prot_C-linearis_contig105.947.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig105.947.1
Unique Nameprot_C-linearis_contig105.947.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length258
Homology
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 3.570e-78
Identity = 140/258 (54.26%), Postives = 168/258 (65.12%), Query Frame = 0
Query:    1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGDD 258
            VLDESHTIA    AT  V+ +V+NRRWCMTGTP   +FSD NGQL F GA GAFR  DLG+K PN +TQ E +AFLRRV+ RHSQGMKLG  S+LGLP ITHKVEVL LP KE  AY +FEK LQ +Y+ VRHRL   +GSHTM VLTLL+KFR+ACSGGQLL+G  A V   G +G+GP                                       S+DAFC +C+++ +SPV+T CGH+FCQ CI+  L K +D
Sbjct:  836 VLDESHTIATAKHATNEVRDIVSNRRWCMTGTPYISRFSDANGQLSFVGAGGAFRGSDLGDKGPNRETQVETVAFLRRVLFRHSQGMKLGGKSILGLPSITHKVEVLALPTKERKAYVDFEKGLQNDYIMVRHRLRTQKGSHTMEVLTLLSKFRQACSGGQLLVGDSATV---GYDGEGPTPA------------------------------------SVDAFCPICNDIIESPVRTKCGHIFCQACISSVLTKKED 1054          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: D7G0T2_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T2_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 2.180e-74
Identity = 136/258 (52.71%), Postives = 164/258 (63.57%), Query Frame = 0
Query:    1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQ-VCIAGALAKGD 257
            VLDESHTIA    AT  V+ +++NRRWCMTGTP   +FSD NGQL F GA  AFR  DLG+K PN +TQ E +AFLRRV+LRHSQGMKLG  S+LGLP ITHKVE L LP KE  AY +FEK LQ +Y+ VRHRL   +GSHTM VLTLL+KFR+ACSGGQLL+G  A V      GDG                                  +G+   S+DAFC +C+++ +SPV+T CGH FCQ VC+   L   +
Sbjct:  775 VLDESHTIATAKHATNEVRDIISNRRWCMTGTPYISRFSDANGQLSFVGAGSAFRGSDLGDKGPNRETQVETVAFLRRVLLRHSQGMKLGGKSILGLPSITHKVEALALPTKERKAYVDFEKGLQNDYIKVRHRLRTQKGSHTMEVLTLLSKFRQACSGGQLLVGDSATV-----GGDG----------------------------------DGSTPASVDAFCPICNDIIESPVRTKCGHTFCQLVCVMVVLVSSE 993          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 1.040e-71
Identity = 136/259 (52.51%), Postives = 165/259 (63.71%), Query Frame = 0
Query:    1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRD-RDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGDD 258
            VLDESHTIA  +  TT VK LV+NRRWCMTGTP   +FSD+NGQL F GA GAFR   DLG+K P  +TQ E +AFLRRV+LRHSQGMKLG +S+LGLP IT+KVEVL L  KE  AY +FE+ +Q +Y+ VRHRL   +GSHTM VLTLL+KFR+ACSGGQL++G  A     G  G  PA                                       +DAFCS+C+E+ ++PV+T CGH FCQ CI+  L K  D
Sbjct:  805 VLDESHTIASSNSTTTHVKTLVSNRRWCMTGTPYISRFSDVNGQLAFLGAEGAFRGGSDLGDKAPRRETQGETVAFLRRVLLRHSQGMKLGGHSILGLPTITNKVEVLTLSSKERKAYVDFEQGVQNDYIKVRHRLRTQKGSHTMEVLTLLSKFRQACSGGQLVVGASAA----GGGGSTPAT--------------------------------------LDAFCSMCNEILEAPVRTRCGHTFCQACISSVLTKSKD 1021          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: D7G0T8_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T8_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 6.790e-50
Identity = 93/126 (73.81%), Postives = 104/126 (82.54%), Query Frame = 0
Query:    1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQK 126
            VLDESH++  GS ++ AV++LVANRRWCMTGTP   KFSDLN QL F G AG+FRDRDLG+KRPN  TQ EV AFLRRVVLRHSQGMKLGANSLLGLP ITHKVEVL  P KEL+AY +FE  +QK
Sbjct:  750 VLDESHSLNHGSGSSNAVRELVANRRWCMTGTPFTSKFSDLNRQLSFVGVAGSFRDRDLGDKRPNTDTQVEVTAFLRRVVLRHSQGMKLGANSLLGLPTITHKVEVLTPPPKELEAYHDFENTIQK 875          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A835YWG4_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.590e-34
Identity = 88/269 (32.71%), Postives = 129/269 (47.96%), Query Frame = 0
Query:    1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLK-----------TQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGDD 258
            VLDESHTI   ++ + AV  +++NRRW ++GTP N    DL GQL         ++ D+G  R  L            +  + L FLR +++RH+Q   L    +LGLP I  +  ++     E  AY   EK LQ +Y +VR+ L +++GSH+M VLTL++++R+ACSGG + I   A  +     G G  +                                      MDA C +C+EL D+P  T C HVFC +CI   + K  D
Sbjct: 1038 VLDESHTIKTTNRLSAAVATIISNRRWLVSGTPANSNLGDLTGQL---------KNLDIGNLRSALAPLRYADSSNEISVRQALPFLRSIMMRHTQAQTLNGRHILGLPPINKEAVLVKWAPHERTAYVKLEKELQSQYKSVRYLLRSAKGSHSMKVLTLMSQYRQACSGGAI-INSAALAEAAAAGGQGATV--------------------------------------MDALCPICNELLDTPAITTCNHVFCHLCITAHVTKKAD 1258          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A7S2JRT6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRT6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.950e-15
Identity = 76/273 (27.84%), Postives = 110/273 (40.29%), Query Frame = 0
Query:    1 VLDESHTIAKG-SQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDL--------GEKRPN-LKTQAEVLAFLRRVVLRHSQGMK--LGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVR----HRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGD 257
            + DESH +    ++ T AVK+LVA  +WC+TGTP N   SDL  Q+ F G     R  D         G+  P   +     L  +R +++RHS           L+ LP  T +   + L K+E  AY   EK+  + Y  +R     R+ N +    +A+L  +   R AC+GG        PV    T                           + A+    D D   A       CS+C   FD    T CGH++C+ CI G +   D
Sbjct:  233 ICDESHCLRSSQTKQTQAVKRLVAENKWCVTGTPMNTNLSDLRSQMEFIGIENLNRMFDCFKGLGKTGGKNMPRCFRALERFLLVMRSMMIRHSMNQTNISSGRELMELPKKTERTIKITLTKEERKAYNTIEKSAMEFYRRLRMQEDERVFNRK---YLAILQKMIPMRLACAGG--------PVSQNATQ--------------------------KCADIDKGDKDRFHAKPDEHTECSICLNDFDDARATACGHIYCKECIEGVITAMD 468          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A368RZF4_SETIT (Uncharacterized protein n=4 Tax=Setaria TaxID=4554 RepID=A0A368RZF4_SETIT)

HSP 1 Score: 67.4 bits (163), Expect = 4.440e-9
Identity = 68/263 (25.86%), Postives = 114/263 (43.35%), Query Frame = 0
Query:    1 VLDESHTIAK-GSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFS-----GAAGAFRDRDLGE-KRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAP-VDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAK 255
            VLDE+ TI    +Q + A   L+A RRWC++GTP   K  DL     F          +F+D+   E  +  ++   ++ A LR ++LR ++   +    +L LP  T ++  +   ++E   Y   E+  ++++ A  +    +   +   +L LL + R+AC    LL GQ +  VD          +  Q  +E   D ++ L                    E   A CS+C +  +  V T CGHVFC  C+  +L  
Sbjct:  556 VLDEAQTIKNYRTQVSRACCGLMAERRWCLSGTPIQNKIDDLYSYFCFLKYEPYSKLSSFKDKIKYEITKDPVRGYKKLQAILRIILLRRTKETLIDGEPILKLPPKTIQLSKIDFTQEERAFYLTLEEGSRQKFKA--YDAAGTINENYANILVLLLRLRQACDHPLLLKGQESDLVDTKSIE-----MAKQLPKETVTDLLEKL--------------------ERGPAICSICSDPPEDAVVTTCGHVFCYQCVHESLTS 791          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A7S1DCX5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCX5_CYCTE)

HSP 1 Score: 63.9 bits (154), Expect = 3.460e-8
Identity = 53/192 (27.60%), Postives = 86/192 (44.79%), Query Frame = 0
Query:    1 VLDESHTIAKGSQA-TTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGA---------------------------AGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMK-LGANS-LLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQL 162
            + DESHT+  G+   + AV  LVA+ +WC+TGTP N   +DL  QL F G                              AF+++   E R         L F+R V++RHS   + +G ++ L+ LP +  +   +    ++   Y   E A ++ YL ++ +  N  G + + +   L   R ACSGG +
Sbjct:  113 ICDESHTMRTGATTQSAAVMGLVADHKWCVTGTPINTAITDLTSQLRFVGIENLSEYSTVFRKTIKVHLDSKRETSRRGNAFKNKVFEESR----RCGPFLFFMRNVMIRHSMKQQYIGTSTTLMSLPPMRERHIDVEFSAEDATEYAPLEVAARQFYLQIKEKGANFVGRNYLKLSQCLLPLRIACSGGHV 300          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: F7VQG7_SORMK (WGS project CABT00000000 data, contig 2.4 n=1 Tax=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) TaxID=771870 RepID=F7VQG7_SORMK)

HSP 1 Score: 60.8 bits (146), Expect = 7.020e-7
Identity = 46/170 (27.06%), Postives = 77/170 (45.29%), Query Frame = 0
Query:    1 VLDESHTIAKG-SQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGF------------SGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRAC 157
            +LDE+  +    + ++ AV+Q+ AN RWC+TGTP     S+L+  L F              A G+   R  G      K   ++ A L+ ++LR  +   +    +L LP     +E +   + E + Y N +   Q  Y   R+   N+ G +   +L LL + R+AC
Sbjct:  696 ILDEAQCVKNAKTMSSKAVRQVQANHRWCLTGTPMMNSVSELSALLRFLQIKPFCEERKFKEAFGSLDHRHKGRDFEKSKAMKQLQALLKAIMLRRMKTTVIDGKPILNLPPKVEHIEHVEFSEGEKEFYTNLQDKSQVIY--GRYVRNNTVGKNYSNILVLLLRLRQAC 863          
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: V4UE68_CITCL (Uncharacterized protein n=4 Tax=Citrus TaxID=2706 RepID=V4UE68_CITCL)

HSP 1 Score: 55.8 bits (133), Expect = 3.130e-5
Identity = 70/274 (25.55%), Postives = 116/274 (42.34%), Query Frame = 0
Query:    1 VLDESHTIAKG-SQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAA--GAF--------RDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMK-LGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEY--LAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTN--------GDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGA 252
            VLDE+HTI    SQ + A   LVA+ RWC+TGTP      D+   L F      G +        +  + G++R  LK    V + L+ ++LR ++         +L LP    +V    L + E D Y    K  + ++     + R+L++  S    +L LL + R+ C    L++ +    D    N        G   AL G+ ++     ++  +    +  E+G+               C +C E F+  V TPC H  C+ C+ G+
Sbjct:  559 VLDEAHTIKSSKSQVSIAAAALVADYRWCLTGTPIQNNLEDIYSLLRFLRVEPWGNWAWWNKLIQKPYEEGDER-GLKL---VQSILKPIMLRRTKSSTDREGRPILVLPPADIQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYAS----ILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGE---------------CPICLEAFEDAVLTPCAHRLCRECLLGS 809          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KW09_9PHAE3.570e-7854.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T2_ECTSI2.180e-7452.71Helicase ATP-binding domain-containing protein n=1... [more]
D7G0S9_ECTSI1.040e-7152.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T8_ECTSI6.790e-5073.81Helicase ATP-binding domain-containing protein n=1... [more]
A0A835YWG4_9STRA1.590e-3432.71SNF2 family N-terminal domain-containing protein n... [more]
A0A7S2JRT6_9STRA9.950e-1527.84Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A368RZF4_SETIT4.440e-925.86Uncharacterized protein n=4 Tax=Setaria TaxID=4554... [more]
A0A7S1DCX5_CYCTE3.460e-827.60Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
F7VQG7_SORMK7.020e-727.06WGS project CABT00000000 data, contig 2.4 n=1 Tax=... [more]
V4UE68_CITCL3.130e-525.55Uncharacterized protein n=4 Tax=Citrus TaxID=2706 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 225..249
e-value: 1.5E-9
score: 37.7
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 1..89
e-value: 1.4E-7
score: 32.6
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 1..161
e-value: 1.9E-11
score: 43.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 183..258
e-value: 1.8E-11
score: 45.6
NoneNo IPR availablePANTHERPTHR45626FAMILY NOT NAMEDcoord: 1..250
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 222..252
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 240..249
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 225..249
score: 9.317
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:185613..190148 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.947.1mRNA_C-linearis_contig105.947.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig105 185612..190148 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig105.947.1 ID=prot_C-linearis_contig105.947.1|Name=mRNA_C-linearis_contig105.947.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=258bp
VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGA
AGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGI
THKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLL
TKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDG
SAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIA
GALAKGDD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027370Znf-RING_LisH
IPR038718SNF2-like_sf
IPR000330SNF2_N
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001841Znf_RING
IPR027417P-loop_NTPase