prot_C-linearis_contig11.1208.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1208.1
Unique Nameprot_C-linearis_contig11.1208.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length232
Homology
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BLAST of mRNA_C-linearis_contig11.1208.1 vs. uniprot
Match: D8LGG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG6_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 6.800e-70
Identity = 130/187 (69.52%), Postives = 142/187 (75.94%), Query Frame = 0 
Query:   45 MARIEAEIELEHLRREEDGSAMTARDQVRTVTAGWLIGVALXXXXXXXXXCLFSPALGFMLVLPFVSGGVIGGLVYSQLRDKMRSLRREPQXXXXXXXXXXXRRDSSADKEEFLRQLQGRSDPSATCLHIGVDNSSLPSGSFLRRVAMGATHVLVRCALDVTVAVAYXXXXXXXXXXATGDGRAQDR 231
            M RI+AEIELE L+REE GSAMTAR+QVRTVTAGWL+GV L  XXXXXXXCLFSPALGFM+VLPFVSGGVIGGLVYSQLRDK+RSL R P            R   S DK+EFLRQLQGRSDPSAT LH+G D+S+LPSGSFLRRVA+GATH+LVR ALDVT A A             G GR Q R
Sbjct:    1 MGRIQAEIELEQLQREESGSAMTARNQVRTVTAGWLVGVILGWXXXXXXXCLFSPALGFMMVLPFVSGGVIGGLVYSQLRDKIRSLSRRPMPMEQEHQQPRGR-SRSEDKQEFLRQLQGRSDPSATYLHMGTDDSTLPSGSFLRRVALGATHILVRSALDVTAAAA-----CAMLGLGRGGGRTQGR 181
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1208.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGG6_ECTSI6.800e-7069.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 124..231
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..94
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 100..123
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..74
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 95..99
NoneNo IPR availableTMHMMTMhelixcoord: 197..219
NoneNo IPR availableTMHMMTMhelixcoord: 101..123
NoneNo IPR availableTMHMMTMhelixcoord: 75..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:994594..997811 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1208.1mRNA_C-linearis_contig11.1208.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 993482..997855 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1208.1 ID=prot_C-linearis_contig11.1208.1|Name=mRNA_C-linearis_contig11.1208.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=232bp
MAAACIEEQELTAQRDAVVSLCKDLQEKIRVQAEEYEARTEAAEMARIEA
EIELEHLRREEDGSAMTARDQVRTVTAGWLIGVALGWAAGLVLGCLFSPA
LGFMLVLPFVSGGVIGGLVYSQLRDKMRSLRREPQQQQQQQQQVGGRRDS
SADKEEFLRQLQGRSDPSATCLHIGVDNSSLPSGSFLRRVAMGATHVLVR
CALDVTVAVAYAVLGIGGGGGATGDGRAQDR*
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