mRNA_C-linearis_contig109.1103.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A6H5L442_9PHAE (Peptidase_S26 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L442_9PHAE) HSP 1 Score: 387 bits (995), Expect = 2.230e-128 Identity = 247/378 (65.34%), Postives = 273/378 (72.22%), Query Frame = 1
Query: 7 ANQGIYPGVEYRILEMSIFPTIPESPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------RADLDAEPTSLLASARDAPEGAFEDGGLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRDDIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGW---LPQIGSRGGGGGERNAGAGSEITREGPAGL-GTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDGA--FVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFGLLR 1101
+NQGIYPGVEYRILE+S+FPT PT XXXXXXXXXXXX + DLDAEPT++LASARDAP +F+DG LVFTMRPIYPLV RLER DWPV VPAREFPVMLTPFSYNAATAWAA TTSLSLL+VGFV SQALT SVINSHSMEPTLQVGDVVLVEKVSRS +V+ +DIV+ VL+++VS AGG L+PSDLFVKRV L GDTVTVSADGSVDVR AGG LP+ +R GG G I +G AG G+ A GG +A + K ALPDSVLQRITR+DEKVL FVLGDNPAASMDSRVWGQLD+GEIVGHALLRV PPRSFGLL+
Sbjct: 166 SNQGIYPGVEYRILEISVFPTARTPPTGDSTKASSDSAAAVAPYLSSXXXXXXXXXXXXXXXXXXXQPDLDAEPTAVLASARDAPPESFDDGSLVFTMRPIYPLVARLERGDWPVRVPAREFPVMLTPFSYNAATAWAAFTTSLSLLSVGFVLSQALTLSVINSHSMEPTLQVGDVVLVEKVSRSFLVKPNDIVYFRPPPVLQDIVSRAGGTLSPSDLFVKRVAALSGDTVTVSADGSVDVR---AAAGGGITRLPKGTNRADNGGSAAGGESDVILGDGVAGQEGSAAAVAAAKGGTLA---------EEKVALPDSVLQRITRLDEKVLPSGSVFVLGDNPAASMDSRVWGQLDKGEIVGHALLRVFPPRSFGLLQ 531
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A835YRZ1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ1_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.740e-40 Identity = 119/288 (41.32%), Postives = 135/288 (46.88%), Query Frame = 1
Query: 217 LASARDAPEGAFEDGGLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRDDIVFXXXXXVLREVVSSAGGA-LNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDGAFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLP 1077
L S DAP AFE G L+ +RPIYPL+ RLER WPV V AR+ P+ LT F+YN ATAWAAL LT S I S SMEP L+ GDVVLVEKVSR A++RR ++VF LR V+ AGGA L DLFVKRV L GD V V+ DG VR G LP+ A + RE AFVLGDNP S+DSRVWG L IVG LLRV P
Sbjct: 20 LDSVADAPPNAFEAGDLLLQLRPIYPLIPRLERA-WPVTVAARDVPIALTAFAYNVATAWAALXXXXXXXXXXXXXXXTLTLSFIPSRSMEPVLRPGDVVLVEKVSRGALLRRGEVVFFAPPPALRAAVADAGGAPLRGGDLFVKRVAALTGDDVAVARDGETRVRGALVRGAGDLPR------------AARSRLLLRE-----------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXAGSAFVLGDNPLHSVDSRVWGDLPYSNIVGRPLLRVFP 271
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A0G4EFP7_VITBC (Mitochondrial inner membrane protease subunit n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFP7_VITBC) HSP 1 Score: 142 bits (358), Expect = 4.580e-35 Identity = 121/289 (41.87%), Postives = 147/289 (50.87%), Query Frame = 1
Query: 268 VFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVR---RDDIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTV-----SADGSVDVRP-PSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVL-DGA-FVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFGLLR 1101
V T+RP Y LV++LER WPV + E P+ LTP YN AT + L ++ LLAV VASQ + I S+SMEPTL GDV+LVEKVSR +VR DIV LR V AGG L P DLFVKRV GD VTV + +G V P P P P IGS A A + R L GRG ++ Q + DE VL GA +VLGDNP S+DSR+WG+L E EIVGH ++R+ P FG +R
Sbjct: 160 VITVRPRYRLVDKLERQ-WPVTIAMSEVPIFLTPRMYNTATLISTLLSAAQLLAVALVASQFCSLYYIPSYSMEPTLHKGDVLLVEKVSR--LVRPPKNGDIVLFNPPEQLRTFVRQAGGQLAPGDLFVKRVAATQGDRVTVDNGLPTINGHTYVYPEPEEP-----PTIGSD-----APPARADGSMQR------------------------LAIGRGFAWPYAGEAPSQWVA--DECVLGSGAVYVLGDNPVRSVDSRLWGELRESEIVGHPVIRLFPWGRFGPVR 409
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A448ZBV4_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBV4_9STRA) HSP 1 Score: 134 bits (336), Expect = 6.160e-31 Identity = 101/294 (34.35%), Postives = 144/294 (48.98%), Query Frame = 1
Query: 229 RDAPEGAFEDGGLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRD---DIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQR-ITRVDEKVLDG--AFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFG 1092
RD E G + ++P+YPLV +LER WPV V R+ P + TP YN +A+ +L T+ S L V F+ SQA++ I S SM+PTL+VGDV+LV+KVS R++ D+V L+E+V+ GG L+ DLFVKR+ PGD VTV DG VDV G ++ GR A P ++++ I ++K++D FV+GD + S+DSRVWG L+ IVG ++R+ P FG
Sbjct: 380 RDGRERFTSCPGADYELKPVYPLVAQLERP-WPVRVNERDIPKLFTPSMYNLLSAFGSLFTAASGLFVAFLLSQAISLFFIPSKSMDPTLKVGDVLLVDKVSSRTPFRKNEVGDMVLFSPPSRLQEIVAKNGGNLSSRDLFVKRIAASPGDRVTVYKDGKVDVN---------------------------GQDVV---------------------------AGRRDLCEAEPLRLIEKYIEPREDKIIDQKEVFVMGDCSSVSVDSRVWGSLEAENIVGRPIVRIWPLDRFG 618
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A7S1CZJ0_CYCTE (Mitochondrial inner membrane protease subunit n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZJ0_CYCTE) HSP 1 Score: 112 bits (281), Expect = 2.290e-25 Identity = 92/277 (33.21%), Postives = 123/277 (44.40%), Query Frame = 1
Query: 271 FTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRD---DIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDGAFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFG 1092
+ ++PIYPLV++LER WPV V E P + T YN +A +L T+ L V + SQ ++ I S SM+PTL VGDVV+VEKVS + D++ L+E+V S+GG + DLFVKRV P VTV +DG V + E ++ E P GL + + T V D FV+GD + S+DSRVWG L EI+G L RV P FG
Sbjct: 20 YDLKPIYPLVDQLERP-WPVTVNEAEIPRLYTVGMYNTVSALGSLFTATFGLGVAYALSQMISLFFIPSRSMDPTLAVGDVVVVEKVSPRIFKSNNHVGDVILFHPPSRLQEIVKSSGGRIGNRDLFVKRVAAEPTQKVTVGSDGKVLID---------------------EMELQEKRDMCSEEPLGL-----------------------------IERYIEPGTTEVQS---DEVFVMGDCSSVSIDSRVWGPLPNKEIIGKPLFRVWPIERFG 242
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A1Z5JWA6_FISSO (Mitochondrial inner membrane protease subunit n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWA6_FISSO) HSP 1 Score: 107 bits (267), Expect = 5.700e-22 Identity = 95/294 (32.31%), Postives = 138/294 (46.94%), Query Frame = 1
Query: 262 GLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRD---------DIVFXXXXXVLREVVSSAGGA-LNPSDLFVKRVTGLPGDTVTVS-ADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDG---AFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFGLLR 1101
G+ + ++PIYPLV +LER WPV V R+ P + TP YN +A +L T+++ L F+ SQA++ VI S SMEPTLQVGDV+LV+KV+ + + +I+ L+++V +GG L +LFVKRV PG T+ ++ A G+V++ G P ER G E TR ++++ R ++ G VLGD + S+DSRVWG L IVG LLRV P G ++
Sbjct: 261 GVDYELKPIYPLVQQLERL-WPVRVNERDIPKLYTPAMYNGISAVGSLLTAVTGLLAAFLVSQAISIFVIPSRSMEPTLQVGDVLLVDKVTPRLTNKLNLNKYNDWVGNIILFHPTESLQDIVLKSGGRKLTDRELFVKRVAAGPGSTLKITDASGAVEID-------GRKPL---------ERRDFCGEEPTR---------------------------------------LIEKFLRQGDEFQVGPKQVAVLGDCSSVSIDSRVWGPLPTDNIVGRPLLRVWPLSRVGQIQ 498
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A1Z5KRR1_FISSO (Mitochondrial inner membrane protease subunit n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRR1_FISSO) HSP 1 Score: 102 bits (253), Expect = 1.390e-20 Identity = 94/291 (32.30%), Postives = 134/291 (46.05%), Query Frame = 1
Query: 262 GLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRRD---------DIVFXXXXXVLREVVSSAGGA-LNPSDLFVKRVTGLPGDTVTVS-ADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDG---AFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFG 1092
G+ + ++PIYPLV +LER WPV V ++ P + TP YN +A +L T++ L F+ SQA++ VI S SMEPTLQVGDV+LV+K++ + + IV L+++V +GG L +LFVKRV PG T+ ++ A G+V++ G P ER G E TR ++++ R ++ G VLGD + S+DSRVWG L IVG LLRV P G
Sbjct: 129 GVDYELKPIYPLVQQLERL-WPVRVNEKDIPRLYTPAMYNGLSAIGSLFTAVMGLLAAFLVSQAISIFVIPSRSMEPTLQVGDVLLVDKLTPRLTNKLNLNKYSEWVGYIVLFRPTESLQDIVLQSGGRKLTDRELFVKRVAAGPGSTLKITDASGAVEID-------GRKPL---------ERRDFCGEEPTR---------------------------------------LIEKFLRQGDEFQVGPKQVAVLGDCSSVSIDSRVWGPLPTDNIVGRPLLRVWPLSRVG 363
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A7S1BHK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BHK1_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 4.810e-16 Identity = 51/128 (39.84%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 250 FEDGGLVFTMRPIYPLVNRLERDDWPVLVPAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSRSAIVRR---DDIVFXXXXXVLREVVSSAGGAL 624
F+ G+ + ++P+YPLV +ER WPV + +E ++TP YN TA+ A++T++S L F+ S A++ I S SM+PTL+VGDV+LVEK+S + R D+V LR++V+ GG L
Sbjct: 104 FDQPGVDYEVKPVYPLVASMERQ-WPVRIAEKELTKIITPLQYNILTAFGAVSTAVSTLVTFFLISLAVSLFFIPSKSMDPTLRVGDVLLVEKISPRLPLHRYAVGDVVMFRPPPALRDIVARNGGRL 230
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A1E7FW23_9STRA (Mitochondrial inner membrane protease subunit (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW23_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.120e-15 Identity = 71/218 (32.57%), Postives = 98/218 (44.95%), Query Frame = 1
Query: 469 INSHSMEPTLQVGDVVLVEK----VSRSAIVRR---DDIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVL---DGAFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLPPRSFG 1092
I S SM+PTLQ+GDV+LV+K +SR R +DI+ L+E+V+ +GG L+ DLFVKR+ PGD VTV ADG V+V EN VV GR A P ++++ + ++ + D FV+GD + S+DSRVWG LD I G +LR+ P FG
Sbjct: 2 IPSKSMDPTLQIGDVLLVDKLSPRISRQISPRNSKVNDIILFSPPSELQEIVTKSGGNLSSRDLFVKRIAASPGDKVTVYADGDVEVND----------------------------------------------EN--VV------VGRRDLCEAEPLRLIEKYIQPNKDQIIDSDKVFVMGDCSSVSVDSRVWGPLDTENIRGRPILRLWPMSRFG 165
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Match: A0A7S1VCS1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VCS1_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 6.090e-15 Identity = 74/226 (32.74%), Postives = 102/226 (45.13%), Query Frame = 1
Query: 409 TSLSLLAVGFVASQALTFSVINSHSMEPTLQVGDVVLVEKVSR---SAIVRRDDIVFXXXXXVLREVVSSAGGALNPSDLFVKRVTGLPGDTVTVSADGSVDVRPPSRPAGGWLPQIGSRGGGGGERNAGAGSEITREGPAGLGTEGAAQGENGGVVASGALGTGRGQGKAALPDSVLQRITRVDEKVLDGAFVLGDNPAASMDSRVWGQLDEGEIVGHALLRVLP 1077
T+++ L F SQA++F VI S SM+PT QVGDVVLVEKVS +A DD+V L ++V S GG ++ DLFVKR+ PGD V V + S D+ ++ A S TR+ + R + + + + T V D FVLGD S+DSRVWG L +IVG ++R+ P
Sbjct: 5 TAVTGLLTAFAISQAVSFFVIPSQSMDPTFQVGDVVLVEKVSPRLPNAQYNADDVVLFHPPSPLLDIVQSTGGRISSRDLFVKRIAATPGDQV-VLPENSGDILVNNKDA----------------------STNTRDRH---------------------MCKVRDSAQDLMKRYLKPQTTNVPP---DEVFVLGDCADVSIDSRVWGTLPTRDIVGRPVMRIWP 183 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig109.1103.1 >prot_C-linearis_contig109.1103.1 ID=prot_C-linearis_contig109.1103.1|Name=mRNA_C-linearis_contig109.1103.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=368bp RLANQGIYPGVEYRILEMSIFPTIPESPTTTTTTTTVATSSGPPPPSFSNback to top mRNA from alignment at C-linearis_contig109:191914..193346- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig109.1103.1 ID=mRNA_C-linearis_contig109.1103.1|Name=mRNA_C-linearis_contig109.1103.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1433bp|location=Sequence derived from alignment at C-linearis_contig109:191914..193346- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig109:191914..193346- >mRNA_C-linearis_contig109.1103.1 ID=mRNA_C-linearis_contig109.1103.1|Name=mRNA_C-linearis_contig109.1103.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2208bp|location=Sequence derived from alignment at C-linearis_contig109:191914..193346- (Chordaria linearis ClinC8C monoicous)back to top |