mRNA_C-linearis_contig106.1003.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.1003.1
Unique NamemRNA_C-linearis_contig106.1003.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5JE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE40_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.090e-42
Identity = 70/98 (71.43%), Postives = 78/98 (79.59%), Query Frame = 2 
Query:    2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
            RSD  D RV  LA R+WH+DDISRASGDSG K MWR SKK GE  H RR+LM++GD+V RKFL+WPEY  LKAELL EDS+F DPGRT FL TRCGCL
Sbjct:   27 RSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCL 124
[Close]
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5JG47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG47_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 3.360e-42
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 2 
Query:    2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
            RSD  D RV  LA R+WH+DDISRASGDSG K MWR SKK GE  H RR+LM++GD+V RKFL+WPEY  LKAELL EDS+F DPGRT FL TRCGC 
Sbjct:   27 RSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFADPGRTLFLSTRCGCF 124
[Close]
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 5.360e-40
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 2 
Query:    2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
            R+D  D RV +LA R+WH+DDISRASGDSG + +WR SKK GE  H RR+LM++GD+V RKFL+WPEY  LKAELL EDS+F DPGRT FL TRCGCL
Sbjct:   27 RTDKMDERVMDLARRFWHSDDISRASGDSGTEAVWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTMFLSTRCGCL 124
[Close]
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.070e-38
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 2 
Query:    2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
            RSD  D RV  LA R+WH+DDISRASGDSG K MWR SKK GE  H RR+LM++GD+V  KFL+WPEY  LKAELL EDS+F DPGRT FL TRCGCL
Sbjct:   27 RSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCL 124
[Close]
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.880e-37
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 2 
Query:    2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
            RSD  D RV  LA R+WH+DDISRASGDSG K MWR SKK GE  H RR+LM++GD+V  KFL+WPEY  LKAELL ED++F DPGRT FL TRCGCL
Sbjct:  292 RSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCL 389
[Close]
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.940e-37
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 2 
Query:    2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
            RSD  D RV  LA R+WH+DDISRASGDSG K MWR SKK GE  H RR+LM++GD+V  KFL+WPEY  LKAELL ED++F DPGRT FL TRCGCL
Sbjct:  916 RSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCL 1013
[Close]
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5JJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.850e-33
Identity = 62/98 (63.27%), Postives = 70/98 (71.43%), Query Frame = 2 
Query:    2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
            RSD  D RV  LA R+WH+DDISRASGDSG            E  H RR+LM++GD+V RKFL+WPEY  LKAELL EDS+F DPGRT FL TRCGCL
Sbjct:   27 RSDKMDERVMGLARRFWHSDDISRASGDSG------------EEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFADPGRTLFLSTRCGCL 112
[Close]
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5KAT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT1_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 5.580e-32
Identity = 63/98 (64.29%), Postives = 71/98 (72.45%), Query Frame = 2 
Query:    2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
            RSD  D RV  LA R+WHT  +S      G K MWR SKK GE  HSRR+LM++GD+V RKFL+WPEY  LKAELL EDS+F DPGRT FL TRCGCL
Sbjct:  258 RSDKMDERVMGLARRFWHTAVLSYTL--VGTKAMWRPSKKAGEEYHSRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFADPGRTLFLSTRCGCL 353
[Close]
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.230e-27
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 2 
Query:    2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
            RSD T+P V  LA  +WH+DD+SRA+G+SGK  M++ SKK     H RR+LM  GD V R FLE   Y ALK+ LL +DS F DPGRTTFL TRCGCL
Sbjct:  281 RSDVTNPEVMALARAFWHSDDVSRATGNSGK-DMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCL 377
[Close]
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.840e-27
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 2 
Query:    2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
            RSD T+P V  LA  +WH+DD+SRA+G+SGK  M++ SKK     H RR+LM  GD V R FLE   Y ALK+ LL +DS F DPGRTTFL TRCGCL
Sbjct:  281 RSDVTNPEVMALARAFWHSDDVSRATGNSGK-DMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCL 377
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JE40_9PHAE2.090e-4271.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG47_9PHAE3.360e-4270.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI39_9PHAE5.360e-4068.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K491_9PHAE3.070e-3870.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE1.880e-3769.39Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE1.940e-3769.39MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JJU0_9PHAE7.850e-3363.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAT1_9PHAE5.580e-3264.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF90_9PHAE1.230e-2759.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E6_9PHAE1.840e-2759.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:429685..430157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size296
Cds size141
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.1003.1prot_C-linearis_contig106.1003.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 429685..429825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.309787-CDS-C-linearis_contig106:429684..4298251622927402.309787-CDS-C-linearis_contig106:429684..429825Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 429685..429825 -
1690879680.242426-CDS-C-linearis_contig106:429684..4298251690879680.242426-CDS-C-linearis_contig106:429684..429825Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 429685..429825 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.3203673-UTR-C-linearis_contig106:429825..4298901622927402.3203673-UTR-C-linearis_contig106:429825..429890Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 429826..429890 -
1690879680.2512639-UTR-C-linearis_contig106:429825..4298901690879680.2512639-UTR-C-linearis_contig106:429825..429890Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 429826..429890 -
1622927402.3297687-UTR-C-linearis_contig106:430068..4301571622927402.3297687-UTR-C-linearis_contig106:430068..430157Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 430069..430157 -
1690879680.2697783-UTR-C-linearis_contig106:430068..4301571690879680.2697783-UTR-C-linearis_contig106:430068..430157Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 430069..430157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.1003.1

>prot_C-linearis_contig106.1003.1 ID=prot_C-linearis_contig106.1003.1|Name=mRNA_C-linearis_contig106.1003.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=47bp
MISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL
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mRNA from alignment at C-linearis_contig106:429685..430157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.1003.1 ID=mRNA_C-linearis_contig106.1003.1|Name=mRNA_C-linearis_contig106.1003.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=473bp|location=Sequence derived from alignment at C-linearis_contig106:429685..430157- (Chordaria linearis ClinC8C monoicous)
AAGGAGCGACGCGACGGACCCACGTGTGACGGAGTTGGCAGGCCGGTACT
GGCACACGGATGACATCTCGCGTGCGTCAGGAGATTCAGGTATATAGTTG
TGTGAAAAGGTGACAACATTATCTTCTGCCGCTACTGCTCTCACTGCTCT
CGTTGTACCATGCGACTGCTTTCATAATCACAGCTTTCATTGGGTACTGC
TTTCATATTGGGCGCTGGTGATGTCTGTACCAACGATTCACCACACCTGC
TTCCCCTCCCAATCCAGGCAAAAAACAGATGTGGAGAGCGTCCAAAAAGG
AAGGCGAGGCGTAGCACTCCCGCCGAGAACTTATGATCTCTGGTGACAAG
GTGGTTCGTAAGTTTCTGGAGTGGCCGGAGTACCAGGCGCTGAAGGCGGA
GCTGCTGGCGGAAGATAGCACCTTCAAAGATCCTGGCCGGACAACTTTCT
TGCCAACGCGGTGCGGGTGTTTA
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Coding sequence (CDS) from alignment at C-linearis_contig106:429685..430157-

>mRNA_C-linearis_contig106.1003.1 ID=mRNA_C-linearis_contig106.1003.1|Name=mRNA_C-linearis_contig106.1003.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at C-linearis_contig106:429685..430157- (Chordaria linearis ClinC8C monoicous)
ATGATCTCTGGTGACAAGGTGGTTCGTAAGTTTCTGGAGTGGCCGGAGTA
CCAGGCGCTGAAGGCGGAGCTGCTGGCGGAAGATAGCACCTTCAAAGATC
CTGGCCGGACAACTTTCTTGCCAACGCGGTGCGGGTGTTTAATGATCTCT
GGTGACAAGGTGGTTCGTAAGTTTCTGGAGTGGCCGGAGTACCAGGCGCT
GAAGGCGGAGCTGCTGGCGGAAGATAGCACCTTCAAAGATCCTGGCCGGA
CAACTTTCTTGCCAACGCGGTGCGGGTGTTTA
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