAHVAVMFLTSIWLLSKSAFVEGILDGSRLSDGKSVAPRVVEFENAVGRALATTEDPDYDVPDNKLYTGEQKIMIRPYPLPGTAKAVMKAAEALVSPLRKMSRKRRLGCRTHTTTRPTPSRREPAGVLRPRAAFSSPLSAAEFDGSQGLPSPGPVRPLPKSTSSPSKAAAXXXXXXXXXXXXXXXXXXXXSKGDSSPRDDDQGTDKPGHKGSRS-SAREGEFGFDDGDGLDGGDXXXXXXXXXXXXXXXDGRRHEKNRSEIDWTSIMGAG-------QHEEGGXXXXXXXGSPGLSAGMLGGVDMIFQGPSVKDGLTLGAITEDPHEDMVSEFTMSPRKKGSQTHFDV 602
            APPK+ +RN AVQAVGE+YFQV+L                                                        V+IGWK FVID A S EGCLDGWEGT DIGSPFGDGIY+KKSAVYGNGATGAADASVGLFVVSAF+ I+M+KTV+MSY GPGSIYSIGLHNIA+MC LLS+AS IS+AAFWGR+QGK+G++  SLAATLF ATLDVCEDDWDTVGFP GE   +E+FC+A PW+F+VPLYAGWTAIAHVAVMFLTS+W+L+KS  VEGILDGS+L  GK+V PRVVE+E AVGRALATTEDPDYDV DNKLYTGE  IMIRPYPLPG+ K V KAAEALVSPLRKM      G   HT    T    E AGV RP+ A    +   +  G   L SPGPV+ +P++T +P   AA XXXXXXXXXXXXXXX                   KPG    RS SA E E                             G+ H K RSEIDW  IM AG       Q+++G         SP LS+ MLG +DM+F GPSVKDGLTLGAITEDP EDMVSEFTM+P+ +GS THF+V
Sbjct:    2 APPKLAMRNQAVQAVGEKYFQVAL--------------------------------------------------------VDIGWKSFVIDKAYSTEGCLDGWEGTKDIGSPFGDGIYRKKSAVYGNGATGAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGEGESEEIFCQAKPWNFEVPLYAGWTAIAHVAVMFLTSVWILTKSGLVEGILDGSKLVGGKAVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKMQG----GSPKHTKDN-TLRTGERAGV-RPKIALGGDIEG-QATGGHNLSSPGPVQSIPRATGAPGSKAATXXXXXXXXXXXXXXXLPG----------------KPGGXXXRSASASEEEV--------------------SPAIRSSIGKGHGKTRSEIDWGRIMDAGDNDGTAKQYDDGDEDDD----SPHLSSVMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV 501          
BLAST of mRNA_C-linearis_contig7.14429.1 vs. uniprot
Match: A0A6H5L9G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G0_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.370e-60
Identity = 183/387 (47.29%), Postives = 214/387 (55.30%), Query Frame = 0
Query:  269 MFLTSIWLLSKSAFVEGILDGSRLSDGKSVAPRVVEFENAVGRALATTEDPDYDVPDNKLYTGEQKIMIRPYPLPGTAKAVMKAAEALVSPLRKMSRKRRLGCRTHTTTRPTPSRREPAGVLRPRAAFSSPLSAAEFDGSQGLPSPGPVRPLPKSTSSPSKAAAXXXXXXXXXXXXXXXXXXXX------------------SKGDSSPRDDDQGTD-------------KPG-----------------HKGSRSSAREGEFGFDDGDGLDGGDXXXXXXXXXXXXXXXDGRRHEKNRSEIDWTSIMGAGQHEEGGXXXXXXXG-----SPGLSAGMLGGVDMIFQGPSVKDGLTLGAITEDPHEDMVSEFTMSPRKKGSQTHFDV 602
            MFLTS+W+LSKS  VEGILDGS+L DGK+V         AVGRALATTEDPDYDV DNKLYTGE  IMIRPYPLPG+ K V KAAE LVSPLRKM      G   HT    T    E AGV RP  A  + +   +  G   L SPGPV  +P++  +P+  AA XXXXXXXXXXXXXXXXXXX                  S+ + SP     G+              KP                  ++   S+++    G  D D  D                   G+ HEK RSEIDW  IM AG ++  G       G     SP LS+GMLG +DM+F GPSVKDGLTLGAITEDP EDMVSEFTM+P+ +GS THF+V
Sbjct:    1 MFLTSVWILSKSGLVEGILDGSKLVDGKAVT--------AVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEVLVSPLRKMG-----GSPKHTKNN-TLRTGESAGV-RPNIALGADIEG-QAPGGHNLSSPGPVESIPRAAVAPASKAATXXXXXXXXXXXXXXXXXXXXXXXXXXPGGEGGRSASASEEEVSPAIRSSGSSGRTLNRRAHAMGIKPQSSMTSHHIIRRRQITMVNRDHVSTSKYHNKGPWDRDAGDVETDSSLGNVARSPASVVSGKGHEKTRSEIDWGRIMDAGHND--GTAKSYDDGDEDDDSPHLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKARGSATHFEV 369          
BLAST of mRNA_C-linearis_contig7.14429.1 vs. uniprot
Match: D8LHX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX3_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.890e-44
Identity = 123/374 (32.89%), Postives = 176/374 (47.06%), Query Frame = 0
Query:   19 NAAVQAVGERYFQVSLAGLVVAGVLAIVAVSIGSRRGLFEFRIDRCDCLLSSSAQEAVDE-----------------GRECVFGQNMLGVNIGWKRFVIDDANSLEGC-------------------LDGWEGTTDIGSPFG-DGIYKKKS----AVYGNGATGAADASVGLFVVSAFMCIVMYKTVQMSYVGPGSIYSIGLHNIAMMCFLLSIASAISVAAFWGRVQGKIGNLRDSLAATLFKATLDVC---EDDWDTVGFPTGEDEVFCEAAPWSFDVPLYAGWTAIAHVAVMFLTSIWLLSKSAFVEGILDGSRLSDGKSVAPRVVEFENAVGRALATTEDPDYDVPDNKLYTGEQKIMIRPYPLPGTAKA 348
            NAAV AVG  +F+V++ G  ++G+    +V +G  +G FE+ +DRC C++   A     +                    CVFGQ+   V+IGWK F  D      GC                   LD           +  DG ++K      A   NG + A    V + VV  F  I+ YK ++ SY+  GS  SIGL  +  +  L+ + +A ++ +FW  ++G+ G+ + +L   L     D C     D D  G  T     FC   PW+F  P       I  V +  L +++++ K+  VEG+LDGS    G  + PRVVE E  VG+ALAT  DPDYD  +N LY G    MIRPYPLP +AKA
Sbjct:    6 NAAVVAVGRTFFRVAIVGYTLSGLAMFPSVILGVSKGYFEWEMDRCTCVVEQEAAATTGQPIVSSSSLSGTGTTAGASSSCVFGQDFAKVSIGWKEFTYDKLVHTVGCPIATAFYEANPALDDDDLNLDNERSLYFFDEVYPLDGEFQKTDNPTQADESNGGSEAGGGVVAMQVVLTFFSILTYKMLKASYLSNGSHCSIGLALMTRLNLLVGVGTAAAIVSFWWLIEGRFGDEQKALTTALENILFDECWGETADDDAAGLQT-----FCPVRPWTFTGPGLPMMLGIFQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDS-ENPLYNGAA-TMIRPYPLPKSAKA 372          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14429.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1J1_ECTSI4.800e-19357.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L9G0_9PHAE1.370e-6047.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHX3_ECTSI2.890e-4432.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 203..255
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..138
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 256..277
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 181..202
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 139..161
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 162..180
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..50
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 278..602
NoneNo IPR availableTMHMMTMhelixcoord: 138..160
NoneNo IPR availableTMHMMTMhelixcoord: 180..202
NoneNo IPR availableTMHMMTMhelixcoord: 29..51
NoneNo IPR availableTMHMMTMhelixcoord: 256..278

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:1604142..1612876 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14429.1mRNA_C-linearis_contig7.14429.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 1604142..1612876 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14429.1 ID=prot_C-linearis_contig7.14429.1|Name=mRNA_C-linearis_contig7.14429.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=603bp
MVLGLKTPNKAPPKVVLRNAAVQAVGERYFQVSLAGLVVAGVLAIVAVSI
GSRRGLFEFRIDRCDCLLSSSAQEAVDEGRECVFGQNMLGVNIGWKRFVI
DDANSLEGCLDGWEGTTDIGSPFGDGIYKKKSAVYGNGATGAADASVGLF
VVSAFMCIVMYKTVQMSYVGPGSIYSIGLHNIAMMCFLLSIASAISVAAF
WGRVQGKIGNLRDSLAATLFKATLDVCEDDWDTVGFPTGEDEVFCEAAPW
SFDVPLYAGWTAIAHVAVMFLTSIWLLSKSAFVEGILDGSRLSDGKSVAP
RVVEFENAVGRALATTEDPDYDVPDNKLYTGEQKIMIRPYPLPGTAKAVM
KAAEALVSPLRKMSRKRRLGCRTHTTTRPTPSRREPAGVLRPRAAFSSPL
SAAEFDGSQGLPSPGPVRPLPKSTSSPSKAAAKAAKKAAKAAKKAAKSGI
KSSKGDSSPRDDDQGTDKPGHKGSRSSAREGEFGFDDGDGLDGGDDDLGG
SSSSVVIVAEDGRRHEKNRSEIDWTSIMGAGQHEEGGATDDDGGGSPGLS
AGMLGGVDMIFQGPSVKDGLTLGAITEDPHEDMVSEFTMSPRKKGSQTHF
DV*
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