mRNA_C-linearis_contig11.1208.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1208.1
Unique NamemRNA_C-linearis_contig11.1208.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1208.1 vs. uniprot
Match: D8LGG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG6_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 3.610e-65
Identity = 130/187 (69.52%), Postives = 142/187 (75.94%), Query Frame = 3 
Query:  177 MARIEAEIELEHLRREEDGSAMTARDQVRTVTAGWLIGVALXXXXXXXXXCLFSPALGFMLVLPFVSGGVIGGLVYSQLRDKMRSLRREPQXXXXXXXXXXXRRDSSADKEEFLRQLQGRSDPSATCLHIGVDNSSLPSGSFLRRVAMGATHVLVRCALDVTVAVAYXXXXXXXXXXATGDGRAQDR 737
            M RI+AEIELE L+REE GSAMTAR+QVRTVTAGWL+GV L  XXXXXXXCLFSPALGFM+VLPFVSGGVIGGLVYSQLRDK+RSL R P            R   S DK+EFLRQLQGRSDPSAT LH+G D+S+LPSGSFLRRVA+GATH+LVR ALDVT A A             G GR Q R
Sbjct:    1 MGRIQAEIELEQLQREESGSAMTARNQVRTVTAGWLVGVILGWXXXXXXXCLFSPALGFMMVLPFVSGGVIGGLVYSQLRDKIRSLSRRPMPMEQEHQQPRGR-SRSEDKQEFLRQLQGRSDPSATYLHMGTDDSTLPSGSFLRRVALGATHILVRSALDVTAAAA-----CAMLGLGRGGGRTQGR 181
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGG6_ECTSI3.610e-6569.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:993482..997855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003970.1
Exons6
Model size1852
Cds size696
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1208.1prot_C-linearis_contig11.1208.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 994594..997811 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927438.7217474-UTR-C-linearis_contig11:993481..9945931622927438.7217474-UTR-C-linearis_contig11:993481..994593Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 993482..994593 -
1690879700.5264485-UTR-C-linearis_contig11:993481..9945931690879700.5264485-UTR-C-linearis_contig11:993481..994593Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 993482..994593 -
1622927438.8344417-UTR-C-linearis_contig11:997811..9978551622927438.8344417-UTR-C-linearis_contig11:997811..997855Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 997812..997855 -
1690879700.605032-UTR-C-linearis_contig11:997811..9978551690879700.605032-UTR-C-linearis_contig11:997811..997855Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 997812..997855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927438.7331321-CDS-C-linearis_contig11:994593..9947321622927438.7331321-CDS-C-linearis_contig11:994593..994732Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 994594..994732 -
1690879700.5372052-CDS-C-linearis_contig11:994593..9947321690879700.5372052-CDS-C-linearis_contig11:994593..994732Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 994594..994732 -
1622927438.746311-CDS-C-linearis_contig11:995422..9955771622927438.746311-CDS-C-linearis_contig11:995422..995577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 995423..995577 -
1690879700.5470576-CDS-C-linearis_contig11:995422..9955771690879700.5470576-CDS-C-linearis_contig11:995422..995577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 995423..995577 -
1622927438.7652967-CDS-C-linearis_contig11:996008..9960951622927438.7652967-CDS-C-linearis_contig11:996008..996095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 996009..996095 -
1690879700.5579891-CDS-C-linearis_contig11:996008..9960951690879700.5579891-CDS-C-linearis_contig11:996008..996095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 996009..996095 -
1622927438.7818463-CDS-C-linearis_contig11:996665..9968331622927438.7818463-CDS-C-linearis_contig11:996665..996833Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 996666..996833 -
1690879700.5683837-CDS-C-linearis_contig11:996665..9968331690879700.5683837-CDS-C-linearis_contig11:996665..996833Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 996666..996833 -
1622927438.8000927-CDS-C-linearis_contig11:997205..9972681622927438.8000927-CDS-C-linearis_contig11:997205..997268Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 997206..997268 -
1690879700.5795012-CDS-C-linearis_contig11:997205..9972681690879700.5795012-CDS-C-linearis_contig11:997205..997268Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 997206..997268 -
1622927438.8163998-CDS-C-linearis_contig11:997727..9978111622927438.8163998-CDS-C-linearis_contig11:997727..997811Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 997728..997811 -
1690879700.59163-CDS-C-linearis_contig11:997727..9978111690879700.59163-CDS-C-linearis_contig11:997727..997811Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 997728..997811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1208.1

>prot_C-linearis_contig11.1208.1 ID=prot_C-linearis_contig11.1208.1|Name=mRNA_C-linearis_contig11.1208.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=232bp
MAAACIEEQELTAQRDAVVSLCKDLQEKIRVQAEEYEARTEAAEMARIEA
EIELEHLRREEDGSAMTARDQVRTVTAGWLIGVALGWAAGLVLGCLFSPA
LGFMLVLPFVSGGVIGGLVYSQLRDKMRSLRREPQQQQQQQQQVGGRRDS
SADKEEFLRQLQGRSDPSATCLHIGVDNSSLPSGSFLRRVAMGATHVLVR
CALDVTVAVAYAVLGIGGGGGATGDGRAQDR*
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mRNA from alignment at C-linearis_contig11:993482..997855-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1208.1 ID=mRNA_C-linearis_contig11.1208.1|Name=mRNA_C-linearis_contig11.1208.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4374bp|location=Sequence derived from alignment at C-linearis_contig11:993482..997855- (Chordaria linearis ClinC8C monoicous)
ATCATCAACAGCACAAGCAAGAGGAGAGGAGCGGCCGCTACGAGATGGCA
GCGGCGTGTATTGAAGAGCAAGAGCTCACCGCCCAGCGTGATGCGGTAGT
TTCTCTGTGTAAAGATCTACAGGAGAAGGTGAGCAGGATTGAATTGATTT
GCCCAGCAGTTTGTACGCGGAGTAACTCAACTGCAACCCACAAATTGCTT
GCAACACACAACCACGGCATTACACACCCACGCCAAGACAACTGCAACCC
ACAAATTGCTTGCAACACACAACCACGGCATTACACACCCACGCCAAGAC
TTGTAGCTAGGAATCGATTTCCTTTGATTCGTATACATTCTGGACCAACT
CAAACTCGTTCCACAAAAAAGGTGTCTACAATACTCTTTTTCCAACAATC
TGGCTCTACAGCAGGGTGGCTCCGCAAAGACGCCACCAAACAGGTGGAAT
CACCTCTACCGCTCCTTTTCGTCCATTCGCTGAATGGCTCTCTCCCTCAC
TCTCCCTCCCTTTCCCCCCATCTATCTCCCTCCCACCCCTCCCCTCCACC
TCCCTTGCCCGTCTATGTACCAACGTCCAACGGCCAGATTCGAGTGCAGG
CCGAAGAGTACGAAGCTCGAACAGAAGCGGCGGAAATGGCCCGGATAGAG
GTACGCCATGATGACACGACACACAGCAAGAGCTACCCCACTAAGAGCTG
CAAGCAGCCTAGCAGCTCACGCCAGCCTCTCTCATGGTTGCACTCCGCAG
CCAATTCGAAACTCGCACACATGCTGTAGTACGTGGGGGCACATGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTTCTCAGATTAACTC
TCTAGTTCGAAACACCCGTTGGGGGTCCGTCATCGCTATACAGGGCACAC
CGACGCCGCGGAAGAACGAAGTAGAAAATGCGCGGTACCACGGAGGCATT
TGACGACCGCTGGATGAACTCCACCAAACACCAACAACCAACAACACGAC
GCATTTACCAACACGCCTTCAGGCTGAAATCGAGCTAGAACATCTTCGGC
GAGAAGAGGACGGGAGCGCCATGACCGCGAGGGATCAGGTCCGCACGGTC
ACGGCGGGATGGCTGATCGGAGTGGCTCTCGGTTGGGCGGCCGGCCTGGT
CCTGGGATGCCTCTTCTCGCCGGCGCTCGGCTTCATGCTGGTAGGCCTGT
CTCACCGAAGCCAAGCTTTCTCGTTGCCACCCGCTAGTAGACAGTCGCCC
CATCTAATTGACGCTGCTCTAAAGGAAAAGGGGGTTGTGTTTTTTTCGCC
ACGAGCGGCATAGTGATACCTGTGATCGTCTCATGTCTGCACAACGCACG
AGGTACAGCAGCCTGTGGAATCGCATGTGTGCACAGCCACCTAACTTGGC
CAGCGAAGTGGGGTGCCGTATGGTGTCACGAAAAACCGCGATTCTCTACG
AGGAGGTGGGCGGAATTTCACCGGCCTGACTGGCGTAAAGCTGCTTGCCC
GCCTATCGGTGTGGCGGGTAACGGAGAGGTTTCGACCGCCGCAGAAGGCG
GTATTTTTTTCACCCGGCGCCCCAGCTGTCGATGTTGAAACCAGACCAAC
AGGCGGTGGTACAGAAGTTGGCGCGTTCGACGTGCCTCTCGGGACACAGC
AATTGGGTGTGTCCTGTCCGGCGAACGTTGGGTCTGGCCCCTGCATTCTC
CGTGCTTTGGAAGATGCTGACATGCGGGAAACTATTGTACTCCTACGTCA
TCGCGCGCAGGTGCTTCCGTTTGTATCGGGCGGCGTGATTGGTGGGTTGG
TCTACTCGCAGCTCAGGGACAAGATGCGATCGCTTCGACGAGAGCCGGTG
AGAAAAGCTGAGGTATAAGTACAAAGCTCGACTGCCGTCGTCGTCGTCGT
TGTCGTCGTGGCTGTTGTTGCTGGTCCGCTGGTGGGGAGACGAACTGCGG
TACTCACAGAAATGCCGGCCCTTTCGGGGCTCGGAAAGCTTCACGTGGCT
GTGTCCCGTCTCCCCCGGCTGCTAAACCCCCCTTGCGGTTCATTGAGCTG
CTGCCTCTCAGCTGGTTGGATGTCTGCTAATGGCGTCGCACCTCTACTTC
CGTTTTATTTGCAGCGCCTCTCGTGCGCTAATGTGTTCAATTCCCACCCT
ACAGTATTGCCCCCACCTTTCTTTCGGGTGTTGCCCGGCGTTCGTTTGTC
CTTGTCGCCCCCCCCCGGTTCCACTTTAACTAGATACCGTGGGAGCAGCA
GCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGGTGGGAGGAAGGAGAGACAGCTCTGCAGACAAAGAAGAGTTCCTG
CGGCAGCTGCAGGGCCGGTCCGATCCGTCGGCGACCTGCCTGCACATCGG
CGTGGACAACTCTTCCCTCCCGTCCGGATCATTGTAAGCCCTCTCGCGTG
CCCGGTTTGGCTCGATTTTGGGTAGTTCTACGCCCGAAGACTTGTGCCCC
AATGGTTCTCACCAAAAGTCTGCTGCATCTCGCCCCCCTCCCCCCACTGC
TAACCGTGTTAAGTGGTGCGGATGCGAGTAGCTACGCAGAGTGCATATTT
TTTTGTGGGACGTTTTTTGTGAAGCTTGCTTGTGTTGTGCTTTGTATGGG
AGAAGAGAGTGGGAGTCTTGCTCCTCAGCAACTCTGCAAGGCTGGGGCGA
TTTACGCGCGTTTTATGAGTGACGTGTCAGGACTGTGCTGGTTACAGTTA
AGAGCGTGGGTTTCTTTTCTCCTTTGTAGCATTGCTTCATCCACGCCCAA
TTCCCGTTTTGTTCGCTTTTGTCTAACACTGCGTCCTTGTCAATGGGCTA
TAAATTACGGAAAGCTCCCTCGCGTTGTCTTGCTCTCTTAATTTGCTCGG
TATGCTGTTGTTAGCTTGGCCTTGTGTTTTTTTCTTTTTTTTCTCGTGCT
GTGGGAGCGCACGCAGAAAGACCGACCCAACTCTCCCTCTTAGCGCCTCT
TCCTCCACCCCCCTGCGTTTTACCGCCGCTCTTTCTCCGACCCCTGTCCC
TCGAAACGCCCGCCGCTGTGTTTTGTTCTTGTGTTTTGCGTGGTGCTTTC
GCCCTCTTTGTGTGCGTGTACAGCCTGCGGAGAGTCGCGATGGGCGCCAC
TCACGTGCTTGTCAGGTGTGCTCTAGACGTAACTGTAGCCGTGGCCTACG
CAGTCCTCGGTATTGGCGGCGGCGGCGGTGCAACGGGGGACGGCCGGGCA
CAAGACAGATGACTGGGGCTGTGCATCGGCAGGTTTAAACGATATGATGT
ATATCGAAGATCGGCGCAGCCGATATAACGATATTTGTTCGATATATCGG
CTACACCGATACAAGTATATCGAACAAATATCGGCGAGCGCAGCGAGCAC
AGGCGAGCTGAGGCGCGAACGCGCTCGAAGCTCGCCCGTGCGAACCCCCT
TAGCCCCCTCGGCTGGTGAGGGGCCCTGCCGGAGGTGCCCCCGGAGGACC
CCCCTGGAGGCGCCCCGCCGGAGGCGCTTTTTTACGCGATTTGGCTTCGC
TAGAAAAATATTTTTTGGGTGATTTGGGGCCACTTCGATCATTCCATTTT
TGTGGGGTGACATACTGAAAACGCTAGAAATCTTGAAAACTGCCAAGAAT
GAATGAAAGATGAATGATCATGTGTATATTTTTTTTGCGGGGCTCCGTAT
GTGTATATTTTGAAATATATGCCACCATTTCGATTCACGGAACCTCTCCC
AAAATATCGGCCCGCATATCGGGGCTGGCGATAGATATTCGATTTGAAAT
ACGAAGTATCGACCGATAATATTAAAGGCATCGGCTCCGATACAGAGCCC
TACAGATGACAGAAGTAAAGAACGGAGTACGGGAGTATTCAACTAGGTCT
GACCAACGAAGCTCTTCGCTGCTTGACAAATTTTCCGTTGTCGTAGCCTT
CTATGGAACGGAGCTGTATGTTTGGATCGCTGACGGTCAGCATGTACCTT
CAATGTGGGAGAAATTCGAGCGCCATCGCAAACGCGACGGGTTGTTGTTT
TCCCGCTAGAGCACCTGGCTTTCACGAGTTCTCGCCTGATGCGTGGGCCC
CATTTCCCCAGGTCAGTCTACTTATCTCTTGAGATTTCTTCGAAATTTTG
CTGCTGGTGTCTGGTAATCTAAAGTTTACGCGTTTCATGGTCTTGGTGTG
CCAGAAACACAGCAGTTTTGCTTGCATGGATGAGAGTGTAACCCCCCCTG
CTCCTTACGTTTGCGTGCGTGTACTACCTACTAGCCTTGAGAGTTACGTC
TTGCGCGGGCTTGAAGCCGGCTGCACTTGTGTGACGCGTACGGTTGAGCC
GCGTGCCAAAAATTGCGTTGCTGT
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Coding sequence (CDS) from alignment at C-linearis_contig11:993482..997855-

>mRNA_C-linearis_contig11.1208.1 ID=mRNA_C-linearis_contig11.1208.1|Name=mRNA_C-linearis_contig11.1208.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at C-linearis_contig11:993482..997855- (Chordaria linearis ClinC8C monoicous)
ATGGCAGCGGCGTGTATTGAAGAGCAAGAGCTCACCGCCCAGCGTGATGC
GGTAGTTTCTCTGTGTAAAGATCTACAGGAGAAGATGGCAGCGGCGTGTA
TTGAAGAGCAAGAGCTCACCGCCCAGCGTGATGCGGTAGTTTCTCTGTGT
AAAGATCTACAGGAGAAGATTCGAGTGCAGGCCGAAGAGTACGAAGCTCG
AACAGAAGCGGCGGAAATGGCCCGGATAGAGATTCGAGTGCAGGCCGAAG
AGTACGAAGCTCGAACAGAAGCGGCGGAAATGGCCCGGATAGAGGCTGAA
ATCGAGCTAGAACATCTTCGGCGAGAAGAGGACGGGAGCGCCATGACCGC
GAGGGATCAGGTCCGCACGGTCACGGCGGGATGGCTGATCGGAGTGGCTC
TCGGTTGGGCGGCCGGCCTGGTCCTGGGATGCCTCTTCTCGCCGGCGCTC
GGCTTCATGCTGGCTGAAATCGAGCTAGAACATCTTCGGCGAGAAGAGGA
CGGGAGCGCCATGACCGCGAGGGATCAGGTCCGCACGGTCACGGCGGGAT
GGCTGATCGGAGTGGCTCTCGGTTGGGCGGCCGGCCTGGTCCTGGGATGC
CTCTTCTCGCCGGCGCTCGGCTTCATGCTGGTGCTTCCGTTTGTATCGGG
CGGCGTGATTGGTGGGTTGGTCTACTCGCAGCTCAGGGACAAGATGCGAT
CGCTTCGACGAGAGCCGGTGCTTCCGTTTGTATCGGGCGGCGTGATTGGT
GGGTTGGTCTACTCGCAGCTCAGGGACAAGATGCGATCGCTTCGACGAGA
GCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTGGGAGGAAGGAGAGACA
GCTCTGCAGACAAAGAAGAGTTCCTGCGGCAGCTGCAGGGCCGGTCCGAT
CCGTCGGCGACCTGCCTGCACATCGGCGTGGACAACTCTTCCCTCCCGTC
CGGATCATTCAGCAGCAGCAGCAGCAGCAGCAGCAGGTGGGAGGAAGGAG
AGACAGCTCTGCAGACAAAGAAGAGTTCCTGCGGCAGCTGCAGGGCCGGT
CCGATCCGTCGGCGACCTGCCTGCACATCGGCGTGGACAACTCTTCCCTC
CCGTCCGGATCATTCCTGCGGAGAGTCGCGATGGGCGCCACTCACGTGCT
TGTCAGGTGTGCTCTAGACGTAACTGTAGCCGTGGCCTACGCAGTCCTCG
GTATTGGCGGCGGCGGCGGTGCAACGGGGGACGGCCGGGCACAAGACAGA
TGACCTGCGGAGAGTCGCGATGGGCGCCACTCACGTGCTTGTCAGGTGTG
CTCTAGACGTAACTGTAGCCGTGGCCTACGCAGTCCTCGGTATTGGCGGC
GGCGGCGGTGCAACGGGGGACGGCCGGGCACAAGACAGATGA
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