mRNA_C-linearis_contig106.1010.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.1010.1
Unique NamemRNA_C-linearis_contig106.1010.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:514647..515334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size688
Cds size687
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.3917415-CDS-C-linearis_contig106:514646..5153331622927398.3917415-CDS-C-linearis_contig106:514646..515333Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 514647..515333 +
1690879677.1052272-CDS-C-linearis_contig106:514646..5153331690879677.1052272-CDS-C-linearis_contig106:514646..515333Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 514647..515333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.1010.1prot_C-linearis_contig106.1010.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 514647..515333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.1010.1

>prot_C-linearis_contig106.1010.1 ID=prot_C-linearis_contig106.1010.1|Name=mRNA_C-linearis_contig106.1010.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=229bp
QGDAPDPPSPKLITALSAGHCVYHWRSTDQIFVNIRLQHSSLSRITFVNE
ITGKAAWYAVCEFVQHAYPDQYCRLDKFLSADVLPTLPVSVANRFLRLVD
VLRTATIAPQPPLAQNHPGARATHRSTTSARPGARAGTDSRARTTSRDSA
TAVNRSRSRERAGRSSSRERAGRSRSHDQAGRGNREQPSRGSGHSVVDAC
SEDGRQQHRRSHRKGHQRQHHHARSRPPS
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mRNA from alignment at C-linearis_contig106:514647..515334+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.1010.1 ID=mRNA_C-linearis_contig106.1010.1|Name=mRNA_C-linearis_contig106.1010.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=688bp|location=Sequence derived from alignment at C-linearis_contig106:514647..515334+ (Chordaria linearis ClinC8C monoicous)
CAGGGAGATGCCCCCGACCCGCCCAGCCCGAAATTGATCACTGCGCTTTC
CGCTGGTCATTGCGTCTACCACTGGAGATCAACCGATCAGATCTTCGTCA
ATATTCGGCTTCAGCACTCATCACTTTCTCGCATCACATTCGTCAACGAG
ATCACCGGTAAAGCTGCGTGGTACGCGGTTTGCGAATTTGTCCAGCATGC
GTACCCAGATCAGTACTGCCGCCTCGACAAATTCCTGTCAGCGGATGTTC
TCCCCACCCTGCCGGTCTCGGTGGCTAACCGCTTCCTGCGGCTTGTCGAC
GTGCTCCGTACCGCCACCATCGCGCCTCAGCCCCCTTTGGCCCAGAACCA
CCCTGGAGCTCGGGCTACCCACCGTTCCACCACGTCTGCTCGTCCAGGTG
CTCGCGCCGGAACCGACTCCAGGGCCCGCACCACATCTCGCGACAGCGCT
ACCGCTGTCAACCGGAGCCGGAGCCGCGAGCGGGCGGGACGGAGCAGCAG
CCGCGAGCGGGCGGGCCGGAGCCGGAGCCACGACCAAGCGGGACGTGGGA
ATCGGGAGCAGCCCTCCCGCGGAAGCGGCCATTCTGTGGTCGACGCGTGC
AGCGAGGATGGTCGACAGCAGCACCGCCGTTCGCACCGCAAAGGACACCA
GCGCCAGCACCACCACGCTCGCTCGCGTCCGCCAAGCA
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Coding sequence (CDS) from alignment at C-linearis_contig106:514647..515334+

>mRNA_C-linearis_contig106.1010.1 ID=mRNA_C-linearis_contig106.1010.1|Name=mRNA_C-linearis_contig106.1010.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at C-linearis_contig106:514647..515334+ (Chordaria linearis ClinC8C monoicous)
CAGGGAGATGCCCCCGACCCGCCCAGCCCGAAATTGATCACTGCGCTTTC
CGCTGGTCATTGCGTCTACCACTGGAGATCAACCGATCAGATCTTCGTCA
ATATTCGGCTTCAGCACTCATCACTTTCTCGCATCACATTCGTCAACGAG
ATCACCGGTAAAGCTGCGTGGTACGCGGTTTGCGAATTTGTCCAGCATGC
GTACCCAGATCAGTACTGCCGCCTCGACAAATTCCTGTCAGCGGATGTTC
TCCCCACCCTGCCGGTCTCGGTGGCTAACCGCTTCCTGCGGCTTGTCGAC
GTGCTCCGTACCGCCACCATCGCGCCTCAGCCCCCTTTGGCCCAGAACCA
CCCTGGAGCTCGGGCTACCCACCGTTCCACCACGTCTGCTCGTCCAGGTG
CTCGCGCCGGAACCGACTCCAGGGCCCGCACCACATCTCGCGACAGCGCT
ACCGCTGTCAACCGGAGCCGGAGCCGCGAGCGGGCGGGACGGAGCAGCAG
CCGCGAGCGGGCGGGCCGGAGCCGGAGCCACGACCAAGCGGGACGTGGGA
ATCGGGAGCAGCCCTCCCGCGGAAGCGGCCATTCTGTGGTCGACGCGTGC
AGCGAGGATGGTCGACAGCAGCACCGCCGTTCGCACCGCAAAGGACACCA
GCGCCAGCACCACCACGCTCGCTCGCGTCCGCCAAGCCAGGGAGATGCCC
CCGACCCGCCCAGCCCGAAATTGATCACTGCGCTTTCCGCTGGTCATTGC
GTCTACCACTGGAGATCAACCGATCAGATCTTCGTCAATATTCGGCTTCA
GCACTCATCACTTTCTCGCATCACATTCGTCAACGAGATCACCGGTAAAG
CTGCGTGGTACGCGGTTTGCGAATTTGTCCAGCATGCGTACCCAGATCAG
TACTGCCGCCTCGACAAATTCCTGTCAGCGGATGTTCTCCCCACCCTGCC
GGTCTCGGTGGCTAACCGCTTCCTGCGGCTTGTCGACGTGCTCCGTACCG
CCACCATCGCGCCTCAGCCCCCTTTGGCCCAGAACCACCCTGGAGCTCGG
GCTACCCACCGTTCCACCACGTCTGCTCGTCCAGGTGCTCGCGCCGGAAC
CGACTCCAGGGCCCGCACCACATCTCGCGACAGCGCTACCGCTGTCAACC
GGAGCCGGAGCCGCGAGCGGGCGGGACGGAGCAGCAGCCGCGAGCGGGCG
GGCCGGAGCCGGAGCCACGACCAAGCGGGACGTGGGAATCGGGAGCAGCC
CTCCCGCGGAAGCGGCCATTCTGTGGTCGACGCGTGCAGCGAGGATGGTC
GACAGCAGCACCGCCGTTCGCACCGCAAAGGACACCAGCGCCAGCACCAC
CACGCTCGCTCGCGTCCGCCAAGC
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