mRNA_C-linearis_contig11.1272.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1272.1 vs. uniprot
Match: A0A6H5JU62_9PHAE (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU62_9PHAE) HSP 1 Score: 1051 bits (2718), Expect = 0.000e+0 Identity = 965/1909 (50.55%), Postives = 1131/1909 (59.25%), Query Frame = 3
Query: 9 SQNERAEPDDDRASGSIPRPPRPKHAARGTDPRASGSSRSTEGRPLARAVADPVTQTGDAKGASGRARGASHSGTGEIIEPSRE------GECA------LPPSNLEEG---DNGEAFPALPPASG-----GHMPAPM---PAVTRPG---SLDYSALAERLAIEMAAAXXXXXXXXXXXXXXXXXTAGGTISRLSVLPSFGDARRGDAKPRGVDSDDPPEPSESQACDDSSPRLVGAENDTDG-----RPLAPTLPLPLQ----PSNETKRLRVGEETVALRARLRERWFRLEAARKAQRQRESAERELMAAEDGSSARSTREQDGEAGSSGARTQGRSCIAEPAGVADDGGSSDGDRESGKGNASSXXXXXXXXXXXXXXXXSSRVTTTSRVPSTAETSCISNELDSTXXXXXXXXXXXXXXXXAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXMASTGPGLASSARQDLSKQDASGRTDVSDEAAD-SGDAAGASLGHVEKKEIDAAPCEGDGDSGRVPALHGECVHAACEAGMAGLLNDFLVRSGGRVADGKDKSRRTPLHLAAEAGSLECVSLLLKQGTRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMANSNQAWKSS---NREGAAPQTMVAMADPASKARGNATGNRRALPSSLYQGPANRGXXXXXXXS-VSVPALSPVHEAAAAGQTETLSLLLQLGVSLEERHSAAGGVGDTPLGRAVRAGQLDCAKLLLQAGAMIGRENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLEGGRSNGKLTAADGRAPVGAREKMMARRRVEPLELALREGQFACAAVLIEGGACITEGALRSVKLE-SAALASREKSTSQGPRVRYAGTSANDSYHGNAWSGKNAKRGAASASASLLPLQTDICQLVSPEISELADSSPPDGGGLEEDPN------DSVE-----------------------------------GSQTQYVGGLLPGLGECDVVLVLDDGSRLPVHSCLLAAFSGTFRDLLLRRNGLNCRGLCCASCDDGTRCSSGKSVGSLAGSSDASSAVADDGVDDRRNRSRDVQPLLAGGRLPSE--EAGGKRTRQASVATSEAAVAXXXXXXTSIAENTVWESPAVVEWKPARGDVLVRFLGAGTMATVVRHMYTGQSPADVHMDGLGRLLVASVALRMPRLMRQVEHLLSVSLSSQKGGDRSAQLKEVARLLRAXXXXXXAHLEHRCTLYLQANGGFPAVMKLRRELRVPALNASDVARGLARLTGSGYLGSGPAHAWSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDQLVPILLDPPR----CASTLSVGYPERTVLLKAAMAAACPGR--REIPPVPNKMPSQERQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAANPLASNFSAFSHGVGWLLSTGTVADVVLVLPGGP--------CTMVEPGATCSDEVEEEHDAEKESDTKGLGIGDGPHHQGLGAQAAASVVDT-SHGGTAGNDRDTGGTRQTTAASLAKERAAKATVDKTRFLAHSMVLAARSEKFAAMLRFVRRQDDDGLKCADGDAADSADDGTANGCEECRRVMSCGFKRGGVGSPEEATCGGLKNGASYGVDPQLSASNCGK----------------PLHCRRGRPRRRPRRDPMPRELELHSPLLSPRSLGLFLEFLYTGVLDPSLSTGELSELALIADEYLVPDLTRQVEALLMESL-------------AIRNAGEYSCQ-TTCRSNTSSHSRREEDTASVPLDVLQLGVSLGLPDLSAAAARAVLLQLDSVSRSEAFEASGMSKRGLVVAALEAVRS 5348
++++R +P + P PP PK AAR + AS ST RP ARA A + GA GR G S + + I P R GE LP + E+G ++ EAFPALPPASG G + AP+ P VT +LDYS+L +RLAIE AAA G SRLSVLPS G R G+AKP S P S+ + + SP +G + D + +P LP P +N R ET ALRARLR+RWFRLEAARKAQRQRE+AER LM AED ++ S G G G + + +G D G + G R S SS TS XXXXXXXXXXXXXXXX XXXXXXXX +++ A+ A + + AS R + + A+ SG+ G A C G G +PA+ GE V+AAC+AGMAGLLND LVRSGGR ADGKDK RRTPLHLAAEAGSLECVSLLLKQGTRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MANSNQAWKSS +R+ +AP +MV M+ AS+ARGNATG RRAL S + G +N + V VPALSP+HEAAA+GQ ETLSLLLQLGVSLEER +AAG GDTPLGRAVRAGQ+DCA++LL AGAM+GREN XXXXXXXXXXXXXXXXXXXXXXXX PL+GG+SNG+LT ADGRAP G REKMMARRRVEPLELALREGQ ACAA LIEGGA I E LR+VKL+ S + +KS +QG +V YAGTS +S G WSG N G+A A+ LPLQ DI Q +SPE+ E++DS+PPDGGGLE DP D V G +YVGGL P LGECD+ LVL+DGSRLP HSCLLAAFSGTF DL LRR+G R C A+ G S + V G+S+ ++A AD D+R RSRDV LLAG P + A + RQ S + SEAAVA T+ ENT W +P V++W P RG+V VRF GAGTM+ VV+H+YTGQ P+++H DGLGRLLVASV+LRM RL+RQVEHLLS L+ QKG RS Q E ARLLRA LE RCTLY+QANG FPAVMKLRREL VP+LN DV RGLARL+ SGYLGSGPA+AWSSS FDQLVP+LLD R C STLS+G ER VLL AA+A ACP R P+ + + +R+ + A PL SN SAFSHG+GWLL TGTVADVVLVLP P T++E G +E E+ + +E+ + G +G + GA +A S VD+ + G +D G R T S E K + +RFLAHSMVLA+RSEKF+AMLRFV+ QD + AD S DD + R + EE G ++ G + G + + N GK P RR RRRPRR+ PRE+ELHSP+L+P+SLGLFLEFLYTGVLD SLST ELSELALIADEYLVPDL RQ EALL+E L A RNAG+YS TT T+ S+REEDT S PL++LQLGVSL LPDLSAAAARAVLLQL+ VSRSEAFE S MSKR LV+AALEA+ S
Sbjct: 238 TRDQRLDPAHGHGMDNPPHPPHPKPAARQNEAEASTPRGSTLRRPRARADAHTDMRRRGGTGARGRPAGVDQSASSKEIGPIRSPVVARLGEAVSEVPPVLPSTLAEDGVDEEDDEAFPALPPASGPRNTPGELLAPVQPPPVVTAAAGHVALDYSSLKDRLAIEAAAAAKAAAESSGALGGT---AEGDDFSRLSVLPSVGSGRGGEAKPGSTSSAILPVSSDLRVLEGCSPGSMGTDGDVSRGISALQSQSPKLPSPPSRQAVAANSVTRC-ASAETAALRARLRDRWFRLEAARKAQRQREAAERALMTAEDCATLGSAASVLGWNGGDGNHSSAEEGMRSGSGENHDEGEAKGRRAS-----------------------SSHTAMTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLPMGTNTSSPLNQNECSRGISAIASIPAAEAELIEAAETASCRPETTQVGAELSGEDGGR------------ASC---GGGGGLPAVTGEHVYAACQAGMAGLLNDLLVRSGGRAADGKDKLRRTPLHLAAEAGSLECVSLLLKQGTRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLMTMANSNQAWKSSAPSSRDNSAPYSMVVMSGQASRARGNATGKRRALQSPMNPGSSNSARANGGKGNGVPVPALSPLHEAAASGQPETLSLLLQLGVSLEERDAAAGVGGDTPLGRAVRAGQIDCARILLDAGAMVGRENARXXXXXXXXXXXXXXXXXXXXXXXXA---PLDGGKSNGRLTGADGRAPTGPREKMMARRRVEPLELALREGQLACAAALIEGGAHINERTLRAVKLQPSGTEVTEDKSVAQGRQVIYAGTSPGESRRGGGWSG-NGGAGSAGTPATTLPLQADILQRLSPEVPEISDSAPPDGGGLEVDPEYDCDMLDGVSVDIRETWRDKDLARREPSAGGSKETAAEGEAATRPGRPVEYVGGLRPTLGECDIDLVLEDGSRLPAHSCLLAAFSGTFCDLFLRRHGRCSRRTCPAA--RGGNYSKRQPV---PGASEVAAAAADGREMDQRTRSRDVHHLLAGHDPPGQGRSATSEHQRQTSPSISEAAVAAAAFAATATVENTAWWAPPVIDWGPGRGEVSVRFWGAGTMSAVVKHVYTGQPPSNMHADGLGRLLVASVSLRMNRLIRQVEHLLSDRLAPQKGKARSLQHAEAARLLRAARVLRATDLEKRCTLYMQANGVFPAVMKLRRELVVPSLNTLDVTRGLARLSNSGYLGSGPAYAWSSSGAVSTSSASATVAAAKLAVDLSLRKRAVD---FDQLVPLLLDTVRFITWCTSTLSIGRQERAVLLTAALADACPQESPRSQNDAPDPLAAPQRRRPIPPNLRGCCDAVRCDGDRWNAD-------RPAVPLVSNVSAFSHGMGWLLRTGTVADVVLVLPEQPSHSDAMPPATVIEDG----EEDEKNYSGNRENLSPGGRVGVQSSER--GAHSADSAVDSPARVSPGGPVKDEGSGRPATD-SRKMEGTTKDQLVNSRFLAHSMVLASRSEKFSAMLRFVQGQDGNSRTYADSVDGSSTDDDIFTDADTPEREHR---------NREEPPWGDVEQGEAAGHNQGEAVDNIGKDGEVSQPPRIDSRRPSPPSDRRCHCRRRPRRNTAPREMELHSPILTPQSLGLFLEFLYTGVLDTSLSTRELSELALIADEYLVPDLIRQAEALLVECLVRRGDVRYSLQVTASRNAGDYSFDSTTFNGTTTVQSKREEDTESAPLELLQLGVSLALPDLSAAAARAVLLQLERVSRSEAFEQSSMSKRELVMAALEAMCS 2069 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1272.1 >prot_C-linearis_contig11.1272.1 ID=prot_C-linearis_contig11.1272.1|Name=mRNA_C-linearis_contig11.1272.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1668bp MPAPMPAVTRPGSLDYSALAERLAIEMAAAASAAAEAVSSSSGAAGSTAGback to top mRNA from alignment at C-linearis_contig11:2110418..2119617- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1272.1 ID=mRNA_C-linearis_contig11.1272.1|Name=mRNA_C-linearis_contig11.1272.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9200bp|location=Sequence derived from alignment at C-linearis_contig11:2110418..2119617- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:2110418..2119617- >mRNA_C-linearis_contig11.1272.1 ID=mRNA_C-linearis_contig11.1272.1|Name=mRNA_C-linearis_contig11.1272.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=10008bp|location=Sequence derived from alignment at C-linearis_contig11:2110418..2119617- (Chordaria linearis ClinC8C monoicous)back to top |