mRNA_C-linearis_contig105.940.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.940.1
Unique NamemRNA_C-linearis_contig105.940.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5KGJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ7_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.170e-44
Identity = 68/78 (87.18%), Postives = 70/78 (89.74%), Query Frame = -2
Query:    6 MGMAPYAGMLSKFALRNITISTQYVSMRLRFAVRRLPQPLKSRSICAAEAWFPNTCWATGARVGKWFLPLVPHQPSTS 239
            MGM PYAGMLSKFAL NITIS  YVS+RLRF V R+PQPLKSRSICAAEAWFPNTCWATGARVG WFLPLV HQPSTS
Sbjct:    1 MGMTPYAGMLSKFALGNITISNPYVSVRLRFEVMRVPQPLKSRSICAAEAWFPNTCWATGARVGNWFLPLVAHQPSTS 78          
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 5.620e-42
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    4 KDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279
            +++L WW   G+  FP LAPVAQQVFGNQA AAQ+ERDFSGC NLLT NRSRMDTYWVEMVMFL ANFE IP +  IPMIA K++ +CLP R
Sbjct:   28 REILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPR 119          
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.320e-38
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    4 KDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279
            ++VL WW   G+  FP LAPVAQQV GNQA AAQ+ERDFS C NLLT NRSR+DTYWVEMVMFL  N++ IPA+  IPMIA K++R+CLP R
Sbjct:  103 REVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPR 194          
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 6.230e-38
Identity = 64/92 (69.57%), Postives = 72/92 (78.26%), Query Frame = 1
Query:    4 KDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279
            ++VL WW   GKN FP LAPVAQQVFGNQA+ +Q+ERDFSG G LL  NRSRMDTYWVE+VMFL ANF  IP    IPM+A KN+RSCLP R
Sbjct:  190 REVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPAR 281          
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 6.470e-36
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    4 KDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279
            ++VL WW   G+  FP LAPVAQQV GNQA AAQ+ERDFS C NLLT NRSR+DTYWVEMVMFL  N++ IPA+  IPMIA K++R+CLP R
Sbjct:  501 REVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPR 592          
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.790e-34
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   46 FPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279
            FP LAPVAQQV GNQA AAQ+ERDFS C NLLT NRSR+DTYWVEMVMFL  N++ IPA+  IPMIA K++R+CLP R
Sbjct:    2 FPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPR 79          
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.980e-30
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    1 PKDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279
            P +VL +W T G++ FP L  VAQQ FG+Q SAA +ERDFSGCG  L  NRSR++ YWVEMVMFL ANF+ IP Y  IP I  K++R CLP +
Sbjct:  729 PTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRKCLPAK 821          
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.590e-30
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    7 DVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279
            +VL +WG  GK+ FP+L  VAQQ FGNQASAA +ERDFSGCG  +  NRSR+D YWVEMVMFLKANF S      IP I PK++R CLP +
Sbjct:  389 EVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNSSRRIN-IPQIDPKDIRKCLPAK 478          
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.930e-29
Identity = 56/93 (60.22%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 PKDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279
            P DVL +W   GK  FP+L  VAQQ FG+QASAAQIERDFS CG   T NRSR + YW+EMVM LK N+E IP Y  IP I  K++R CLP +
Sbjct:  489 PSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIRKCLPAK 581          
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 6.040e-28
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    1 PKDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279
            P+DVL +W   G++ FP L  VAQQ FG+QA AAQIERDFS  G L  +NR+R+D YWVEMV+FLKANF+ IP Y  IP +  K++R CLP +
Sbjct:  384 PRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRECLPAK 476          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGJ7_9PHAE3.170e-4487.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSA7_9PHAE5.620e-4270.65Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE1.320e-3867.39Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE6.230e-3869.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ46_9PHAE6.470e-3667.39Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KP16_9PHAE2.790e-3473.08Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJJ9_9PHAE2.980e-3059.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE4.590e-3062.64Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE3.930e-2960.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE6.040e-2858.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:135879..136157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue4.9e-07
Seed eggNOG ortholog588596.U9USH6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927393.6684213-CDS-C-linearis_contig105:135878..1361571622927393.6684213-CDS-C-linearis_contig105:135878..136157Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 135879..136157 -
1690879674.0865273-CDS-C-linearis_contig105:135878..1361571690879674.0865273-CDS-C-linearis_contig105:135878..136157Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 135879..136157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.940.1prot_C-linearis_contig105.940.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 135879..136157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.940.1

>prot_C-linearis_contig105.940.1 ID=prot_C-linearis_contig105.940.1|Name=mRNA_C-linearis_contig105.940.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=93bp
PKDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTAN
RSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR
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mRNA from alignment at C-linearis_contig105:135879..136157-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.940.1 ID=mRNA_C-linearis_contig105.940.1|Name=mRNA_C-linearis_contig105.940.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at C-linearis_contig105:135879..136157- (Chordaria linearis ClinC8C monoicous)
CCGAAGGATGTGCTCGGTTGGTGGGGTACCAAGGGCAAGAACCACTTCCC CACCCTGGCGCCTGTCGCCCAGCAGGTGTTCGGGAACCAGGCCTCTGCTG CGCAAATCGAGCGCGATTTCAGTGGTTGCGGTAACCTCCTGACCGCGAAT CGGAGCCGCATGGACACGTACTGGGTGGAGATGGTGATGTTCCTCAAAGC AAACTTCGAAAGCATCCCCGCGTACGGTGCCATCCCCATGATCGCTCCGA AGAATGTCCGCTCGTGTCTTCCCGGGCGT
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Coding sequence (CDS) from alignment at C-linearis_contig105:135879..136157-

>mRNA_C-linearis_contig105.940.1 ID=mRNA_C-linearis_contig105.940.1|Name=mRNA_C-linearis_contig105.940.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at C-linearis_contig105:135879..136157- (Chordaria linearis ClinC8C monoicous)
CCGAAGGATGTGCTCGGTTGGTGGGGTACCAAGGGCAAGAACCACTTCCC
CACCCTGGCGCCTGTCGCCCAGCAGGTGTTCGGGAACCAGGCCTCTGCTG
CGCAAATCGAGCGCGATTTCAGTGGTTGCGGTAACCTCCTGACCGCGAAT
CGGAGCCGCATGGACACGTACTGGGTGGAGATGGTGATGTTCCTCAAAGC
AAACTTCGAAAGCATCCCCGCGTACGGTGCCATCCCCATGATCGCTCCGA
AGAATGTCCGCTCGTGTCTTCCCGGGCGTCCGAAGGATGTGCTCGGTTGG
TGGGGTACCAAGGGCAAGAACCACTTCCCCACCCTGGCGCCTGTCGCCCA
GCAGGTGTTCGGGAACCAGGCCTCTGCTGCGCAAATCGAGCGCGATTTCA
GTGGTTGCGGTAACCTCCTGACCGCGAATCGGAGCCGCATGGACACGTAC
TGGGTGGAGATGGTGATGTTCCTCAAAGCAAACTTCGAAAGCATCCCCGC
GTACGGTGCCATCCCCATGATCGCTCCGAAGAATGTCCGCTCGTGTCTTC
CCGGGCGT
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