prot_C-linearis_contig110.1430.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig110.1430.1
Unique Nameprot_C-linearis_contig110.1430.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length56
Homology
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BLAST of mRNA_C-linearis_contig110.1430.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.620e-24
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 0 
Query:    2 VHSNTAGLPVFNIPLVVFTNAFNFFQRGGSPYSINSTHFTIGSTTRAFRRRLSSW 56
            V+ N AGLPVF+IPLV+FT+AFNFFQRGGSPYSIN+THFTIGSTTRAFRRRL SW
Sbjct:  323 VYFNKAGLPVFSIPLVIFTDAFNFFQRGGSPYSINATHFTIGSTTRAFRRRLESW 377
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BLAST of mRNA_C-linearis_contig110.1430.1 vs. uniprot
Match: A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.940e-19
Identity = 39/56 (69.64%), Postives = 51/56 (91.07%), Query Frame = 0 
Query:    1 GVHSNTAGLPVFNIPLVVFTNAFNFFQRGGSPYSINSTHFTIGSTTRAFRRRLSSW 56
            GV +NT+ LPVF++PLV+FT+AFNFFQR G+ +S+N+THF+IGSTTR+ RRRLSSW
Sbjct:  355 GVFANTSQLPVFSVPLVIFTDAFNFFQRIGNAFSVNATHFSIGSTTRSHRRRLSSW 410
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1430.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYQ6_9PHAE2.620e-2485.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF97_9PHAE1.940e-1969.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:16729..16896 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1430.1mRNA_C-linearis_contig110.1430.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig110 16729..16897 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig110.1430.1 ID=prot_C-linearis_contig110.1430.1|Name=mRNA_C-linearis_contig110.1430.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=56bp
GVHSNTAGLPVFNIPLVVFTNAFNFFQRGGSPYSINSTHFTIGSTTRAFR
RRLSSW
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