prot_C-linearis_contig105.928.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig105.928.1
Unique Nameprot_C-linearis_contig105.928.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length180
Homology
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BLAST of mRNA_C-linearis_contig105.928.1 vs. uniprot
Match: D7FXV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV5_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 1.660e-70
Identity = 106/142 (74.65%), Postives = 122/142 (85.92%), Query Frame = 0 
Query:    1 MKTRYSSLVVLLVASWIGQGHSWGGGRRAEDRAHVAAWEAFSADLSRGDCTMDSLSEQASVTLPIGQTVSKDEYRLACESSMGDTTVGNISFHDEKVVTIDRSNFSVEVVVTTEAVSLKGGVPQEVTYPAAFFMSIDARTNK 142
            MKTR+S+LV+ +VASW+G   SWGGGRRAED+ H  AWEAFSAD+ RGDCTMDSLSEQASVTLPIGQTV+KDEYRLACE+SMGDTTVG  S HD K+V+IDR NFSVE +VT +A SLK G  Q+V+YPAAFFM+ID RTNK
Sbjct:    1 MKTRHSALVIFIVASWVGLAQSWGGGRRAEDKTHTLAWEAFSADMGRGDCTMDSLSEQASVTLPIGQTVTKDEYRLACENSMGDTTVGETSLHDGKLVSIDRVNFSVEAMVTAKATSLKTGFQQDVSYPAAFFMTIDLRTNK 142
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.928.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXV5_ECTSI1.660e-7074.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..179
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.713

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:34574..43390 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.928.1mRNA_C-linearis_contig105.928.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig105 34538..47756 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig105.928.1 ID=prot_C-linearis_contig105.928.1|Name=mRNA_C-linearis_contig105.928.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=180bp
MKTRYSSLVVLLVASWIGQGHSWGGGRRAEDRAHVAAWEAFSADLSRGDC
TMDSLSEQASVTLPIGQTVSKDEYRLACESSMGDTTVGNISFHDEKVVTI
DRSNFSVEVVVTTEAVSLKGGVPQEVTYPAAFFMSIDARTNKKYAYTRRT
SRCWLREDIPWYRRAASNPSSAQHDRSSC*
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