mRNA_C-linearis_contig105.947.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.947.1
Unique NamemRNA_C-linearis_contig105.947.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 3.570e-78
Identity = 140/258 (54.26%), Postives = 168/258 (65.12%), Query Frame = 1
Query:    1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGDD 774
            VLDESHTIA    AT  V+ +V+NRRWCMTGTP   +FSD NGQL F GA GAFR  DLG+K PN +TQ E +AFLRRV+ RHSQGMKLG  S+LGLP ITHKVEVL LP KE  AY +FEK LQ +Y+ VRHRL   +GSHTM VLTLL+KFR+ACSGGQLL+G  A V   G +G+GP                                       S+DAFC +C+++ +SPV+T CGH+FCQ CI+  L K +D
Sbjct:  836 VLDESHTIATAKHATNEVRDIVSNRRWCMTGTPYISRFSDANGQLSFVGAGGAFRGSDLGDKGPNRETQVETVAFLRRVLFRHSQGMKLGGKSILGLPSITHKVEVLALPTKERKAYVDFEKGLQNDYIMVRHRLRTQKGSHTMEVLTLLSKFRQACSGGQLLVGDSATV---GYDGEGPTPA------------------------------------SVDAFCPICNDIIESPVRTKCGHIFCQACISSVLTKKED 1054          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: D7G0T2_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T2_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 2.180e-74
Identity = 136/258 (52.71%), Postives = 164/258 (63.57%), Query Frame = 1
Query:    1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQ-VCIAGALAKGD 771
            VLDESHTIA    AT  V+ +++NRRWCMTGTP   +FSD NGQL F GA  AFR  DLG+K PN +TQ E +AFLRRV+LRHSQGMKLG  S+LGLP ITHKVE L LP KE  AY +FEK LQ +Y+ VRHRL   +GSHTM VLTLL+KFR+ACSGGQLL+G  A V      GDG                                  +G+   S+DAFC +C+++ +SPV+T CGH FCQ VC+   L   +
Sbjct:  775 VLDESHTIATAKHATNEVRDIISNRRWCMTGTPYISRFSDANGQLSFVGAGSAFRGSDLGDKGPNRETQVETVAFLRRVLLRHSQGMKLGGKSILGLPSITHKVEALALPTKERKAYVDFEKGLQNDYIKVRHRLRTQKGSHTMEVLTLLSKFRQACSGGQLLVGDSATV-----GGDG----------------------------------DGSTPASVDAFCPICNDIIESPVRTKCGHTFCQLVCVMVVLVSSE 993          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 1.040e-71
Identity = 136/259 (52.51%), Postives = 165/259 (63.71%), Query Frame = 1
Query:    1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRD-RDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGDD 774
            VLDESHTIA  +  TT VK LV+NRRWCMTGTP   +FSD+NGQL F GA GAFR   DLG+K P  +TQ E +AFLRRV+LRHSQGMKLG +S+LGLP IT+KVEVL L  KE  AY +FE+ +Q +Y+ VRHRL   +GSHTM VLTLL+KFR+ACSGGQL++G  A     G  G  PA                                       +DAFCS+C+E+ ++PV+T CGH FCQ CI+  L K  D
Sbjct:  805 VLDESHTIASSNSTTTHVKTLVSNRRWCMTGTPYISRFSDVNGQLAFLGAEGAFRGGSDLGDKAPRRETQGETVAFLRRVLLRHSQGMKLGGHSILGLPTITNKVEVLTLSSKERKAYVDFEQGVQNDYIKVRHRLRTQKGSHTMEVLTLLSKFRQACSGGQLVVGASAA----GGGGSTPAT--------------------------------------LDAFCSMCNEILEAPVRTRCGHTFCQACISSVLTKSKD 1021          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: D7G0T8_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T8_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 6.790e-50
Identity = 93/126 (73.81%), Postives = 104/126 (82.54%), Query Frame = 1
Query:    1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQK 378
            VLDESH++  GS ++ AV++LVANRRWCMTGTP   KFSDLN QL F G AG+FRDRDLG+KRPN  TQ EV AFLRRVVLRHSQGMKLGANSLLGLP ITHKVEVL  P KEL+AY +FE  +QK
Sbjct:  750 VLDESHSLNHGSGSSNAVRELVANRRWCMTGTPFTSKFSDLNRQLSFVGVAGSFRDRDLGDKRPNTDTQVEVTAFLRRVVLRHSQGMKLGANSLLGLPTITHKVEVLTPPPKELEAYHDFENTIQK 875          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A835YWG4_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.590e-34
Identity = 88/269 (32.71%), Postives = 129/269 (47.96%), Query Frame = 1
Query:    1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLK-----------TQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGDD 774
            VLDESHTI   ++ + AV  +++NRRW ++GTP N    DL GQL         ++ D+G  R  L            +  + L FLR +++RH+Q   L    +LGLP I  +  ++     E  AY   EK LQ +Y +VR+ L +++GSH+M VLTL++++R+ACSGG + I   A  +     G G  +                                      MDA C +C+EL D+P  T C HVFC +CI   + K  D
Sbjct: 1038 VLDESHTIKTTNRLSAAVATIISNRRWLVSGTPANSNLGDLTGQL---------KNLDIGNLRSALAPLRYADSSNEISVRQALPFLRSIMMRHTQAQTLNGRHILGLPPINKEAVLVKWAPHERTAYVKLEKELQSQYKSVRYLLRSAKGSHSMKVLTLMSQYRQACSGGAI-INSAALAEAAAAGGQGATV--------------------------------------MDALCPICNELLDTPAITTCNHVFCHLCITAHVTKKAD 1258          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A7S2JRT6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRT6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.950e-15
Identity = 76/273 (27.84%), Postives = 110/273 (40.29%), Query Frame = 1
Query:    1 VLDESHTIAKG-SQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDL--------GEKRPN-LKTQAEVLAFLRRVVLRHSQGMK--LGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVR----HRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGD 771
            + DESH +    ++ T AVK+LVA  +WC+TGTP N   SDL  Q+ F G     R  D         G+  P   +     L  +R +++RHS           L+ LP  T +   + L K+E  AY   EK+  + Y  +R     R+ N +    +A+L  +   R AC+GG        PV    T                           + A+    D D   A       CS+C   FD    T CGH++C+ CI G +   D
Sbjct:  233 ICDESHCLRSSQTKQTQAVKRLVAENKWCVTGTPMNTNLSDLRSQMEFIGIENLNRMFDCFKGLGKTGGKNMPRCFRALERFLLVMRSMMIRHSMNQTNISSGRELMELPKKTERTIKITLTKEERKAYNTIEKSAMEFYRRLRMQEDERVFNRK---YLAILQKMIPMRLACAGG--------PVSQNATQ--------------------------KCADIDKGDKDRFHAKPDEHTECSICLNDFDDARATACGHIYCKECIEGVITAMD 468          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A368RZF4_SETIT (Uncharacterized protein n=4 Tax=Setaria TaxID=4554 RepID=A0A368RZF4_SETIT)

HSP 1 Score: 67.4 bits (163), Expect = 4.440e-9
Identity = 68/263 (25.86%), Postives = 114/263 (43.35%), Query Frame = 1
Query:    1 VLDESHTIAK-GSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFS-----GAAGAFRDRDLGE-KRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAP-VDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAK 765
            VLDE+ TI    +Q + A   L+A RRWC++GTP   K  DL     F          +F+D+   E  +  ++   ++ A LR ++LR ++   +    +L LP  T ++  +   ++E   Y   E+  ++++ A  +    +   +   +L LL + R+AC    LL GQ +  VD          +  Q  +E   D ++ L                    E   A CS+C +  +  V T CGHVFC  C+  +L  
Sbjct:  556 VLDEAQTIKNYRTQVSRACCGLMAERRWCLSGTPIQNKIDDLYSYFCFLKYEPYSKLSSFKDKIKYEITKDPVRGYKKLQAILRIILLRRTKETLIDGEPILKLPPKTIQLSKIDFTQEERAFYLTLEEGSRQKFKA--YDAAGTINENYANILVLLLRLRQACDHPLLLKGQESDLVDTKSIE-----MAKQLPKETVTDLLEKL--------------------ERGPAICSICSDPPEDAVVTTCGHVFCYQCVHESLTS 791          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A7S1DCX5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCX5_CYCTE)

HSP 1 Score: 63.9 bits (154), Expect = 3.460e-8
Identity = 53/192 (27.60%), Postives = 86/192 (44.79%), Query Frame = 1
Query:    1 VLDESHTIAKGSQA-TTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGA---------------------------AGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMK-LGANS-LLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQL 486
            + DESHT+  G+   + AV  LVA+ +WC+TGTP N   +DL  QL F G                              AF+++   E R         L F+R V++RHS   + +G ++ L+ LP +  +   +    ++   Y   E A ++ YL ++ +  N  G + + +   L   R ACSGG +
Sbjct:  113 ICDESHTMRTGATTQSAAVMGLVADHKWCVTGTPINTAITDLTSQLRFVGIENLSEYSTVFRKTIKVHLDSKRETSRRGNAFKNKVFEESR----RCGPFLFFMRNVMIRHSMKQQYIGTSTTLMSLPPMRERHIDVEFSAEDATEYAPLEVAARQFYLQIKEKGANFVGRNYLKLSQCLLPLRIACSGGHV 300          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: F7VQG7_SORMK (WGS project CABT00000000 data, contig 2.4 n=1 Tax=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) TaxID=771870 RepID=F7VQG7_SORMK)

HSP 1 Score: 60.8 bits (146), Expect = 7.020e-7
Identity = 46/170 (27.06%), Postives = 77/170 (45.29%), Query Frame = 1
Query:    1 VLDESHTIAKG-SQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGF------------SGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRAC 471
            +LDE+  +    + ++ AV+Q+ AN RWC+TGTP     S+L+  L F              A G+   R  G      K   ++ A L+ ++LR  +   +    +L LP     +E +   + E + Y N +   Q  Y   R+   N+ G +   +L LL + R+AC
Sbjct:  696 ILDEAQCVKNAKTMSSKAVRQVQANHRWCLTGTPMMNSVSELSALLRFLQIKPFCEERKFKEAFGSLDHRHKGRDFEKSKAMKQLQALLKAIMLRRMKTTVIDGKPILNLPPKVEHIEHVEFSEGEKEFYTNLQDKSQVIY--GRYVRNNTVGKNYSNILVLLLRLRQAC 863          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: V4UE68_CITCL (Uncharacterized protein n=4 Tax=Citrus TaxID=2706 RepID=V4UE68_CITCL)

HSP 1 Score: 55.8 bits (133), Expect = 3.130e-5
Identity = 70/274 (25.55%), Postives = 116/274 (42.34%), Query Frame = 1
Query:    1 VLDESHTIAKG-SQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAA--GAF--------RDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMK-LGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEY--LAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTN--------GDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGA 756
            VLDE+HTI    SQ + A   LVA+ RWC+TGTP      D+   L F      G +        +  + G++R  LK    V + L+ ++LR ++         +L LP    +V    L + E D Y    K  + ++     + R+L++  S    +L LL + R+ C    L++ +    D    N        G   AL G+ ++     ++  +    +  E+G+               C +C E F+  V TPC H  C+ C+ G+
Sbjct:  559 VLDEAHTIKSSKSQVSIAAAALVADYRWCLTGTPIQNNLEDIYSLLRFLRVEPWGNWAWWNKLIQKPYEEGDER-GLKL---VQSILKPIMLRRTKSSTDREGRPILVLPPADIQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYAS----ILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGE---------------CPICLEAFEDAVLTPCAHRLCRECLLGS 809          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KW09_9PHAE3.570e-7854.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T2_ECTSI2.180e-7452.71Helicase ATP-binding domain-containing protein n=1... [more]
D7G0S9_ECTSI1.040e-7152.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T8_ECTSI6.790e-5073.81Helicase ATP-binding domain-containing protein n=1... [more]
A0A835YWG4_9STRA1.590e-3432.71SNF2 family N-terminal domain-containing protein n... [more]
A0A7S2JRT6_9STRA9.950e-1527.84Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A368RZF4_SETIT4.440e-925.86Uncharacterized protein n=4 Tax=Setaria TaxID=4554... [more]
A0A7S1DCX5_CYCTE3.460e-827.60Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
F7VQG7_SORMK7.020e-727.06WGS project CABT00000000 data, contig 2.4 n=1 Tax=... [more]
V4UE68_CITCL3.130e-525.55Uncharacterized protein n=4 Tax=Citrus TaxID=2706 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:185612..190148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.1
Seed ortholog evalue4.5e-66
Seed eggNOG ortholog2880.D7G0T2
KEGG koko:K15173
KEGG Pathwayko04918,map04918
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021
Exons6
Model size776
Cds size774
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.947.1prot_C-linearis_contig105.947.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 185613..190148 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927394.391867-CDS-C-linearis_contig105:185612..1856481622927394.391867-CDS-C-linearis_contig105:185612..185648Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 185613..185648 -
1690879674.5588439-CDS-C-linearis_contig105:185612..1856481690879674.5588439-CDS-C-linearis_contig105:185612..185648Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 185613..185648 -
1622927394.4007359-CDS-C-linearis_contig105:186348..1866211622927394.4007359-CDS-C-linearis_contig105:186348..186621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 186349..186621 -
1690879674.5724857-CDS-C-linearis_contig105:186348..1866211690879674.5724857-CDS-C-linearis_contig105:186348..186621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 186349..186621 -
1622927394.4090114-CDS-C-linearis_contig105:187314..1874701622927394.4090114-CDS-C-linearis_contig105:187314..187470Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 187315..187470 -
1690879674.5823183-CDS-C-linearis_contig105:187314..1874701690879674.5823183-CDS-C-linearis_contig105:187314..187470Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 187315..187470 -
1622927394.450243-CDS-C-linearis_contig105:187834..1879551622927394.450243-CDS-C-linearis_contig105:187834..187955Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 187835..187955 -
1690879674.5931659-CDS-C-linearis_contig105:187834..1879551690879674.5931659-CDS-C-linearis_contig105:187834..187955Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 187835..187955 -
1622927394.4684758-CDS-C-linearis_contig105:189057..1891531622927394.4684758-CDS-C-linearis_contig105:189057..189153Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 189058..189153 -
1690879674.6026952-CDS-C-linearis_contig105:189057..1891531690879674.6026952-CDS-C-linearis_contig105:189057..189153Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 189058..189153 -
1622927394.485161-CDS-C-linearis_contig105:190056..1901481622927394.485161-CDS-C-linearis_contig105:190056..190148Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 190057..190148 -
1690879674.6107306-CDS-C-linearis_contig105:190056..1901481690879674.6107306-CDS-C-linearis_contig105:190056..190148Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 190057..190148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.947.1

>prot_C-linearis_contig105.947.1 ID=prot_C-linearis_contig105.947.1|Name=mRNA_C-linearis_contig105.947.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=258bp
VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGA
AGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGI
THKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLL
TKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDG
SAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIA
GALAKGDD
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mRNA from alignment at C-linearis_contig105:185612..190148-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.947.1 ID=mRNA_C-linearis_contig105.947.1|Name=mRNA_C-linearis_contig105.947.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4537bp|location=Sequence derived from alignment at C-linearis_contig105:185612..190148- (Chordaria linearis ClinC8C monoicous)
GTTCTGGACGAGAGCCACACAATCGCCAAGGGATCCCAAGCTACGACCGC CGTCAAGCAGCTCGTGGCCAACCGCCGCTGGTGCATGACCGGGTATGACA TTAGCACGCAAACTTTGTTTGGCAATAGTCATCGTGTCGATGCCGCTATG GTGTAAATAAAGCAATGCCCCAATTTTACAGCCGTTTAGCTCAGGCTTGT GCCGAATAGCTTACTTGCGAAACGTGTCGGTTGCATCACAACTATCTATC TGTGATAGTGCCAAGAACAATGCCTTCCGCCCACGTTGTAGCTGACTCGG ATGTGCCCTCAACGGCAATCAAGTTGGAGCGCATCAGTCAGCTTCTTCAT TCGGCGAAGAACGTGTTGATTGAAGCACACGTAGTGACCGATTCATTGAG CACGAGATGTATGTACACACGCCACGCCGGTTGAGCGGTTCCAAAGTGAG TCTTGGACGCCGCTGGGGCAATACTTGGGCGAATGCCAACATGCGGTTGC AGCATGCGTCAACCTTGGCAACGAGGGTTCGCCCTTGGCATATATAGTCA CTCCTCCTATCTTGTATTCTGATCTGGTCCTCCGTTATCGACCAAGATAA TAGTGATCCCCTCGTCTGCGCGGTGGTTTCAGGTATCAGATACGTTGTTA GTGGCATCGCGTTTACCTTGCCCCTTTAACCTAAGGGGAGACAGAGTCAT GCACGTCAAGAACGGGTTGGTTCGGAACTGCGTTGTTGATGGCGTTCGAG GGTTAGGGTCGTTGGCGATGCCCTCGCAGCCGTGGTTGGCTCTAGAGGTT CGGTGGGTCCAACATTCCCGCCCCTGCTTCTACCCCTCTTTCGTGAAGGA AGTGTTCCGTGGCGCCGCTTGTCTCCCCCCCCCCCCCGCCCTACCTACCA ATTTTGGACATACCCCTTCCCCTCGAAGCCAATCTGCGATGCCCCCAAAT GCTCCCCACGTGCGGTTTTGGTTTTTCATGCAAATGAAAATGCAGCACTC CTTGCAACATGAAGTTCTCCGACTTGAACGGGCAGCTGGGCTTCTCCGGG GCAGCTGGGGCGTTCAGGGACAGGGACCTCGGAGAGAAGAGGTGACCTGC GTTGGGAACTTTCACTTTCCGCTACCCTCGATATTCTTGTGTTTACGCCT CAGAACCGGGGAGATATCTTGGCTTGTGCGCTAGGCTCAGCCCCTCCTGC GCCTCTGGACGTTGTTTAGGGTTTTTGTTCGAAAGGGTCTGTGGTCTGCC ATCAGCTCCGCTCGCATCGTCTTTAGAGGTTTTGTTGTTGTTGAAGGTGC GAGCTTCGTCGGGGCTGCACGGTATCACTCCAAGCCCTGTATCGCGTCCA TTGAATCACACGATGAACGCCTTCAGATACTGGAGATTCTATCGTTGTAA TTATTTCGTTTGCCCTCCGACAATTGCAGATAGATCCAACCAAATCAAAC CCAACACGTCTTCCCCTTGATGTTTAACCGTATTATACCAAGATGTATGT ATTGTAGAAATACCTACTAACATGAAATGTGCATAACATAACCTGAAACA AAATTTTCCGTTGTTATTGAAGGTGCGAGTTTCTCGGGACTGCATGGCGT CACTCCAAGCCCTGCGTTGCTTCCATTAAACCACATACATACATGATGAA CGTTCCGGGTGGGGGGGGGTGTTTTCGTCCCATTTATTTTGGCGACAGTC CCCTTTCCGATCAAGGCGAGACGTGTACTACACGTTGCGGTGTATTTAGA GTACTACACTTGTTCAGTGTATTTTTCTGTACAACTAGAACCAACCGGGG TCACACAGGAGGGGGTAAACACTGGGGCTTTTTTTCTTTTTCTTTTTCTG TTTCTTTTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTGGATTTTATC GCGAGAAGGGTGCAGCCATCCCTTTCCCTCGTCAACGTGCTAAGTCGAAG TTTGGTACTCACGAGCTTTTTCAGCTATGTTATCGCTTTCACCTGCAAAG TCGCAAAATAAACACCTTTGCTTGGAATTGAAGTCCAGACTTTGCTGCTA GTGGGTTCGAGGTTAAAGCACTAGTCCACCGGGGCGACCGGCTTCCGGGT ACAGTATTGAAATTCTATTCTCGTTTTGCTCTCCATCTTGTGCTCCTTAC CTTGTGTTGTGATGTGTTGTGATGTGATGTGATGTGATGTCAGGCCGAAC CTGAAGACGCAGGCGGAGGTGCTGGCCTTCCTCCGCAGAGTCGTGCTTCG ACACTCCCAGGGCATGAAGCTGGGCGCCAACAGCCTCCTCGGACTGCCCG GTATCACGCACAAGGTGGGCCCCTTTGTACCATTATTGTAAAAAGAAAAG AGGGCGACGCAGCGACCCGAGTAAGCTGTCGTTCCTTGTCAGATGTTTCC ACGTATGTATGTATCGTGTCTGAAAGTCGGTGGTTCTTGATAAGGATATA TATATATGAAATAAATACTACAGTACAGCTGGAGAGAAGAAGAATGCTAT TACATCAAGTTGGCGAGCGTGTATGTAATTAATGTGTTGACAGCAAATAA ACTTGGTTGAATCAACTGCAACACTCACTTGTCGGAAGGCCGCCCGAAGC AGTACCATATTATATAAAAAATGTGAACAAGGTATCTACGAACGAACATA CGTACGTACGTGCGTGTCGTCTGTTTAGGTGGAAGTGCTGCCGCTGCCAA AGAAGGAGCTGGACGCCTACCGCAACTTCGAGAAGGCCCTGCAGAAGGAG TACCTCGCGGTGCGGCACCGCCTTCTCAACTCGAGGGGGTCGCACACCAT GGCGGTCTTGACCCTCCTGACCAAGTTCCGGCGGGTATGTGGTGTGTGTG AATGAAGTATTATAGTTGTCACCCCAACTAACTGTGCTACATATACAAGA TTCGACTGAGTCCCCCTGGAGTTGATTTTGAGGAATTCTACGCGGACAGA GCTCGAGTCGATGTTCTGTGACCCATTAAATGTTTTATTTCGTTTGCCCT CCGACAATTAATTATTCATTGCAGATAGATGCACATAGACAATACCAAAA ACATCAATCGTAGCGTCCATCATGACCCATTAATATTCTTCGTGTTGGCG AGCCTTTTTTGAACAGCTTCCGCTCTTTGGAGGCCGGCTGTGTCTTGCGC CATGCTTTCTCCTTCTCCGGCTGAGGCCGTGGAGTTTCGTGTGAGACTTG AAGAAATCACCCCAATTACTCGGGGGGTTCTGCAGCCTTGCAGTGTATGC GCGGAGTAGGTGTTCCTGTTGTTGCGTAATATGAGTGTACCTCGTCACAA AGACGATGATGGCCTCCTCATCTAAAGTTTTGAGATATCGCTGGCTGTAC CTTGGCTGCCACGAACGTTTGCCGTCGTTCCGTTTTCATTGAAATCCAGC CTATCTATGCCTGGCTGTGGCTTTTCTCTCTCGATAACGAATTATTGAGT TCTCGATAATCACTTGCCGATCGATCTATTTAATTGGATTGTCCGCCGTT GTTTCCTTGGGATTTTGCTTCATCCAGGCGTGCTCCGGTGGGCAGCTCCT CATCGGCCAGCCAGCCCCGGTAGATATCCCGGGCACCAACGGAGACGGAC CCGCGCTGGGCGGGCAACAGGAGGAGGAGGAGAAAGAGGATTGGATGGAC GGGCTTGATGGTTCCGCGGAGGTGGCGGAAGAGGGGGACAGTGATGCCGA TGAGGGCGCGGCCGCGGAGTCGATGGACGCCTTCTGCTCCGTGTGCCACG AGCTCTTCGACTCGCCCGTCAAGACCCCTTGCGGCCACGTTTTCTGCCAG GTTTTGTCTTGTTGGCGTCGTCAAACTTTTTCATCTTTCTTCTGCAGGTA GGTAGGTGCGGTGTCAAGACAGCTAGTGAAACACGCTTTCTCGCACCTCA ACCATGGCGACCTCCAACCAACCACCGCGGGGAAGAAGTGCACACCTCTG CCCCTGCCACGCACGAAAACACACAAAAACAAAACACGCCCCCATCCACG TTCGCGTGCGTGCAGGAAAGAACCTCGGTCGTCCCAACGAAAACGCCTCT TGTACACTGTCAAAGTCCCTGCTCCCATGCTCACCGGGATGCTTTTGCTT TCCATCGGTGTAGTCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG CGTGCCGCCGAGTCCTCGTTCCCCGGTAGCGCCTCCCCAACCACGGAGGC CGTCCGACTGATTTCGCTTGAATGTGATGCGAGATACCGGTTTAAGTCAA CTACCTTAGTCTACACGTCTACCTCTCTTGAGCGATTTTCAGTCGGCGGT CGTGCATCCACACCAACCCCGGCGGTGTCGAGTCGGACGTCGCTGAAACG AACGAGAAGATGTAATTTCAGGCTGGCCACAACAGCAGCAAGAGCCGGCG ACTGGCGGTTTCAAATCAACTCGAAAACGAAACGGTACCTACTTCATACC CCGTAGTGCATTGCTCACTGACTTGAATTGCCATGGGTACTATTCTTCAG GTGTGCATCGCGGGAGCGTTGGCCAAGGGCGACGACG
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Coding sequence (CDS) from alignment at C-linearis_contig105:185612..190148-

>mRNA_C-linearis_contig105.947.1 ID=mRNA_C-linearis_contig105.947.1|Name=mRNA_C-linearis_contig105.947.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at C-linearis_contig105:185612..190148- (Chordaria linearis ClinC8C monoicous)
GTTCTGGACGAGAGCCACACAATCGCCAAGGGATCCCAAGCTACGACCGC
CGTCAAGCAGCTCGTGGCCAACCGCCGCTGGTGCATGACCGGGTTCTGGA
CGAGAGCCACACAATCGCCAAGGGATCCCAAGCTACGACCGCCGTCAAGC
AGCTCGTGGCCAACCGCCGCTGGTGCATGACCGGCACTCCTTGCAACATG
AAGTTCTCCGACTTGAACGGGCAGCTGGGCTTCTCCGGGGCAGCTGGGGC
GTTCAGGGACAGGGACCTCGGAGAGAAGAGCACTCCTTGCAACATGAAGT
TCTCCGACTTGAACGGGCAGCTGGGCTTCTCCGGGGCAGCTGGGGCGTTC
AGGGACAGGGACCTCGGAGAGAAGAGGCCGAACCTGAAGACGCAGGCGGA
GGTGCTGGCCTTCCTCCGCAGAGTCGTGCTTCGACACTCCCAGGGCATGA
AGCTGGGCGCCAACAGCCTCCTCGGACTGCCCGGTATCACGCACAAGGCC
GAACCTGAAGACGCAGGCGGAGGTGCTGGCCTTCCTCCGCAGAGTCGTGC
TTCGACACTCCCAGGGCATGAAGCTGGGCGCCAACAGCCTCCTCGGACTG
CCCGGTATCACGCACAAGGTGGAAGTGCTGCCGCTGCCAAAGAAGGAGCT
GGACGCCTACCGCAACTTCGAGAAGGCCCTGCAGAAGGAGTACCTCGCGG
TGCGGCACCGCCTTCTCAACTCGAGGGGGTCGCACACCATGGCGGTCTTG
ACCCTCCTGACCAAGTTCCGGCGGGTGGAAGTGCTGCCGCTGCCAAAGAA
GGAGCTGGACGCCTACCGCAACTTCGAGAAGGCCCTGCAGAAGGAGTACC
TCGCGGTGCGGCACCGCCTTCTCAACTCGAGGGGGTCGCACACCATGGCG
GTCTTGACCCTCCTGACCAAGTTCCGGCGGGCGTGCTCCGGTGGGCAGCT
CCTCATCGGCCAGCCAGCCCCGGTAGATATCCCGGGCACCAACGGAGACG
GACCCGCGCTGGGCGGGCAACAGGAGGAGGAGGAGAAAGAGGATTGGATG
GACGGGCTTGATGGTTCCGCGGAGGTGGCGGAAGAGGGGGACAGTGATGC
CGATGAGGGCGCGGCCGCGGAGTCGATGGACGCCTTCTGCTCCGTGTGCC
ACGAGCTCTTCGACTCGCCCGTCAAGACCCCTTGCGGCCACGTTTTCTGC
CAGGCGTGCTCCGGTGGGCAGCTCCTCATCGGCCAGCCAGCCCCGGTAGA
TATCCCGGGCACCAACGGAGACGGACCCGCGCTGGGCGGGCAACAGGAGG
AGGAGGAGAAAGAGGATTGGATGGACGGGCTTGATGGTTCCGCGGAGGTG
GCGGAAGAGGGGGACAGTGATGCCGATGAGGGCGCGGCCGCGGAGTCGAT
GGACGCCTTCTGCTCCGTGTGCCACGAGCTCTTCGACTCGCCCGTCAAGA
CCCCTTGCGGCCACGTTTTCTGCCAGGTGTGCATCGCGGGAGCGTTGGCC
AAGGGCGACGACGTGTGCATCGCGGGAGCGTTGGCCAAGGGCGACGAC
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