mRNA_C-linearis_contig105.942.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig105.942.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE) HSP 1 Score: 156 bits (395), Expect = 4.050e-38 Identity = 151/339 (44.54%), Postives = 182/339 (53.69%), Query Frame = 1
Query: 289 RGRRRSSAEDMDMDTDDTTKMEIETESWGVGERPLKRRGRENAPA---AVTPSPKAMHQESFETSSPGHGGEIDEA-----------------------ASKGDDYSPAAXXXXXXXXXXXXXXKTVAEKLELVKIEEAKLLRQFEETHKRSAQASNTGCNEEKAKREEMAEFQRAGEAALRTIQEEKEEALRRISEGRKKKAAERQKLVQRRLKEFEAEEEASRIEAREKDARLEAEKERLAKTTRGGAARNGRGKAADAPNGNXXXTGNREWTADSWTLSGANSAELKRVAAQNARRAGQGAAAK------KPAFVKNEETCEKAAEVAKLLAGTAV 1209
RGRRRS+ E + D +MEIET+S V ERP KRRG+ PA AVT SPKAM ++SF S S GD TVAE+LELVK EEA+LLR+FEETHKR AQ EE+AKR+EMA FQRAGEAALR +Q+EKEEAL+RIS RK KAAER++L+ +R KEFEAEE RIEARE+DARLEAEKE+LAK + A XXX EW +D W L+G N G G +AK P +V++++ KAA VA+LLAG V
Sbjct: 118 RGRRRSAPEKLG----DIHEMEIETDSSEVCERPHKRRGKAGTPANPAAVTLSPKAMRRDSFAASPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSDGD--------AGLGVTSPPPVPTTVAERLELVKGEEAELLREFEETHKRIAQ-------EEEAKRQEMARFQRAGEAALRAMQKEKEEALQRISAERKCKAAERKELLHQRFKEFEAEETELRIEARERDARLEAEKEQLAKDS-SVAXXXXXXXXXXXXXXXXXXXXXPEWASDKWILAGMNGG-------------GGGGSAKLPVAERPPVYVRDQKADAKAAAVARLLAGGVV 423 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.942.1 >prot_C-linearis_contig105.942.1 ID=prot_C-linearis_contig105.942.1|Name=mRNA_C-linearis_contig105.942.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=485bp VGDGRNALATGRKGGRGGAAAAAAAAAAAADDAPEGNAQGTASPPKPSHKback to top mRNA from alignment at C-linearis_contig105:153940..157926- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.942.1 ID=mRNA_C-linearis_contig105.942.1|Name=mRNA_C-linearis_contig105.942.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3987bp|location=Sequence derived from alignment at C-linearis_contig105:153940..157926- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:153940..157926- >mRNA_C-linearis_contig105.942.1 ID=mRNA_C-linearis_contig105.942.1|Name=mRNA_C-linearis_contig105.942.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2910bp|location=Sequence derived from alignment at C-linearis_contig105:153940..157926- (Chordaria linearis ClinC8C monoicous)back to top |