mRNA_C-linearis_contig106.1006.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.1006.1
Unique NamemRNA_C-linearis_contig106.1006.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: A0A6H5JSG7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE)

HSP 1 Score: 402 bits (1033), Expect = 3.540e-136
Identity = 190/267 (71.16%), Postives = 219/267 (82.02%), Query Frame = 3
Query:  447 CRKGERGPMFDPCERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPIGTPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFIYLREGESPAEQGLD 1247
            CRKG RGP FDPCERVAVFM+RLGGD T RQTA+QF LS+GTVSQVTLEVAR V++ LR + V WPSP EQ+ MS  WELEK LR VIG IDGSHI+ LAP D+LQ ++Y+YK FYSISLLAIVDN+G+FRWF SGAPG+C DSG+L +T FY  V+ +  +P   R+L  +GACILGDSAFAES WMRTPIG P  R ERFFNYKHSS RFRVEHAFGRLKKKFRAL  GLDC L HC T++NACV+LHNFI++ EGESPA+ G+D
Sbjct:    2 CRKGRRGPPFDPCERVAVFMWRLGGDSTVRQTALQFGLSDGTVSQVTLEVARRVDKYLRDECVWWPSPEEQRDMSAAWELEKHLRGVIGAIDGSHIKILAPPDSLQTSYYNYKHFYSISLLAIVDNEGMFRWFCSGAPGACADSGVLTDTAFYEMVQEDQAQPVSSRQLFANGACILGDSAFAESPWMRTPIGKPDNRAERFFNYKHSSMRFRVEHAFGRLKKKFRALLNGLDCHLDHCPTIVNACVILHNFIFMCEGESPADHGVD 268          
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: A0A6H5JA50_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA50_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 3.030e-92
Identity = 136/234 (58.12%), Postives = 165/234 (70.51%), Query Frame = 3
Query:  402 TFKELVKRLYGTTDFCRKGERGPMFDPCERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPIGTPQTRPERFFNYKHSSQRFRVEHAFG 1103
            TF+ LV  L+GTT   R    GP  DPCERVAVF++R+G     R TA  FN++EG V   T+ VAR + +RL  +YVRWPSP EQ ++S  WE EK LR V+GGIDGSHI+  AP ++ QLA+Y+YK+FYSI LLAIVDN+GLFRW  SG  GSCGDSG+LQ T FY   + E  KP   RR+  +GACILGDSAFAE  WMRTP   P +R +R+FN+ HSS R RVEHA G
Sbjct:   14 TFRRLVHALFGTTYVFRVNNTGPYIDPCERVAVFLFRVGHGSGVRATASHFNMAEGAVVNWTMSVARRIRKRLLCEYVRWPSPEEQSEISTAWEKEKSLRKVVGGIDGSHIKIPAPTEHQQLAYYNYKKFYSIILLAIVDNRGLFRWTCSGCAGSCGDSGVLQHTKFYKAAQREQSKPVDERRIFANGACILGDSAFAEGPWMRTPYTMPSSREQRYFNFMHSSMRMRVEHALG 247          
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: UPI0014255786 (protein ALP1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255786)

HSP 1 Score: 129 bits (324), Expect = 1.300e-29
Identity = 91/273 (33.33%), Postives = 134/273 (49.08%), Query Frame = 3
Query:  402 TFKELVKRLYGTTDFCRKGER--GPMFDPCERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARV-ESETPKPPKRRRLMYDGA--CILGDSAFAESAWMRTPIGTPQTRP--ERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHN 1199
            TFK +V  L     F  K E   GP F    RVA+ +YRL       +TA QF  ++ T   +  EV   +E  L   ++ +P+  E KK  ++++++ G   V+G IDG+HI  +AP+D  Q  +Y+ K +YSI L  +VD  G+F     G PGS  D+ +   ++F   + + +  KP     L        ILGD A+     +  P      +P  +  FNYK S  R  VEHAFGRLK ++R L K  +        ++ AC  LHN
Sbjct:  120 TFKYVVDEL---RPFIEKSENNNGPTFSTEWRVAMTLYRLSSGIPFNRTANQFGSAKSTACTIYHEVCEAIEAVLMPKFITFPTGQELKKNIEKFKMKGGFPQVVGAIDGTHIAIIAPRDQPQ-DYYNRKEYYSIVLQGVVDANGMFIDTFCGMPGSVNDARVFHISNFGEAIKDGKIFKPYIEETLNGTNIPPLILGDGAYPLLTNLMRPFPNRPNKPREQTRFNYKLSQCRVIVEHAFGRLKGRWRILLKRNEHETHKLRPVVQACCTLHN 388          
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: UPI0010FB0173 (protein ALP1-like n=2 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB0173)

HSP 1 Score: 123 bits (308), Expect = 4.280e-28
Identity = 70/240 (29.17%), Postives = 125/240 (52.08%), Query Frame = 3
Query:  486 ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPIGTPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFI 1205
            +++AV +Y+L      R       + + TV +   +V + + + +  +Y+  P   E K +++ +E + G+  +IG IDG+HIE + P +  +  F + K + S ++LA+VD+ G FR  V+  PGSC D+ +L+++  Y    +  PK  +    M     I+GD A+    W+        +  +  FN   +S R  VE AFGRLK ++R L + ++C       ++ AC +LHNF+
Sbjct:   41 KQIAVALYKLASTAEYRVIGNTMGIHKSTVKKCVYKVVKAINQIMLQNYIYMPHEKEAKFIAQNFEEKCGIPQIIGSIDGTHIEIIPPSEGCK-DFVNRKGWPSYNVLAVVDHNGRFRNIVAKHPGSCHDAAVLKDSTLYKNSNTIIPKETQNINGMEIPFIIVGDPAYPLLPWLLKGYSGSLSAEQESFNVYLNSARVSVEMAFGRLKARWRILHQ-INCDYIFAPEIIVACCILHNFV 278          
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: A0A1Y1KPL4_PHOPY (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KPL4_PHOPY)

HSP 1 Score: 118 bits (296), Expect = 1.000e-27
Identity = 67/197 (34.01%), Postives = 110/197 (55.84%), Query Frame = 3
Query:  627 DYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPI--GTPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFIYL 1211
            ++++WP+  E   + K++   K +RNVIG IDGSHIE   PK++ Q+ + + K ++SI L  +V+   +F     G PGS  D+ +L+++  Y+ + +E+P        +Y+   +LGDSA+    W+ TPI      T  +  +NY+HSS R  +E+AFG LK +FR LRK  +  +        A  ++HN   L
Sbjct:   12 NFIQWPNEVECVDIEKKFAKVKNIRNVIGAIDGSHIEICRPKEH-QVDYCNRKGYHSIILQGVVNRDKVFLDVYCGEPGSMHDARVLRKSPLYSAIGTESP--------IYNKYLLLGDSAYPTLPWLMTPIKDNGHLTEQQHIYNYEHSSTRICIENAFGLLKGRFRRLRKYDNINIQFIVKCTIAACIIHNICIL 199          
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: UPI00193D326F (protein ALP1-like isoform X1 n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193D326F)

HSP 1 Score: 123 bits (308), Expect = 1.110e-27
Identity = 73/240 (30.42%), Postives = 125/240 (52.08%), Query Frame = 3
Query:  486 ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPIGTPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFI 1205
            ++VAV +Y+L      R       + + +V +    V + + + +  +Y+  P+ +E   ++  +E +  +  +IG IDG+HIE + PK+  +  F + K + S ++LAIVD+ G FR  V   PGSC D+ +L+E+  Y   ++  PK  +    M     I+GD A+    W+        +  E  FN   +S R  +E AFGRLK ++R L K ++C  +    ++ AC VLHNF+
Sbjct:  142 KQVAVALYKLASTAEYRVIGNAMGIHKSSVKKCLYRVIKAINKVMLQNYINMPNENEANLIASNFENKCFIPQIIGSIDGTHIEIIPPKEGYR-DFINRKGWPSYNVLAIVDHNGRFRNIVIKHPGSCHDAAVLKESMLYKDADTLIPKKTRNINGMEIPFIIVGDPAYPLLPWLIKGFSGSLSSEEESFNVYLNSARVSIEMAFGRLKARWRILHK-INCDYSFAPEIIAACCVLHNFL 379          
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: UPI00193DE84E (protein ALP1-like n=2 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193DE84E)

HSP 1 Score: 122 bits (305), Expect = 2.810e-27
Identity = 72/240 (30.00%), Postives = 125/240 (52.08%), Query Frame = 3
Query:  486 ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPIGTPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFI 1205
            ++VAV +Y+L      R       + + +V +    V + + + +  +Y+  P+ ++   ++  +E +  +  +IG IDG+HIE + PK+  +  F + K + S ++LAIVD+ G FR  V   PGSC D+ +L+E+  Y   ++  PK  +    M     I+GD A+    W+        +  E  FN   +S R  +E AFGRLK ++R L K ++C  +    ++ AC VLHNF+
Sbjct:   95 KQVAVALYKLASTAEYRVIGNAMGIHKSSVKKCLYRVIKAINKVMLQNYINMPNENKANLIASNFENKCFIPQIIGSIDGTHIEIIPPKEGYR-DFINRKGWPSYNVLAIVDHNGRFRNIVIKHPGSCHDAAVLKESMLYKDADTLIPKKTRNINGMEIPFIIVGDPAYPLLPWLIKGFSGSLSSEEESFNVYLNSARVSIEMAFGRLKARWRILHK-INCDYSFAPEIIAACCVLHNFV 332          
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: A0A2S2ND01_SCHGA (Putative nuclease HARBI1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2ND01_SCHGA)

HSP 1 Score: 119 bits (299), Expect = 2.250e-26
Identity = 86/277 (31.05%), Postives = 133/277 (48.01%), Query Frame = 3
Query:  402 TFKELVKRLYGTTDFCRKGERGPMFDPC---ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGAC----ILGDSAFAESAWMRTPIGTPQTRPE--RFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFI 1205
            TF  + + +   T  C+K E     DP    ER+ + +  L      RQ A+ F +S+ +VS + +EV + +   LR  ++R P+  + +  +  +  +    N IG IDG HI    P ++  + +Y+YK F+SI LLAIVD    F     GA G   DSG+L  +  Y R+E  T K P  + L           +GD AF     +  P    Q   E   ++NY+ S  R  VE AFG    KFR L+K ++ ++ +   ++ A  +LHN I
Sbjct:   78 TFDYIAQNI---TPICQK-EYSNFQDPISVEERLLITIRYLATGIAFRQIAMSFRVSKTSVSYIVIEVCQAIWTTLRDVHMRKPTIKDFENTADAFYNKWNFPNCIGSIDGKHIRVKCPNNSGSM-YYNYKHFFSIVLLAIVDANYRFVLIDIGAYGKDSDSGVLNNSKIYHRIEKGTLKVPSAKLLPSTTNMAPFVFIGDEAFPLREHLLRPFPKKQLSDEDKSYYNYRLSRARMTVECAFGIAASKFRILQKSIETKIENADHIVKAICILHNVI 349          
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: A0A7M5XN08_9CNID (DDE Tnp4 domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XN08_9CNID)

HSP 1 Score: 119 bits (298), Expect = 3.690e-26
Identity = 81/250 (32.40%), Postives = 125/250 (50.00%), Query Frame = 3
Query:  486 ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKG---LRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESET--PKPPKRRRLMYDGACILGDSAFAESAWMRTPIG--TPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFIYLR 1214
            +RVAV ++RL    + R  +  F + + T+ ++  +    + +  R +++ +P    +  ++ E   E     L  V+G IDG+H+E L P    ++ ++S KR Y+I    +V    +F  FV+G PGS  D+  LQ TD + + E+ET    P K    M     ILGD A+  S W+  P     P    +R FN   SS R  VE  FG LK ++R L K LD  L +   ++  CVVLHN   +R
Sbjct:  124 KRVAVSIWRLSNGASYRTVSKTFGVGKTTIVEINQDFVIALLQHTR-EFIHFPETELETAIAIEKFHESAGCELPQVVGAIDGTHMEILKPDSESRVDYFSRKRKYTIMSQGVVGANSIFLDFVTGFPGSIHDARALQFTDLFRKAENETILTTPKKVIDGMRIRPLILGDGAYPASTWLLKPYPHIAPLDAEQRNFNRALSSSRCTVEIGFGLLKSRWRCLLKRLDYNLENIPGVVMVCVVLHNICQIR 372          
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: UPI00196341A0 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like n=2 Tax=Polypteridae TaxID=8289 RepID=UPI00196341A0)

HSP 1 Score: 118 bits (295), Expect = 1.010e-25
Identity = 76/251 (30.28%), Postives = 129/251 (51.39%), Query Frame = 3
Query:  486 ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVS-GAPGSCGDSGILQETDFYARVESETPKPPKRRRL--MYDGACILGDSAFAESAWMRTPIGTPQ--TRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFIYLREGE 1223
            +RVA+ ++RL  +   R  +  F + + T   +   V+ ++ E+L + Y++ PS  + + + + +  + G     G IDG+HI  LAP ++    +Y+ K FYS+ L  +VD++  F W ++ G PG   D+ +   +  Y R +S T  P    R   +     +LGD+A+    W+  P    Q  T  +  FN + S  R  VE  FGRLK ++R LRK  DC + + + ++ AC +LHNF  +   E
Sbjct:  138 QRVAICVWRLATNVEFRTISHLFGIGQSTAVTIANHVSSIIVEKLLSVYIKTPSAHDFRNIIQGFRDQWGFPQCGGAIDGTHIGILAPPES-PADYYNPKGFYSVILQGVVDHRLCF-WDINVGWPGKVHDARVFGNSSLYERGQSGTLFPNITERFGGIDVPVVMLGDAAYPLLPWLMKPYPENQQMTPAQLTFNNRLSKARMTVERTFGRLKGRWRCLRKRYDCHINNINNIIAACCILHNFCEINNEE 386          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSG7_9PHAE3.540e-13671.16DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JA50_9PHAE3.030e-9258.12DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
UPI00142557861.300e-2933.33protein ALP1-like n=1 Tax=Anneissia japonica TaxID... [more]
UPI0010FB01734.280e-2829.17protein ALP1-like n=2 Tax=Nylanderia fulva TaxID=6... [more]
A0A1Y1KPL4_PHOPY1.000e-2734.01DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
UPI00193D326F1.110e-2730.42protein ALP1-like isoform X1 n=1 Tax=Solenopsis in... [more]
UPI00193DE84E2.810e-2730.00protein ALP1-like n=2 Tax=Solenopsis invicta TaxID... [more]
A0A2S2ND01_SCHGA2.250e-2631.05Putative nuclease HARBI1 (Fragment) n=1 Tax=Schiza... [more]
A0A7M5XN08_9CNID3.690e-2632.40DDE Tnp4 domain-containing protein n=1 Tax=Clytia ... [more]
UPI00196341A01.010e-2530.28protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:443556..446958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score137.9
Seed ortholog evalue6.8e-30
Seed eggNOG ortholog400682.PAC_15712177
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs38NKY@33154,3BK0T@33208,KOG4585@1,KOG4585@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons4
Model size1256
Cds size786
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.1006.1prot_C-linearis_contig106.1006.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 443556..445081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.466171-CDS-C-linearis_contig106:443555..4441111622927402.466171-CDS-C-linearis_contig106:443555..444111Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 443556..444111 -
1690879680.3139648-CDS-C-linearis_contig106:443555..4441111690879680.3139648-CDS-C-linearis_contig106:443555..444111Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 443556..444111 -
1622927402.475622-CDS-C-linearis_contig106:444851..4450811622927402.475622-CDS-C-linearis_contig106:444851..445081Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 444852..445081 -
1690879680.3252714-CDS-C-linearis_contig106:444851..4450811690879680.3252714-CDS-C-linearis_contig106:444851..445081Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 444852..445081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.4868762-UTR-C-linearis_contig106:445081..4451531622927402.4868762-UTR-C-linearis_contig106:445081..445153Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 445082..445153 -
1690879680.3361804-UTR-C-linearis_contig106:445081..4451531690879680.3361804-UTR-C-linearis_contig106:445081..445153Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 445082..445153 -
1622927402.496665-UTR-C-linearis_contig106:445437..4457011622927402.496665-UTR-C-linearis_contig106:445437..445701Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 445438..445701 -
1690879680.3487084-UTR-C-linearis_contig106:445437..4457011690879680.3487084-UTR-C-linearis_contig106:445437..445701Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 445438..445701 -
1622927402.5076144-UTR-C-linearis_contig106:446824..4469581622927402.5076144-UTR-C-linearis_contig106:446824..446958Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 446825..446958 -
1690879680.3610098-UTR-C-linearis_contig106:446824..4469581690879680.3610098-UTR-C-linearis_contig106:446824..446958Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 446825..446958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.1006.1

>prot_C-linearis_contig106.1006.1 ID=prot_C-linearis_contig106.1006.1|Name=mRNA_C-linearis_contig106.1006.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=262bp
MFDPCERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERL
RADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLA
FYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVES
ETPKPPKRRRLMYDGACILGDSAFAESAWMRTPIGTPQTRPERFFNYKHS
SQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFIYLREG
ESPAEQGLDPDQ
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mRNA from alignment at C-linearis_contig106:443556..446958-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.1006.1 ID=mRNA_C-linearis_contig106.1006.1|Name=mRNA_C-linearis_contig106.1006.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3403bp|location=Sequence derived from alignment at C-linearis_contig106:443556..446958- (Chordaria linearis ClinC8C monoicous)
CAGCCTCCAAAGCGCGACAGGGGCTCTCTCCCATCTCCTCCTACCAACAC GCGAGTGTCTGTGGTCTTGCCCCAGTGAAGAGGGTCTCAGGACGCATAAT CGGGAGGAGCCGTCATAAATAATACACGCACCAGGTGGGGCCGAAGAAGA TTCCACACCCATGTTTACTTTGCGTCCCGCGGTCAAGTCTGAGCCGCTTT CCAGGGCCGTAGGAGCGCGCGGTTTGAGCGAGACGCCTGCCCCTTTAGGA AACAGCAGTCGAGACAGGCACACGCCGGTTTTCCAGTAAACTTTACGCTC TGCACCAAGAATGGGCGGCGCGACAGCCCACATTTCGTGTTCGGAGCCTC TTCGGAGCACACCACCTGGAGCACACAAAAAGCAAAAAAGCAGCACCTCC CACAGTCCCGTGAACACGCGCCGCCGCCTAGCGCTGTCGGGGTTCTTCTT GGCTCCTGTATAGTACCTGGTACAGTAGTATATATCTAAAGTATATGCAC TCTTTCTATAGATGGCACCTGAAGGGTTATCTTGAAGCGGAGCTGCAGAT GTAGGGTTAAATGCACCTGCCAGGTCTGCTGGTCTAGATTTCAGTATACT GCTGGAGAGCAGCTCGTCTAGACTCCTACTTTACTAGTGTAATAGTCTCT ACTCTGTCTCTGCGGTGTAGGCCCCCGGGACTATGGGTGTACTGTTGTAG TGTTTTATGTACACGGACTAGTTTTACCAGACGACCGGCTGGGCGTGAGC ATCGGCTGCATCTGGGTTACTCTCTCTTGCCTCGCACATAATTGCTGCTG CGGCACGTACTTGCTGCTGCGCACGTAGCTGCTGCTGCGCGCGGTGCAGG TACGGCGGGCCGGTACTGTTGTAGACTGTAAATATCTGCCACGCCGACGA TGTGGAAACAATTCCTAGCCCTATTCGTGTGCACTTTTTCCGAACTCCAC GCAAGTACCATGATAGGGTTGGGAGTGCCTTCTGGCGGAACCTCCGAGGG CCCATCAATATAGCTGCCCTCAATTTTACGTGCGTGCTAATCCACTTTCG TAAATCTCGTTGTTGTACATAGCGTGCGAAAGCTCAAGCATTGCGTGATC AATCGACGAACGGTACAAATTAAAACTCCTGTTGTGTCACGAGAAGGTGC GTGTGCCACAAAGGACTGCATGGGTGTAAAGCCCGTGCGAAATCCTGACC TTGACGCTTATCGCTCCTTCTTGTCGGCCCGTTCCCCGCGTCTCTGTCTT CCCACAGAGAGCATCTGCTGCTCAGCCATGCCTTTCGGATCGGATGACGT CGCGGCCTTTATGTTGCTTGCGAGCATGATGTTCCTATGCGACGATGAAG ACGAGTTCCTACTGGAAGCTCTGCAGATGGCCGACTACAACGAATCGGGC GACTTCCTGGAGGGCTCGACGAGAACGGGGAAGCCCAAACCGCATGACGA GCGGTGGTGGGAGGAGAAATCGGCGAGACACCTGAGCAGCGCTCAGTTCA GGTCCTTTTTTTTAGGTGCAGGTGCGAACAGTTTATTATTTTACTTTCAG TGCAAAGGCGGGTTGCCGTATCGCCTAATACATGAGGTTGTCGCAGCACC GTACCCCGTCCCTCCTCCCGAGTGCCACCTATGCGCTAGATGTGGTACCG TTGAGCATGCCAATACTTGCAGATCAAACAAGGAAATGATGACCGCCTCC AGGCACCCCCACAGCCTCGTGGCCTTACCTTAAAATCAGGCAGGCATGCT TACATCGTTCTCGCTCTGCCTGTCAAACATGTCCACCTCCCAACTTGACA GGAAGCCTACGTTCAAAGAGCTAGTGAAGAGGCTGTATGGCACGACGGAC TTCTGCCGGAAGGGCGAACGAGGGCCCATGTTCGACCCGTGTGAGCGGGT TGCAGTGTTCATGTATCGGCTGGGGGGCGACTGCACCTGCAGACAGACCG CGATTCAGTTTAACCTGTCGGAGGGCACGGTGTCGCAGGTCACGCTCGAG GTTGCACGGCTGGTCGAGGAGCGTCTTCGGGCTGATTACGTCCGCTGGCC CAGTCCATCGGAGCAAAAGAAGATGTCGAAGGAATGGGAGCTGGAAAAGG GCCTTCGGTAAGTACACTGGCATTTAGCATGCGCACTTGTCACCCTTACG GCTATCCTTGCTAACGGCATATCTCGGGGGCGGCCAGGTATTTAGGGCGC CATAGGCTGGGCAAAGGGCATCGGTATGGTTGACATAGCGAGCCCTACTA AGAGGGATGTGGGGGTGCCAACTCAGATCGTTTCCCAGCGTCACACGTCA CCGGCTTGAAACCAGAAGCCCTATTGAGTGACGATGACATGCATGGCGAC AGGGTTGACCACATGAGAGGAAAGCTGGGATTTGACGCCTATCCGCCGTC TTGTTTTGGGACGATAGTTTCCCCCAACCCTTGATCTTTATTGAAGCCCG ACCCTACGAGACAGCTTCGGAGTCTGCGAGTCCCCGCCCACAACTACAGA CCCAGCACTTGTAGTCCCCCTATTCTGATATTTGAGCGTAGCGCCTGCGC CGTTGGTTGGAGTGACCGCAGGCTTGTTGTAGTTTGGGCTGACATTGGAG GGGGGAAACTGTCCCAATATGTTGCAATCGTCCCTCTGTCTAGCCAAACC TGGCGATATTACCGTCAGCACTGGCGCCACACGGAATAACTTCAGACCTT AAGTTCACTACCCCCCTCTGTCCCCGAAGAGTGCGCCATGTGTCGGCCTC GTTTTTCTCGCACCGCGAAAAGCGTTGGACACGTAGTTACAGCTGTTTCA TCTGCCTTGTCTCGCTTCCCTGTTATCTGTACGGTGTTTCTATGCAGGAA CGTGATCGGAGGGATCGACGGAAGTCACATCGAGACGCTCGCTCCGAAAG ACAACCTCCAGCTGGCGTTCTACAGCTACAAGCGCTTCTACTCCATTTCT CTGCTGGCCATCGTGGACAACCAGGGCTTGTTCAGGTGGTTTGTCTCCGG GGCGCCTGGCTCTTGCGGTGACAGCGGAATCCTACAAGAAACCGACTTCT ACGCCCGCGTGGAGTCGGAGACGCCTAAGCCGCCGAAGAGGCGTCGTCTT ATGTACGACGGCGCCTGCATCTTGGGAGACTCGGCCTTTGCCGAAAGCGC GTGGATGCGTACTCCCATCGGGACGCCCCAAACGAGACCCGAGCGTTTCT TCAACTACAAACACTCCAGCCAGCGATTTAGAGTGGAGCACGCCTTCGGC CGGCTGAAGAAGAAATTCCGCGCCCTTCGGAAGGGTCTAGACTGTCGCCT CGCGCACTGCTCAACCCTCCTCAACGCCTGCGTGGTTCTCCACAACTTCA TCTACCTGCGCGAGGGCGAGTCGCCGGCGGAGCAGGGCCTGGACCCTGAC CAG
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Coding sequence (CDS) from alignment at C-linearis_contig106:443556..446958-

>mRNA_C-linearis_contig106.1006.1 ID=mRNA_C-linearis_contig106.1006.1|Name=mRNA_C-linearis_contig106.1006.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1572bp|location=Sequence derived from alignment at C-linearis_contig106:443556..446958- (Chordaria linearis ClinC8C monoicous)
ATGTTCGACCCGTGTGAGCGGGTTGCAGTGTTCATGTATCGGCTGGGGGG
CGACTGCACCTGCAGACAGACCGCGATTCAGTTTAACCTGTCGGAGGGCA
CGGTGTCGCAGGTCACGCTCGAGGTTGCACGGCTGGTCGAGGAGCGTCTT
CGGGCTGATTACGTCCGCTGGCCCAGTCCATCGGAGCAAAAGAAGATGTC
GAAGGAATGGGAGCTGGAAAAGGGCCTTCGATGTTCGACCCGTGTGAGCG
GGTTGCAGTGTTCATGTATCGGCTGGGGGGCGACTGCACCTGCAGACAGA
CCGCGATTCAGTTTAACCTGTCGGAGGGCACGGTGTCGCAGGTCACGCTC
GAGGTTGCACGGCTGGTCGAGGAGCGTCTTCGGGCTGATTACGTCCGCTG
GCCCAGTCCATCGGAGCAAAAGAAGATGTCGAAGGAATGGGAGCTGGAAA
AGGGCCTTCGGAACGTGATCGGAGGGATCGACGGAAGTCACATCGAGACG
CTCGCTCCGAAAGACAACCTCCAGCTGGCGTTCTACAGCTACAAGCGCTT
CTACTCCATTTCTCTGCTGGCCATCGTGGACAACCAGGGCTTGTTCAGGT
GGTTTGTCTCCGGGGCGCCTGGCTCTTGCGGTGACAGCGGAATCCTACAA
GAAACCGACTTCTACGCCCGCGTGGAGTCGGAGACGCCTAAGCCGCCGAA
GAGGCGTCGTCTTATGTACGACGGCGCCTGCATCTTGGGAGACTCGGCCT
TTGCCGAAAGCGCGTGGATGCGTACTCCCATCGGGACGCCCCAAACGAGA
CCCGAGCGTTTCTTCAACTACAAACACTCCAGCCAGCGATTTAGAGTGGA
GCACGCCTTCGGCCGGCTGAAGAAGAAATTCCGCGCCCTTCGGAAGGGTC
TAGACTGTCGCCTCGCGCACTGCTCAACCCTCCTCAACGCCTGCGTGGTT
CTCCACAACTTCATCTACCTGCGCGAGGGCGAGTCGCCGGCGGAGCAGGG
CCTGGACCCTGACCAGGAACGTGATCGGAGGGATCGACGGAAGTCACATC
GAGACGCTCGCTCCGAAAGACAACCTCCAGCTGGCGTTCTACAGCTACAA
GCGCTTCTACTCCATTTCTCTGCTGGCCATCGTGGACAACCAGGGCTTGT
TCAGGTGGTTTGTCTCCGGGGCGCCTGGCTCTTGCGGTGACAGCGGAATC
CTACAAGAAACCGACTTCTACGCCCGCGTGGAGTCGGAGACGCCTAAGCC
GCCGAAGAGGCGTCGTCTTATGTACGACGGCGCCTGCATCTTGGGAGACT
CGGCCTTTGCCGAAAGCGCGTGGATGCGTACTCCCATCGGGACGCCCCAA
ACGAGACCCGAGCGTTTCTTCAACTACAAACACTCCAGCCAGCGATTTAG
AGTGGAGCACGCCTTCGGCCGGCTGAAGAAGAAATTCCGCGCCCTTCGGA
AGGGTCTAGACTGTCGCCTCGCGCACTGCTCAACCCTCCTCAACGCCTGC
GTGGTTCTCCACAACTTCATCTACCTGCGCGAGGGCGAGTCGCCGGCGGA
GCAGGGCCTGGACCCTGACCAG
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