mRNA_C-linearis_contig105.925.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.925.1
Unique NamemRNA_C-linearis_contig105.925.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:19647..24369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_001290.1
Exons3
Model size2477
Cds size966
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.925.1prot_C-linearis_contig105.925.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 21849..23280 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927391.9724176-UTR-C-linearis_contig105:19646..200481622927391.9724176-UTR-C-linearis_contig105:19646..20048Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 19647..20048 +
1690879672.9073622-UTR-C-linearis_contig105:19646..200481690879672.9073622-UTR-C-linearis_contig105:19646..20048Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 19647..20048 +
1622927391.9894388-UTR-C-linearis_contig105:21828..218481622927391.9894388-UTR-C-linearis_contig105:21828..21848Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 21829..21848 +
1690879672.9175699-UTR-C-linearis_contig105:21828..218481690879672.9175699-UTR-C-linearis_contig105:21828..21848Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 21829..21848 +
1622927392.0332284-UTR-C-linearis_contig105:23280..243691622927392.0332284-UTR-C-linearis_contig105:23280..24369Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 23281..24369 +
1690879672.9504092-UTR-C-linearis_contig105:23280..243691690879672.9504092-UTR-C-linearis_contig105:23280..24369Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 23281..24369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927392.0084436-CDS-C-linearis_contig105:21848..226161622927392.0084436-CDS-C-linearis_contig105:21848..22616Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 21849..22616 +
1690879672.9332943-CDS-C-linearis_contig105:21848..226161690879672.9332943-CDS-C-linearis_contig105:21848..22616Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 21849..22616 +
1622927392.01916-CDS-C-linearis_contig105:23082..232801622927392.01916-CDS-C-linearis_contig105:23082..23280Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 23083..23280 +
1690879672.9416823-CDS-C-linearis_contig105:23082..232801690879672.9416823-CDS-C-linearis_contig105:23082..23280Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 23083..23280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.925.1

>prot_C-linearis_contig105.925.1 ID=prot_C-linearis_contig105.925.1|Name=mRNA_C-linearis_contig105.925.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=322bp
MLSEKDGVLSSDKPPHFAEYGVVVADSTDTTNDDDSTTTTSKKDDTSSSN
NNNRANNNGGGGGGGHKMPHGGSGNPSSPAPSANPGALGGESQSRFSKSW
SKARMPGCPLDPTVHPSPSLKVGDVLRGKLLSENGQSSISASRDDGSILL
TRVTGEPPLDLKGKQTGPIPTTVTTLIRSDLGKVNRVYQLRADLDEEEEE
VKKLMRDGQPPKKGVKKAVLGIFPWGEAGWLYRREMAHTKAHRGEVEVII
TKRGVVESFMDGKKVLCEGGPSFCGSRRKDPSNEMRPTSNGVEVTRRLAR
SWSLRMRGQEKLEIWSGRLPA*
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mRNA from alignment at C-linearis_contig105:19647..24369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.925.1 ID=mRNA_C-linearis_contig105.925.1|Name=mRNA_C-linearis_contig105.925.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4723bp|location=Sequence derived from alignment at C-linearis_contig105:19647..24369+ (Chordaria linearis ClinC8C monoicous)
GCAACAGGAGTTTGTTTGAGGTGTGCAGGGTATATAGTATCATCATATAC
TTCGTATATATATGCACATCATTGCATACAATCTTATTTCTTCTTTTTGC
CTCGAGAAACGCACAGAAGAACGACAAGAAGAGCTCGGGGACACAACCGA
AAGTACGGGCCATCCTACACACGCGCACACAACAAAAAGATGAAACCCCG
GGGATGGCCCACTTTCGTCCCCTTGCGGAAGCGGTAATTACCGGTAGGTA
ACGTGGAAAATCCGGGTAAATAACTCCCATCCTTTCAAAAAACTATGCAC
CCCACTTTCTTCTACCGCAGAGTTTGGATCGCTACTACAGCAGAAAAGCT
GGTTTCGACAGCAGTGATTGTCTCGAAAAACTTCTCGACGTGCAGCGCGT
GGGTGAGTTGGATGTGCATCGCGAGGCCAGTGTGGGACCAGCCTAAGCGC
CTCGCTTCTCTCTATCTCTCGCTCGCAACCTATCTGATGTTGTCGACGGA
AGAACCGCGTCAGTCACAACTTGTTTGAATATTATATATGTCGGCACGTA
CGCGTCCAGTTCCTTTGGTGATGCTTGAAAGAAGAGGTGAACGAATACGA
AAGGCTCAAAGACACTACGTGCTACGTACGTGCGTGACGAGCGGTATCAC
GATGTGTTCACCCCGTAGCAGCTTGGTGTACCGAATACTTGCGCATGTGA
TGGCTCAAGGCAGCCGTATATCGTATATCATCGTAAACGTTTCCGGCTTG
TTGAGTTTTTGGCTTTTTCCGGGGTTGGTCGCGGGGGTGAACGAAATGTT
AATGTTCCGAAAGTTAAAGATAGATCTCAGATCTCAGATCGATACGTGGG
GGCCGAGCCTGGCTGCAAGATGTTCACGTCCCTGCCTCATGGCGTGCTAA
ATATGCCTGGTCTTCAACCACCGGCTAGCGATGTCTGGTCTTCAACCACC
GGCTAGCGAAGTCTTGTTCTAGCTGGCGTTGTTGATACGGCTGTTGTTGA
TTCGTTGCCTTCATCATCGGAGTCTGTCCGCACGTACGTATCGGAGTCGT
TCGCACTCAGGGTGTGCGGGAAAAATAGGGTTCCAAAAGGGCATGTACGT
AGTACGCGGTTCAACTTTTGCACCTCGGTGTAGGGAGACTCCGATACCTT
CGATGAGGTTGGGCGATATCACGAGTGGTACGGTATCCAATACTTCGTAC
TACTTCTACTGCTGTGGAGTCCTTCTATGCTTTGGCACCGTGAGGGTGCT
CATCATGTGCAAGTAAGTGAAGTCGCTACAGAACGCGCGATCTACACTAC
TAGCACTCCGGAATAGTAATGTAAGGAACTCTTCGTTTGCGCGAGGCTCG
TTTCTTCTTTTTCTGTGGGGCAGCCAACTTGTCTTATATACGGGTAGGTT
TTAGCTAGAGGTTCTTGTCTGTGCATCTCAAGTCGTGAAGTGCAAGTTCT
TATATTTTGTTTTTTTTCAGCCTCAATTTCTCAAGTGCCAGTTTCTAAAG
CGGCGGCGTCTTGGCGCGGGGTTTGCGTTCAAAGCACCCCGCTCCGCCCA
AGCCGCTTTTGTTTTATTCAGAACCGCAAGTATCGGAGTCATTACACAAG
GAAGGGTGTGCGTTATGCTGTTTAGACCGAGTTAATTTTAGTTCACTTTC
AGCACAGGTATCGGAGTCTCTCCGCACAACATGTCGAAGTCTTAGTCTTC
ACACCCTGTCTGTGCGATAAAAACCTGAATAGAAGCACGAAAACAATTAA
AAAAGACGACCGCACAGCAGCAGTGAAGCAGCAGTGAAGTGAACACAGAG
GTGAAGTGAAGACTCCGGTGATTGCGGTAATCGAGATTGCTCCATCCCAA
AATCATTAGCATGAATCACGGCCCGTGGTGGCATAGACTAAGTGCTAGAG
CCACCAGAAGATCTAAAAGACACACACAGCAGGGCATAGGTACACACGAC
GACCGGAGTGGTACGCCTACAACCACAGGACTCCCTAAAACGAGTTTGTA
TGTGTCCAAACGTGTACGTACAAGGAACGCAAAGCAGCAGCCTTGACAAC
ACAACGACACCACCCCCACCATCACCCACCCAACTTAAGCTGACCCCTAC
AGTATGTGCTTTGTGCTGTGTGCCGCTGCCACCGCTGCTGTGCTACTGTA
CCGCCGCCGAATAAACTACCTTGCGGCAACAGGTGGACGAGCACGGTGTG
GCATGCTGTCGGAGAAAGATGGCGTGCTTTCCTCGGACAAGCCGCCGCAC
TTCGCGGAGTATGGGGTGGTGGTCGCAGACTCCACCGACACCACTAACGA
TGACGACAGCACCACCACCACTAGCAAGAAGGACGACACCAGCAGCAGCA
ACAACAACAACCGCGCCAACAACAACGGAGGCGGCGGGGGCGGCGGCCAC
AAAATGCCTCACGGCGGCAGCGGGAATCCATCCTCCCCAGCTCCGAGCGC
AAACCCGGGGGCTTTAGGAGGAGAGAGTCAGTCCCGCTTCTCTAAATCGT
GGTCCAAGGCCAGGATGCCGGGCTGCCCCCTTGACCCTACGGTTCACCCA
TCCCCGTCTCTCAAGGTCGGGGACGTGCTGCGCGGGAAGCTGCTCAGCGA
GAACGGGCAATCGAGCATAAGCGCGAGCCGCGATGACGGGTCTATTCTCT
TGACCCGGGTGACTGGAGAGCCGCCCCTCGACCTTAAAGGCAAGCAGACT
GGTCCCATCCCCACAACTGTGACGACCTTGATCAGGTCCGACCTCGGCAA
GGTTAACAGGGTTTACCAGCTGCGCGCGGACCTCGACGAGGAGGAGGAGG
AGGTCAAGAAGCTGATGAGGGACGGCCAGCCTCCCAAGAAGGGGGTGAAG
AAGGCCGTTCTGGGCATTTTCCCGTGGGGCGAGGCCGGGTGGCTGTACCG
CCGGGAGATGGCACACACCAAGGCTCACAGAGGGGAAGTGGAAGTGATTA
TCACCAAGCGGGGTGTGGTGGTGAGTGCGGCTGCCGCCGGCAAAGAGTCC
GGCAAAGAGTCGTGGGGGTGGTATCATACTCAACAGGCTCTAGATACCCG
TTCGTAGGCACGGTACATTATACCTCGCCGTTCGATATTGCGCCCCGTTC
CCATGCTGGTGGTTGGTTTCCCCCTCCAACAAGCCCTAAGGTGAAAGCCC
TAAGGTGAAAGCCCTAAGGTGAGGTTGGGCGGAGCACTAAATTTTGCGAA
GCGCTACAGAGGTGGGCAATCGTGCCGCGTTGACGATCAAAGTGGCTTCT
TCTCTCTTACAGTTCCCAGAAATGGGGGACAATGTATGTAACGTTCCGAA
ATGCTCAGGTTGGTGGGGCACACAAGGTGCTAACATTGTTAGCACTCAAC
CACCCGCACCGTGACGTAAACGATTCACAGCAAAACCGCGCCCCCTCCCT
CACCGCTGCGATGCACCAAAAAACAAACCTAAAAAGGAGTCCTTCATGGA
TGGGAAGAAGGTTCTGTGCGAGGGCGGCCCATCGTTCTGCGGCTCTCGGA
GAAAAGATCCGTCCAATGAGATGCGGCCAACCAGCAACGGCGTAGAGGTG
ACCCGGCGATTGGCACGCAGCTGGAGCCTGCGCATGAGAGGGCAGGAGAA
GCTCGAAATCTGGTCTGGGAGGCTTCCAGCTTAGGTGGCGCCCCATGTGT
TTCGCCGGACTCGGACTCAATAAGTCAACACCCCCAGTCGATATTCCTAC
CGATTGTATGATACTTGCTATTTTCTTTTTTTAGATGCTGCTGCACGATC
TTCCGATGTGCGGGGTTGCTGCTACGGCAGTCTCCGCACTTTCGTTTTGA
TGTATTGGGGGGCCAACTTTTCTTGTCTTGTCCTTTCTACTAGCACGTGA
GTTGCGATACCGTGCATCGTCGTGCATCTGCATTCTGCTGTTATTGTGCA
CGGTGTCGCAGCGCTTTTTGGTATTGACAGTAGTGGAAATTGGCCGTGTC
TGTTGGATCAGTACGGACAAAGGGGGTACTGGGTGGAGAGATCGGGATGT
TTTTTTTATGTGAAGACAACAACAACAACAAGTAGTAGTCTAGCGCTATA
CGCTATATGGTTTTTGTTTGATTTTATCGCTCTGCTGACCCTTCGAGTGC
TATACGGTATGGTTTTTGTTTGATTTTATCGCTCTGCTGACCCTTCGGGT
CCATAGTCTATCTTTCAGGTGAAGTTAACCTTTGTTTTTGTTTGTTTCTC
ACGTTAGCTCTCTATTCCAAAACATCCATGGGAGCCCGTGGTCACAAAAC
TGGGCACACTCGACGTCCCAAAGAAACTCAGCAAAAATATGGTACATACG
CGCCCTGCGATACTAAACTGGGCCCCGAGGGGTTTCGCGTCTAGCTGGCG
CTTAAACACCCAACTTGTGACCACGGGAATTGACCGTGTCAGTTGGATCA
GTACGGACTAAGGGGGTCGGGGGTCGGTTTTGAATGTGAAGACAACAACA
ACAACAACAACAACAACAGTAGTAGTGGCTGTGGAGGGTGTGCTTCGCAA
GACAGAGTACTGCCATCGAGTACATGATGGTCGCAACTACGCTATGTTTG
CATGTCTGTCATTTTGGGTGTGTAACAGTAGTGTATGAAGCAGCTGCATA
CGTAGGTAGTATAAGCATTGTGGGTTAGCGAGGGTGTACAGGTACATTGT
AGAACAGAGAAAAAAAAATTCGAGGGTGAAGCGGCGAAACGGTGAAACGG
ACGGGCAAACATGCGGTGGAATC
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Coding sequence (CDS) from alignment at C-linearis_contig105:19647..24369+

>mRNA_C-linearis_contig105.925.1 ID=mRNA_C-linearis_contig105.925.1|Name=mRNA_C-linearis_contig105.925.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1932bp|location=Sequence derived from alignment at C-linearis_contig105:19647..24369+ (Chordaria linearis ClinC8C monoicous)
ATGCTGTCGGAGAAAGATGGCGTGCTTTCCTCGGACAAGCCGCCGCACTT
CGCGGAGTATGGGGTGGTGGTCGCAGACTCCACCGACACCACTAACGATG
ACGACAGCACCACCACCACTAGCAAGAAGGACGACACCAGCAGCAGCAAC
AACAACAACCGCGCCAACAACAACGGAGGCGGCGGGGGCGGCGGCCACAA
AATGCCTCACGGCGGCAGCGGGAATCCATCCTCCCCAGCTCCGAGCGCAA
ACCCGGGGGCTTTAGGAGGAGAGAGTCAGTCCCGCTTCTCTAAATCGTGG
TCCAAGGCCAGGATGCCGGGCTGCCCCCTTGACCCTACGGTTCACCCATC
CCCGTCTCTCAAGGTCGGGGACGTGCTGCGCGGGAAGCTGCTCAGCGAGA
ACGGGCAATCGAGCATAAGCGCGAGCCGCGATGACGGGTCTATTCTCTTG
ACCCGGGTGACTGGAGAGCCGCCCCTCGACCTTAAAGGCAAGCAGACTGG
TCCCATCCCCACAACTGTGACGACCTTGATCAGGTCCGACCTCGGCAAGG
TTAACAGGGTTTACCAGCTGCGCGCGGACCTCGACGAGGAGGAGGAGGAG
GTCAAGAAGCTGATGAGGGACGGCCAGCCTCCCAAGAAGGGGGTGAAGAA
GGCCGTTCTGGGCATTTTCCCGTGGGGCGAGGCCGGGTGGCTGTACCGCC
GGGAGATGGCACACACCAAGGCTCACAGAGGGGAAGTGGAAGTGATTATC
ACCAAGCGGGGTGTGGTGATGCTGTCGGAGAAAGATGGCGTGCTTTCCTC
GGACAAGCCGCCGCACTTCGCGGAGTATGGGGTGGTGGTCGCAGACTCCA
CCGACACCACTAACGATGACGACAGCACCACCACCACTAGCAAGAAGGAC
GACACCAGCAGCAGCAACAACAACAACCGCGCCAACAACAACGGAGGCGG
CGGGGGCGGCGGCCACAAAATGCCTCACGGCGGCAGCGGGAATCCATCCT
CCCCAGCTCCGAGCGCAAACCCGGGGGCTTTAGGAGGAGAGAGTCAGTCC
CGCTTCTCTAAATCGTGGTCCAAGGCCAGGATGCCGGGCTGCCCCCTTGA
CCCTACGGTTCACCCATCCCCGTCTCTCAAGGTCGGGGACGTGCTGCGCG
GGAAGCTGCTCAGCGAGAACGGGCAATCGAGCATAAGCGCGAGCCGCGAT
GACGGGTCTATTCTCTTGACCCGGGTGACTGGAGAGCCGCCCCTCGACCT
TAAAGGCAAGCAGACTGGTCCCATCCCCACAACTGTGACGACCTTGATCA
GGTCCGACCTCGGCAAGGTTAACAGGGTTTACCAGCTGCGCGCGGACCTC
GACGAGGAGGAGGAGGAGGTCAAGAAGCTGATGAGGGACGGCCAGCCTCC
CAAGAAGGGGGTGAAGAAGGCCGTTCTGGGCATTTTCCCGTGGGGCGAGG
CCGGGTGGCTGTACCGCCGGGAGATGGCACACACCAAGGCTCACAGAGGG
GAAGTGGAAGTGATTATCACCAAGCGGGGTGTGGTGGAGTCCTTCATGGA
TGGGAAGAAGGTTCTGTGCGAGGGCGGCCCATCGTTCTGCGGCTCTCGGA
GAAAAGATCCGTCCAATGAGATGCGGCCAACCAGCAACGGCGTAGAGGTG
ACCCGGCGATTGGCACGCAGCTGGAGCCTGCGCATGAGAGGGCAGGAGAA
GCTCGAAATCTGGTCTGGGAGGCTTCCAGCTTAGGAGTCCTTCATGGATG
GGAAGAAGGTTCTGTGCGAGGGCGGCCCATCGTTCTGCGGCTCTCGGAGA
AAAGATCCGTCCAATGAGATGCGGCCAACCAGCAACGGCGTAGAGGTGAC
CCGGCGATTGGCACGCAGCTGGAGCCTGCGCATGAGAGGGCAGGAGAAGC
TCGAAATCTGGTCTGGGAGGCTTCCAGCTTAG
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