mRNA_C-linearis_contig7.14648.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14648.1
Unique NamemRNA_C-linearis_contig7.14648.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:4015252..4020077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size658
Cds size654
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14648.1prot_C-linearis_contig7.14648.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 4015254..4020077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930277.1056418-CDS-C-linearis_contig7:4015253..40156801622930277.1056418-CDS-C-linearis_contig7:4015253..4015680Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 4015254..4015680 -
1690880988.9115329-CDS-C-linearis_contig7:4015253..40156801690880988.9115329-CDS-C-linearis_contig7:4015253..4015680Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 4015254..4015680 -
1622930277.117883-CDS-C-linearis_contig7:4016397..40165401622930277.117883-CDS-C-linearis_contig7:4016397..4016540Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 4016398..4016540 -
1690880988.9235587-CDS-C-linearis_contig7:4016397..40165401690880988.9235587-CDS-C-linearis_contig7:4016397..4016540Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 4016398..4016540 -
1622930277.1321316-CDS-C-linearis_contig7:4019993..40200771622930277.1321316-CDS-C-linearis_contig7:4019993..4020077Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 4019994..4020077 -
1690880988.9331222-CDS-C-linearis_contig7:4019993..40200771690880988.9331222-CDS-C-linearis_contig7:4019993..4020077Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 4019994..4020077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14648.1

>prot_C-linearis_contig7.14648.1 ID=prot_C-linearis_contig7.14648.1|Name=mRNA_C-linearis_contig7.14648.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=218bp
KLSFLSVRWIDEGESGSKLMRGGNGHEDPRTLWRYPSPAADDCPRRKHGR
PLARTSGLFPPRTGKDRSGYPAPRRRRPTKEKTHTPEYQPSDTDAASDSD
GTCSAASEPSPDLLAKQGQARRQKVGRAIRLPARLADADVQLTGSGGPSG
AGIGRPSVFGGAARTSRRDDEGAAPSQPRRPPVRAAQAAVAAAPAARARP
RLPTPRRGGAPVPSPATT
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mRNA from alignment at C-linearis_contig7:4015252..4020077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14648.1 ID=mRNA_C-linearis_contig7.14648.1|Name=mRNA_C-linearis_contig7.14648.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4826bp|location=Sequence derived from alignment at C-linearis_contig7:4015252..4020077- (Chordaria linearis ClinC8C monoicous)
AAACTCTCATTCCTATCCGTTCGCTGGATTGATGAGGGAGAGAGTGGGAG
CAAGCTCATGCGCGGCGGCAACGGACACGAAGATGTGAGACGACCCAACT
GTTTGTGTTCTTATTCCAACTTTTTTGCTCTGATTCTACGTACGCCTTGC
GCCTTTTCATCCTTTCTGTTTTGTCGAACAGAAACGCGGCCCTATTTTCC
TCCCCCCGCCCTCTCTGCTCATACAAGCTGGGCTCGCCATAAAGCTAACT
TTAACTTTTGTTCGTCACGCCATAACTTTTCAAGGAGAACGAATTAACCC
GCGCTCGGCACATCCTCTGAATCAGCCAATCACAGCGGTTTTGCAGGTGT
TGGCTGTCGGGTGATTAGCTGAGTTTCCGCAAAATGAACCTTTCCCTCCG
CAGTTTGTATAGGTTTTAGAGACATGGTAAAAAAAAAACGAAACCGATTT
TTTTGCGGCGGAACGAAAAAAAAAAATCAGCAGCAGAACACACCAACACG
TTCCCACACGAAAGCAAGCATGGGCTCCCGGCGTACGCCCAAAGCCACAG
ACAAGTGGCAGAGGACGTCTGTCCCTGTATTGTATGAAGAGAGGGCCAGC
GGCAGGTGGCGGGGGTATCTCAACTTCTGCCAACGCCCGAAAGCAAAGAC
GCTGAGAAAAACAAGTCCGTGGTTTGCCTCTCGAGAGGATGCGGATGCGG
GTTTGCTGGACTTCAGGATGGGCTGGGAGTACAGCCACCGCGGACACCTG
TACAAGCGGAAGGAGACAGACGAAGTCCCTTCCTCAGCAGTGGCGGCGGC
GGAGAAGATTCCAGCAGGCAAGTGTGTTTACATGCAACGCGCAGGACCAA
GATGTTTTTTTTTTCAAATCTTGCTCATGTGGCAGCAGGGGATCGCTGCT
GTGTGCACCGCACACTGTTGCTTCGGACATTGCACGCCACTGTAAATCAA
ACTAGCTGCGCGCCTGGCTCTCTGCTGTCTGATTCTTGTCAGGCTAGCGT
ACTTTGGCCTGTGGGATCGTTGAATTCAAGCTAGGTTCAGCTCCTGCAAG
AGTGCTGCACTGCTGTTGTGTGTGTGTGTTTTTTCAATTTTTGCAACGTC
AATTTATTTGAATTTTGAACACACCGCACTCGGCGCGCCGGGTGCTGCTG
CTGCTTCTTGACGGGACGCTTCTCCGCCCGTATTGCTGTTGTACTCACCG
GTACTTCTGAGGGTTAGTTCAAAGGCACCACACTGTCCTGCCAAGCCTTG
GAATGTTGTTTGTGTGCATGCGTGGCAGTTGCTGCTGTATCTTGCATCAT
GCGGCTGCGTGCGGCCACCTCGGACTTTTGGATACCGTCAAAAGTGTAAG
AATACGACAACATATCCGCGTGTGCAGGCGCCCCCAACACCGCACATCGA
CAGTATTGACCACTGGCAACACACACAGCAGTGATCGTCACCATTAAACG
TAGAAAACCGCCTCTACGCGCTGTACTAAGTGCTGCACAGATATGCTGCT
TCGGCCCGAAAAAACCGCTGTACAGCGGCGGTGCAAAAAAAAACGCGTGC
ACACATGTAGGGTCATCTCATGCGTCTCAACGAACCTGTTTTTTCATCAT
TCTCACACGCGCACCAACTCTGCTTCCACCCTCCGCCCACACAGGAAAAT
CGAAGAACATCTCGGCAACCTGAACTGTGAGCAGGAGAGCCGTTTCAAGC
GACAGCGGCGGTCCGGCTCCGTCATGACCCGTTGAAATCGACCACTCGTC
GGGGCACACGAAGCATCGCGAGGATGGATTGCACGTGTCGAACATGAACG
TCAAGTACGGGGGGCAGCAAAAGGTTTTGCGAGATACGGTCGTGACGGAC
GAGTGCTTGGGACCCGGAGAGGCGAAGATGTACTTGGCGAACGGCAAGTG
GAGCACGAAGTTCAGCGAGGGAGCGGCGGTCGTGGACTTGAAGCTCAAGG
CGGGCGACACGCACACCAGCACGTTTGCGGCAGGTGCACCCCCGCCGTTT
TACGAGTGGGATGCCCCGCGCAAAGATCAGAAGGTCGCACGAAAGACAAA
GTCCCGAAAGAGCGCGGGTGGTGCGGGTAGTGCGGGTGGCGTGGGTGTGC
AGCAGCATGTAGATAGCGGGGGGGCTTCGGCAGAACCGAAGGAAAGGGTG
AAGGGGGGGTTCGAAGGAATGGCAAAAGGAGAGAAGCAGTACCTGTGGGA
GCGTGGGTTGTGGAAGGAGGGGATGTCTGCGTCGAAGGGGATCGCTGATG
ACATGAACATAGAGAAAGTCTTGCAGTCATTGCCGGATTTCGAGAATGAG
AAGACTGCCGTGCAGGAAGTGATGGAGAGTCGAGGGCACATTCTGCTGTT
ATCTCCGAAATGCCACCCAGAGATTGCGGGGGTAGGGATCGAGTACTCGT
GGGGGTTTTCCAAGAAGAACTTCAGGCGGAAGTTCAACGACGAGGTCCCG
AAACACTTGCACGACAACATCATGAAGTCGTTGTGTCCGGAGAAGGAGTT
AACGGTCGGGCGGGTGCGGCGTTTTTCCCGGCGTACACGAGACTACTGCC
GGGCTTACCGCGATATTAGGCTAAGCGGGGTAGCGATTGAGAGCAAGGAG
ATGATCGAAAAGATGCGCGCAAAGCAGAAGGCTCACCGCAACATCCTTGA
CATGGAGATTGGGTTCCTTGACAAGCAGTAAGCTCAATAACCGGCCGGCC
GGAGGAGGGAAACGGGGGTGCCAGGTTGGCGGGGGGGGTGCGATACCGAT
CGTCGTGTATAAAATGCAATTTGTGTCTCTTGCCGTATTGATTAATTTAA
TATGTATTGGTTTGCAACGAGGGCCGTGCAAGGAATTGAAGTTACGACCG
GTCCTGCTGCTGCTGCTGTGTGTGTGTGTGTGTTTTTTTTTAAGTTGTGC
TTGCTGGTACAATTATTGTACAACTTGTTCAAACAATACGAGTTTGCCAG
CCGTCGTGAGCATTGGATACACCTCTTCTTCGTTGTACCACCGCTACATA
ACGAACAGCAGGGGCAGGGATACATGTATATGCGGCCGCTTCATCACACA
CTCTTTCCTGGGGGCTGTGGCCAACTCTATTTCCTATATACTCCAACCCT
GGCCCTGCACCCACACCGGTCGGCCACTCAAATTCCCGGTTTCCCGCGCG
GTTTTTTCGAGTTGGAACCTGAAATCTTGACACGCGTTTTTGATACGCAA
AACAAACCCATTGCCTACTGCTCCTTCTATTTTTTTTTTGTTTCGATCAC
TTTGTCACGATAATAAACATTCTTGAAAACACTAATGTGAGTCTAGCTCA
CTGAAAAAAAAAAAAAATGTGCAGTGGGGAATGGGTTTGTTTGACGCATA
AAAAACGCGTGTCAAAATTTCAAGTTCCAACTCGAAAAAACCGCGCGGGA
AATCCGTTCCAGCCATTTTGTTAGCTTTATGGCGAGCCCAGCTTGTAACG
TTTTTACACCACCAAAACTCATCTCCTCTTCGCTCTCCACCTCGTGTACT
TTCTTTCCACGTTCACGATGCCTCCTGCTCACCGAAGCCAAGGACGCTCT
GGCGCTACCCCTCGCCAGCCGCTGACGACTGTCCGCGACGAAAACACGGC
CGGCCGCTGGCGCGAACAAGCGGGCTTTTTCCACCACGAACGGGAAAGGA
CCGAAGCGGATATCCCGCGCCGCGTCGGAGGTGATTTATTTGCACCCTTT
CCATGGCAGGGTTTTCAGGCTGCGTGTGCTTCCACCCTCGGCGTCGTGTC
CCTCTCGCTATTGCGGAGAGTGCTCTCGAAACACCCAACATGTTTTGGGC
GGAACCAAAATTGCCGTTAGCTTTTCCTCGCCTCTTTTCCCTTCTCCTCG
GCCTCTCATTTCAAATTTTGGAACGTTACGGCTTGACAGCGTAGTTTTGT
TCCACTCTCGGCAACGATGCAGAGCTGATGGTGTGTTTGGCAGAGATCCA
GCTTCGCATATTCCTCTGCCCTAGAACCTGCACGCGACCGCGAAGTTAGA
GGTGTTACAAGCAAGCTCGCTGCATGCATGTACTTAGTGCGCGCAGGAGC
TGATTGCATGCTTCGAGCCCTGGCCCTCGCCTCAGTGCGCAGAGGTCACA
AAGTGTTGGGTCATCGCGTGGCGACCATACTCTTTTTCGTAGCTTTTGTC
CTTGGTAGCTGTTTGTTTCATGGATGAGTACGGCGTTCTCTCGTCCGATG
GGACAAAGAAACATTCGAAGCCGGTCTGCTTCGGCTAGATCAGGGCGATG
ACTTGCTTACGCCCGATGCGAGAGTGGAAGTCTACGTATGTATTGTCACT
AAAACAATTGGAGTAATAAATTGGGTCCGTTTCTGTTTTGAGAATGCTAA
TTTTTAGCAACGATGCTGCTTCTGCCCCCGCCTGCGTTCTGTTCCAGGAG
ACCGACAAAGGAGAAGACTCACACTCCCGAGTACCAGCCCTCAGACACGG
ATGCAGCGAGCGACAGCGACGGTACCTGCTCCGCCGCCTCCGAGCCGAGC
CCCGACCTGCTCGCGAAGCAAGGCCAGGCGAGGAGACAGAAGGTTGGGCG
CGCGATTCGCCTACCCGCGCGCCTGGCTGACGCCGACGTCCAGCTCACCG
GCAGCGGTGGTCCTTCCGGAGCCGGCATAGGCCGCCCTTCCGTCTTCGGC
GGCGCTGCAAGGACCTCTAGGCGCGATGACGAAGGGGCAGCGCCATCCCA
GCCCCGCCGCCCTCCTGTACGTGCTGCGCAAGCCGCCGTCGCTGCTGCTC
CTGCGGCCCGGGCACGTCCTCGACTCCCCACCCCTCGGCGTGGAGGAGCG
CCCGTCCCCTCCCCAGCGACAACGAC
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Coding sequence (CDS) from alignment at C-linearis_contig7:4015252..4020077-

>mRNA_C-linearis_contig7.14648.1 ID=mRNA_C-linearis_contig7.14648.1|Name=mRNA_C-linearis_contig7.14648.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at C-linearis_contig7:4015252..4020077- (Chordaria linearis ClinC8C monoicous)
AAACTCTCATTCCTATCCGTTCGCTGGATTGATGAGGGAGAGAGTGGGAG
CAAGCTCATGCGCGGCGGCAACGGACACGAAGATAAACTCTCATTCCTAT
CCGTTCGCTGGATTGATGAGGGAGAGAGTGGGAGCAAGCTCATGCGCGGC
GGCAACGGACACGAAGATCCAAGGACGCTCTGGCGCTACCCCTCGCCAGC
CGCTGACGACTGTCCGCGACGAAAACACGGCCGGCCGCTGGCGCGAACAA
GCGGGCTTTTTCCACCACGAACGGGAAAGGACCGAAGCGGATATCCCGCG
CCGCGTCGGAGCCAAGGACGCTCTGGCGCTACCCCTCGCCAGCCGCTGAC
GACTGTCCGCGACGAAAACACGGCCGGCCGCTGGCGCGAACAAGCGGGCT
TTTTCCACCACGAACGGGAAAGGACCGAAGCGGATATCCCGCGCCGCGTC
GGAGGAGACCGACAAAGGAGAAGACTCACACTCCCGAGTACCAGCCCTCA
GACACGGATGCAGCGAGCGACAGCGACGGTACCTGCTCCGCCGCCTCCGA
GCCGAGCCCCGACCTGCTCGCGAAGCAAGGCCAGGCGAGGAGACAGAAGG
TTGGGCGCGCGATTCGCCTACCCGCGCGCCTGGCTGACGCCGACGTCCAG
CTCACCGGCAGCGGTGGTCCTTCCGGAGCCGGCATAGGCCGCCCTTCCGT
CTTCGGCGGCGCTGCAAGGACCTCTAGGCGCGATGACGAAGGGGCAGCGC
CATCCCAGCCCCGCCGCCCTCCTGTACGTGCTGCGCAAGCCGCCGTCGCT
GCTGCTCCTGCGGCCCGGGCACGTCCTCGACTCCCCACCCCTCGGCGTGG
AGGAGCGCCCGTCCCCTCCCCAGCGACAACGGAGACCGACAAAGGAGAAG
ACTCACACTCCCGAGTACCAGCCCTCAGACACGGATGCAGCGAGCGACAG
CGACGGTACCTGCTCCGCCGCCTCCGAGCCGAGCCCCGACCTGCTCGCGA
AGCAAGGCCAGGCGAGGAGACAGAAGGTTGGGCGCGCGATTCGCCTACCC
GCGCGCCTGGCTGACGCCGACGTCCAGCTCACCGGCAGCGGTGGTCCTTC
CGGAGCCGGCATAGGCCGCCCTTCCGTCTTCGGCGGCGCTGCAAGGACCT
CTAGGCGCGATGACGAAGGGGCAGCGCCATCCCAGCCCCGCCGCCCTCCT
GTACGTGCTGCGCAAGCCGCCGTCGCTGCTGCTCCTGCGGCCCGGGCACG
TCCTCGACTCCCCACCCCTCGGCGTGGAGGAGCGCCCGTCCCCTCCCCAG
CGACAACG
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