mRNA_C-linearis_contig7.14429.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig7.14429.1 vs. uniprot
Match: D7G1J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J1_ECTSI) HSP 1 Score: 560 bits (1444), Expect = 4.800e-193 Identity = 345/603 (57.21%), Postives = 393/603 (65.17%), Query Frame = 1
Query: 31 APPKVVLRNAAVQAVGERYFQVSLAGLVVAGVLAIVAVSIGSRRGLFEFRIDRCDCLLSSSAQEAVDEGRECVFGQNMLGVNIGWKRFVIDDANSLEGCLDGWEGTTDIGSPFGDGIYKKKSAVYGNGATGAADASVGLFVVSAFMCIVMYKTVQMSYVGPGSIYSIGLHNIAMMCFLLSIASAISVAAFWGRVQGKIGNLRDSLAATLFKATLDVCEDDWDTVGFPTGE---DEVFCEAAPWSFDVPLYAGWTAIAHVAVMFLTSIWLLSKSAFVEGILDGSRLSDGKSVAPRVVEFENAVGRALATTEDPDYDVPDNKLYTGEQKIMIRPYPLPGTAKAVMKAAEALVSPLRKMSRKRRLGCRTHTTTRPTPSRREPAGVLRPRAAFSSPLSAAEFDGSQGLPSPGPVRPLPKSTSSPSKAAAXXXXXXXXXXXXXXXXXXXXSKGDSSPRDDDQGTDKPGHKGSRS-SAREGEFGFDDGDGLDGGDXXXXXXXXXXXXXXXDGRRHEKNRSEIDWTSIMGAG-------QHEEGGXXXXXXXGSPGLSAGMLGGVDMIFQGPSVKDGLTLGAITEDPHEDMVSEFTMSPRKKGSQTHFDV 1806
APPK+ +RN AVQAVGE+YFQV+L V+IGWK FVID A S EGCLDGWEGT DIGSPFGDGIY+KKSAVYGNGATGAADASVGLFVVSAF+ I+M+KTV+MSY GPGSIYSIGLHNIA+MC LLS+AS IS+AAFWGR+QGK+G++ SLAATLF ATLDVCEDDWDTVGFP GE +E+FC+A PW+F+VPLYAGWTAIAHVAVMFLTS+W+L+KS VEGILDGS+L GK+V PRVVE+E AVGRALATTEDPDYDV DNKLYTGE IMIRPYPLPG+ K V KAAEALVSPLRKM G HT T E AGV RP+ A + + G L SPGPV+ +P++T +P AA XXXXXXXXXXXXXXX KPG RS SA E E G+ H K RSEIDW IM AG Q+++G SP LS+ MLG +DM+F GPSVKDGLTLGAITEDP EDMVSEFTM+P+ +GS THF+V
Sbjct: 2 APPKLAMRNQAVQAVGEKYFQVAL--------------------------------------------------------VDIGWKSFVIDKAYSTEGCLDGWEGTKDIGSPFGDGIYRKKSAVYGNGATGAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGEGESEEIFCQAKPWNFEVPLYAGWTAIAHVAVMFLTSVWILTKSGLVEGILDGSKLVGGKAVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKMQG----GSPKHTKDN-TLRTGERAGV-RPKIALGGDIEG-QATGGHNLSSPGPVQSIPRATGAPGSKAATXXXXXXXXXXXXXXXLPG----------------KPGGXXXRSASASEEEV--------------------SPAIRSSIGKGHGKTRSEIDWGRIMDAGDNDGTAKQYDDGDEDDD----SPHLSSVMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV 501
BLAST of mRNA_C-linearis_contig7.14429.1 vs. uniprot
Match: A0A6H5L9G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G0_9PHAE) HSP 1 Score: 215 bits (547), Expect = 1.370e-60 Identity = 183/387 (47.29%), Postives = 214/387 (55.30%), Query Frame = 1
Query: 805 MFLTSIWLLSKSAFVEGILDGSRLSDGKSVAPRVVEFENAVGRALATTEDPDYDVPDNKLYTGEQKIMIRPYPLPGTAKAVMKAAEALVSPLRKMSRKRRLGCRTHTTTRPTPSRREPAGVLRPRAAFSSPLSAAEFDGSQGLPSPGPVRPLPKSTSSPSKAAAXXXXXXXXXXXXXXXXXXXX------------------SKGDSSPRDDDQGTD-------------KPG-----------------HKGSRSSAREGEFGFDDGDGLDGGDXXXXXXXXXXXXXXXDGRRHEKNRSEIDWTSIMGAGQHEEGGXXXXXXXG-----SPGLSAGMLGGVDMIFQGPSVKDGLTLGAITEDPHEDMVSEFTMSPRKKGSQTHFDV 1806
MFLTS+W+LSKS VEGILDGS+L DGK+V AVGRALATTEDPDYDV DNKLYTGE IMIRPYPLPG+ K V KAAE LVSPLRKM G HT T E AGV RP A + + + G L SPGPV +P++ +P+ AA XXXXXXXXXXXXXXXXXXX S+ + SP G+ KP ++ S+++ G D D D G+ HEK RSEIDW IM AG ++ G G SP LS+GMLG +DM+F GPSVKDGLTLGAITEDP EDMVSEFTM+P+ +GS THF+V
Sbjct: 1 MFLTSVWILSKSGLVEGILDGSKLVDGKAVT--------AVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEVLVSPLRKMG-----GSPKHTKNN-TLRTGESAGV-RPNIALGADIEG-QAPGGHNLSSPGPVESIPRAAVAPASKAATXXXXXXXXXXXXXXXXXXXXXXXXXXPGGEGGRSASASEEEVSPAIRSSGSSGRTLNRRAHAMGIKPQSSMTSHHIIRRRQITMVNRDHVSTSKYHNKGPWDRDAGDVETDSSLGNVARSPASVVSGKGHEKTRSEIDWGRIMDAGHND--GTAKSYDDGDEDDDSPHLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKARGSATHFEV 369
BLAST of mRNA_C-linearis_contig7.14429.1 vs. uniprot
Match: D8LHX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX3_ECTSI) HSP 1 Score: 174 bits (441), Expect = 2.890e-44 Identity = 123/374 (32.89%), Postives = 176/374 (47.06%), Query Frame = 1
Query: 55 NAAVQAVGERYFQVSLAGLVVAGVLAIVAVSIGSRRGLFEFRIDRCDCLLSSSAQEAVDE-----------------GRECVFGQNMLGVNIGWKRFVIDDANSLEGC-------------------LDGWEGTTDIGSPFG-DGIYKKKS----AVYGNGATGAADASVGLFVVSAFMCIVMYKTVQMSYVGPGSIYSIGLHNIAMMCFLLSIASAISVAAFWGRVQGKIGNLRDSLAATLFKATLDVC---EDDWDTVGFPTGEDEVFCEAAPWSFDVPLYAGWTAIAHVAVMFLTSIWLLSKSAFVEGILDGSRLSDGKSVAPRVVEFENAVGRALATTEDPDYDVPDNKLYTGEQKIMIRPYPLPGTAKA 1044
NAAV AVG +F+V++ G ++G+ +V +G +G FE+ +DRC C++ A + CVFGQ+ V+IGWK F D GC LD + DG ++K A NG + A V + VV F I+ YK ++ SY+ GS SIGL + + L+ + +A ++ +FW ++G+ G+ + +L L D C D D G T FC PW+F P I V + L +++++ K+ VEG+LDGS G + PRVVE E VG+ALAT DPDYD +N LY G MIRPYPLP +AKA
Sbjct: 6 NAAVVAVGRTFFRVAIVGYTLSGLAMFPSVILGVSKGYFEWEMDRCTCVVEQEAAATTGQPIVSSSSLSGTGTTAGASSSCVFGQDFAKVSIGWKEFTYDKLVHTVGCPIATAFYEANPALDDDDLNLDNERSLYFFDEVYPLDGEFQKTDNPTQADESNGGSEAGGGVVAMQVVLTFFSILTYKMLKASYLSNGSHCSIGLALMTRLNLLVGVGTAAAIVSFWWLIEGRFGDEQKALTTALENILFDECWGETADDDAAGLQT-----FCPVRPWTFTGPGLPMMLGIFQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDS-ENPLYNGAA-TMIRPYPLPKSAKA 372 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14429.1 >prot_C-linearis_contig7.14429.1 ID=prot_C-linearis_contig7.14429.1|Name=mRNA_C-linearis_contig7.14429.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=603bp MVLGLKTPNKAPPKVVLRNAAVQAVGERYFQVSLAGLVVAGVLAIVAVSIback to top mRNA from alignment at C-linearis_contig7:1604142..1612876- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14429.1 ID=mRNA_C-linearis_contig7.14429.1|Name=mRNA_C-linearis_contig7.14429.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8735bp|location=Sequence derived from alignment at C-linearis_contig7:1604142..1612876- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:1604142..1612876- >mRNA_C-linearis_contig7.14429.1 ID=mRNA_C-linearis_contig7.14429.1|Name=mRNA_C-linearis_contig7.14429.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3618bp|location=Sequence derived from alignment at C-linearis_contig7:1604142..1612876- (Chordaria linearis ClinC8C monoicous)back to top |