prot_C-linearis_contig7.14460.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig7.14460.1
Unique Nameprot_C-linearis_contig7.14460.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length861
Homology
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BLAST of mRNA_C-linearis_contig7.14460.1 vs. uniprot
Match: D7G0M4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M4_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.340e-37
Identity = 380/534 (71.16%), Postives = 406/534 (76.03%), Query Frame = 0 
Query:   58 GGGAQAQKWKHPRGTDNPHSRLFVKEVKAMGSNGDWRGALRELGAAEGRAASTLAATVAAASTAEIAPRPEPMTVYMYTACITAMSKCRRWREALAVLDRMLAAAAVAAGGGAGLAPNVNTMSXXXXXXXXXXXXXXXXXXXXXXKTIGDEVGGLKXXXXXXXXXXXXXXGVGDWVSAVRLLNDMRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMHNDPDGTVDASSFNXXXXXXXXXXXXXXXXXXXXXXIRGPTPPDIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLLRLGFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPEKRVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASSTSPSLSSXXXXXXXXXXA------------------TAPGSAAKQKRGRSSSAVGTRGXXXXXXXXXXXXXXXXXXXXXXXXXGAPAADEAVRFFCRPNVVTYNAAMQACGSAGQWREALRLLRAMLAEGIA 573
            GGGAQ ++    RGTDNPHSRLFVK+VKAM S+GDW+  LREL AAEGRAA+T  A       A +APR EPMTVYMYTACIT MSKC+RWREAL VLDRM+AAA    GGG  L PNVNTMS XXXXXXXXXXXXXXXXXXXXXKTIGDE GGLK  XXXXXXXXXXXX            +D+RAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    DPD  VD +SFNXXXXXXXXXXXXXXXXXXXX        P +V XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIS+LR+G  XXXXXXXXXXXXXXXXXXXXXXX     MP+  V XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +++SP+ S  XXXXXXXXX                      G A   + GR  +A         XXXXXXXXXXXXXXXXXXXXX    A+    F+CRPNV T+NAAMQA GSAG+WREAL LLR MLAE IA
Sbjct:   30 GGGAQVRR---RRGTDNPHSRLFVKKVKAMESSGDWKAVLRELDAAEGRAAAT--AXXXXXXXAAVAPRAEPMTVYMYTACITTMSKCKRWREALEVLDRMMAAAQEEGGGGE-LTPNVNTMSAXXXXXXXXXXXXXXXXXXXXXKTIGDEAGGLKPDXXXXXXXXXXXXXXXXXXXXXXXXDDLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDPDVPVDVASFNXXXXXXXXXXXXXXXXXXXXEITTEGLAPGLVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISMLRVGXXXXXXXXXXXXXXXXXXXXXXXXXRFLREMPQAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSSPTSSPWXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVEGPAISARSGRVPAAAAP-----VXXXXXXXXXXXXXXXXXXXXXXXREAETGRFFYCRPNVATFNAAMQAAGSAGEWREALTLLRGMLAEKIA 552
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14460.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0M4_ECTSI5.340e-3771.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 646..807
e-value: 5.7E-32
score: 113.3
coord: 284..385
e-value: 1.6E-26
score: 95.4
coord: 519..645
e-value: 2.4E-28
score: 101.4
coord: 81..283
e-value: 4.2E-35
score: 123.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 386..472
e-value: 4.4E-24
score: 86.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 86..215
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 392..441
e-value: 7.9E-9
score: 35.6
coord: 685..732
e-value: 4.0E-10
score: 39.7
coord: 539..586
e-value: 3.6E-10
score: 39.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 237..280
e-value: 8.8E-5
score: 22.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 395..429
e-value: 8.5E-7
score: 26.8
coord: 542..576
e-value: 4.4E-8
score: 30.8
coord: 218..250
e-value: 2.8E-4
score: 18.9
coord: 430..463
e-value: 9.4E-6
score: 23.5
coord: 178..203
e-value: 0.0028
score: 15.7
coord: 688..722
e-value: 7.2E-9
score: 33.3
coord: 616..642
e-value: 3.7E-6
score: 24.7
coord: 133..160
e-value: 0.0011
score: 17.0
coord: 723..752
e-value: 2.1E-5
score: 22.4
coord: 289..316
e-value: 2.5E-4
score: 19.0
coord: 359..393
e-value: 1.3E-4
score: 19.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 133..159
e-value: 0.0026
score: 17.9
coord: 289..315
e-value: 5.6E-4
score: 20.0
coord: 616..641
e-value: 1.9E-5
score: 24.6
coord: 359..383
e-value: 1.7E-4
score: 21.6
coord: 178..206
e-value: 6.9E-5
score: 22.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 321..355
score: 9.065
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 650..685
score: 5.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 540..574
score: 12.792
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 175..209
score: 9.854
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 613..643
score: 10.063
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 131..165
score: 8.418
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 393..427
score: 12.244
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 575..609
score: 8.166
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 286..320
score: 10.391
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 428..462
score: 11.531
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 215..249
score: 9.438
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 763..797
score: 5.042
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 721..755
score: 9.525
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 356..392
score: 10.019
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 686..720
score: 12.255
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 250..280
score: 8.089
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 321..464
coord: 131..315
coord: 535..664
coord: 652..792
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 14..860
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2229664..2235108 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14460.1mRNA_C-linearis_contig7.14460.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig7 2228618..2235144 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig7.14460.1 ID=prot_C-linearis_contig7.14460.1|Name=mRNA_C-linearis_contig7.14460.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=861bp
MAFISLLTVQAFRDAPRLPWKNNDQQQSISGRASFHSAAVQAKHVWRHRA
CCSISMSGGGAQAQKWKHPRGTDNPHSRLFVKEVKAMGSNGDWRGALREL
GAAEGRAASTLAATVAAASTAEIAPRPEPMTVYMYTACITAMSKCRRWRE
ALAVLDRMLAAAAVAAGGGAGLAPNVNTMSAVITACGRCGRGKEALEVLE
RMKTIGDEVGGLKPDLHCFSAAINAAGGVGDWVSAVRLLNDMRAAGIKPD
GFVYRASITACGNGGNLDMALKLLREMHNDPDGTVDASSFNAAITACGRC
KQWETAISLLREMIRGPTPPDIVSYGAAITACAACNQGDAAVRLLREIPV
VGITPDSQSYTSAISACGRSGDWERAVGLFREISLLRLGFRPDAVSYSAA
ITACGNGGQWEEALRLLREMPEKRVDPDVVCFNSAVTACAKSGRWEEGVS
LLEEMVASSTSPSLSSSSSSSSIPPPATAPGSAAKQKRGRSSSAVGTRGP
GTSPSPMRREKRSRGGRGAAVRGEGAPAADEAVRFFCRPNVVTYNAAMQA
CGSAGQWREALRLLRAMLAEGIAPNATSFTSAIAACGAAGEWEQARRLLD
AVKERAHGTALLSVGSYNAAIKACGDAGRFEEAVEVLREMEADARPGGAP
PPDATTYTAAIKASGAGSKHAIRLLREMPRKGVTPSRISYNAAINSCGRG
GEWELAESLFREMARLGLSPDVISYNSLISALGGAGQWERAVGYLREMSV
AGGGGGGGGVAPDGASFVAASLACERAGRYGEAAGLRAEAAGLGLLKSRE
VEGAGLLVDADAQAPTLPMTPAELASGLDANPNPSLGRRPSRARLTSAAA
AAAGSGTATV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat